NA ----> NA

Intron 1 GTAAGCTTTT ... TCTTGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.24	21	8	18
A2	33.33	9	5	4
A3	22.11	37	6	15
A4	23.08	20	6	6
A5	26.32	7	2	3
A6	21.21	13	2	5
A7	21.43	44	8	16
A8	29.11	28	14	9
A9	15.79	16	4	2
A10	23.08	30	4	14

>TRINITY_DN122005_c1_g3_i8 from sample A1 / Example spliced isoform

CTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCGTGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGAT
CTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGGTAAGCAGTATATTCGTGCCCTGTGACAAATCCCTTATTGGAGTTGGTGGAATTATTATATTGGGGTGTATAGAACAAAAAGGGGTTATCCCGAACCGTTGTCTTACAGTTCTGTGACGAAAAGTTTGAAATATCAATAACATCCA
GGGTACATGAACTCAACAACTGAGCTCGGAGCAATCAATCTCAGCAACTGAGCTCAGAGCAATTGCTCATTAAGATAGAGGGTTATTGGTTTTCAGGAGAAATTCATATTCAAGTTCTTTCAGAAAATGTCAAAAACCCTCAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATATAGGAATTGTTCGAGTTAT
GGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGTCTGTGAGCACAATACGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGA
GCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTG
TAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAA
CCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAAT
GATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGGTGGTTGTTGATGAA
GAACAATTCAAGGTTGCAGGAAGAAAGCCATTTGCTCACCTAGCAGATCCTGAAGTGGAG

>TRINITY_DN122005_c1_g3_i11 from sample A1 / Example unspliced isoform:

CTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCGTGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGAT
CTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGGTAAGCAGTATATTCGTGCCCTGTGACAAATCCCTTATTGGAGTTGGTGGAATTATTATATTGGGGTGTATAGAACAAAAAGGGGTTATCCCGAACCGTTGTCTTACAGTTCTGTGACGAAAAGTTTGAAATATCAATAACATCCA
GGGTACATGAACTCAACAACTGAGCTCGGAGCAATCAATCTCAGCAACTGAGCTCAGAGCAATTGCTCATTAAGATAGAGGGTTATTGGTTTTCAGGAGAAATTCATATTCAAGTTCTTTCAGAAAATGTCAAAAACCCTCAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATATAGGAATTGTTCGAGTTAT
GGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGTCTGTGAGCACAATACGGgtaagcttttcatctataatattcgatgcaaggttt
tttagggttttaagtcaatttttctcagttttttaatcataggatttgttctcttcatattttgccattaaatattcattgctcttgttcagGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGAGCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACA
TAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTGTAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGT
ATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAACCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTA
CTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAATGATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCC
ATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGGTGGTTGTTGATGAAGAACAATTCAAGGTTGCAGGAAGAAAGCCATTTGCTCACCTAGCAGATCCTGAAGTGGAG

Intron 2 GTAAGCAGTA ... TAACATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.79	8	17	10
A2	67.74	5	8	13
A3	92.31	1	6	18
A4	68.97	9	18	22
A5	77.27	5	12	22
A6	58.14	9	15	10
A7	81.82	6	25	29
A8	81.25	3	12	14
A9	70.59	5	10	14
A10	62.32	13	17	26

>TRINITY_DN122005_c1_g3_i7 from sample A1 / Example spliced isoform

CTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCGTGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGAT
CTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGGGTACATGAACTCAACAACTGAGCTCGGAGCAATCAATCTCAGCAACTGAGCTCAGAGCAATTGCTCATTAAGATAGAGGGTTATTGGTTTTCAGGAGAAATTCATATTCAAGTTCTTTCAGAAAATGTCAAAAACCCTCAAAGGC
GGCAATACTCTATGTAAGGAATCATGCTATGATATAGGAATTGTTCGAGTTATGGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGT
CTGTGAGCACAATACGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGAGCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATAT
GAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTGTAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTC
TATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAACCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATG
CAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAATGATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTT
ACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGGTGGTTGTTGATGAAGAACAATTCAAGGTTGCAGGAAGAAAGCCATTTGCTCACCTAGCAGATCCTGAAGTGGAG

>TRINITY_DN122005_c1_g3_i12 from sample A1 / Example unspliced isoform:

CTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCGTGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGAT
CTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGgtaagcagtatattcgtgccctgtgacaaatcccttattggagttggtggaattattatattggggtgtatagaacaaaaaggggttatcccgaaccgttgtcttacagttctgtgacgaaaagtttgaaatatcaataacatcca
gGGTACATGAACTCAACAACTGAGCTCGGAGCAATCAATCTCAGCAACTGAGCTCAGAGCAATTGCTCATTAAGATAGAGGGTTATTGGTTTTCAGGAGAAATTCATATTCAAGTTCTTTCAGAAAATGTCAAAAACCCTCAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATATAGGAATTGTTCGAGTTAT
GGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGTCTGTGAGCACAATACGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGA
GCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTG
TAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAA
CCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAAT
GATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGGTCAAAAGTTTAAGC
AATAGTTTGGTATATATTTGTAGTTGTAAGTGTTGATATAGCTGCCAATTCCACCACTGCAAGACATATATTAAGATTGTTGCTATAGCCTTATAAAATTAATATTACTTGCCTTCAATACTTTATCACTGTTGGATATTTTTACAAGTCTGAAATTTATTTTTAATCTGATTGTAAGTGACTGAATGCAATTGTTGAAG
TGAATAGACTAAGAACAATTTTGTTTTGAATGCCAATTGTTTGTCAAAAATCACAAACCAAAACTTAGCATTAAAAATTAGTTCAACCTAGGAACAGACCTTATCAGCTGGAAATGTTACAGGGGTGTTTAGGAACTGCAAATAAAGTGTTTGACTAAATTTCTCATCCAAAGAACTCTTCAGAAGCAGCTGAAATTCAT
CCCCCTCATTCTCTTCTAAACAAATGTTTTCAGGATGAAGTGATTCGTTTCTTTGCAGTCTTGGGACATGTCAAAAGGAATCAACGTTGATTTCATCTCCCTCATTCTCATCTAAACCAATGCCTTCGAGATGAAGTGATTCTACATTTTTTCTTTGCAGTCTTGGTACATGTTAACAAGATTCTGAGCATGATAGAGTC
AAGTTTACTCTGATTGTAGAATACCCCAGTCCTAAT

Intron 3 GTGGTTGTTG ... TGAAGTGGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	32.63	29.5	10	17
A2	45.91	17.5	17	12.5
A3	42.16	18.5	9	14.5
A4	41.13	16.5	8	11.5
A5	33.33	5.5	1	4.5
A6	45.39	22	12	19
A7	44.35	40	24	35
A8	45.59	45	38	30.5
A9	51.91	34	25	34
A10	47.41	28.5	24	21

>TRINITY_DN41679_c0_g3_i6 from sample A6 / Example spliced isoform

CTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCGTGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGAT
CTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGGTAAGCAGTATATTCGTGCCCTGTGACAAATCCCTTATTGGAGTTGGTGGAATTATTATATTGGGGTGTATAGAACAAAAAGGGGTTATCCCGAACCGTTGTCTTACAGTTCTGTGACGAAAAGTTTGAAATATCAATAACATCCA
GGGTACATGAACTCAACAACTGAGCTCGGAGCAATCAATCTCAGCAACTGAGCTCAGAGCAATTGCTCATTAAGATAGAGGGTTATTGGTTTTCAGGAGAAATTCATATTCAAGTTCTTTCAGAAAATGTCAAAAACCCTCAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATATAGGAATTGTTCGAGTTAT
GGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGTCTGTGAGCACAATACGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGA
GCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTG
TAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAA
CCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAAT
GATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGATCTGGAGTTTGGCT
TTGGGGGTTCTTTTAAGAACCATTAAGTTTCCAGTAGCATTTAATGCTACTCTGGTAGATCTTGGTGAGTATGCACTTTATGTTGGATGCACTAATGGCA

>TRINITY_DN41679_c0_g3_i2 from sample A6 / Example unspliced isoform:

CTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCGTGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGAT
CTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGGTAAGCAGTATATTCGTGCCCTGTGACAAATCCCTTATTGGAGTTGGTGGAATTATTATATTGGGGTGTATAGAACAAAAAGGGGTTATCCCGAACCGTTGTCTTACAGTTCTGTGACGAAAAGTTTGAAATATCAATAACATCCA
GGGTACATGAACTCAACAACTGAGCTCGGAGCAATCAATCTCAGCAACTGAGCTCAGAGCAATTGCTCATTAAGATAGAGGGTTATTGGTTTTCAGGAGAAATTCATATTCAAGTTCTTTCAGAAAATGTCAAAAACCCTCAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATATAGGAATTGTTCGAGTTAT
GGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGTCTGTGAGCACAATACGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGA
GCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTG
TAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAA
CCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAAT
GATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGgtggttgttgatgaa
gaacaattcaaggttgcaggaagaaagccatttgctcacctagcagatcctgaagtggagATCTGGAGTTTGGCTTTGGGGGTTCTTTTAAGAACCATTAAGTTTCCAGTAGCATTTAATGCTACTCTGGTAGATCTTGGTGAGTATGCACTTTATGTTGGATGCACTAATGGCA

Intron 4 GTAAGCAGTA ... TTTGTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	68.21	8	17	17.4
A2	56.58	8	8	12.9
A3	62.5	5	6	10.7
A4	56.3	12	18	12.9
A5	66.33	4	12	3.8
A6	69.39	4	15	3.1
A7	65.72	13	25	24.9
A8	68.29	9	12	26.8
A9	58.21	9	10	15.1
A10	48.96	22	17	25.3

>TRINITY_DN47354_c0_g1_i3 from sample A7 / Example spliced isoform

CTTTCGAGCTTTATAGGGTTTCCTAGTCATTTTTTGCACTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCG
TGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGATCTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTAT
AATCAAAACGGTCTGTGAGCACAATACGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGAGCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGGAGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAA
ATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTGTAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGACGTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCA
TAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAACCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGAATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGA
CATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAATGATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGTCTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAG
AAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGGTCAAAAGTTTAAGCAATAGTTTGGTATATATTTGTAGTTGTAAGTGTTGATATAGCTGCCAATTCCACCACTGCAAGACATATATTAAGATTGTTGCTATAGCCTTATAAAATTAATATTACTTGCC

>TRINITY_DN47354_c0_g1_i2 from sample A7 / Example unspliced isoform:

CTTTCGAGCTTTATAGGGTTTCCTAGTCATTTTTTGCACTTGTTCAGCCCAGGAGAGGGTCTGCCCTCCTCGGCTCTGTCGACCATTGTATCTGTGTCTATACACTATAATTCTGAAGGAAATTTATGATATTATACCTGAGAGGTTCCCTCTCGGCGTTAGTTCACTTGGATTACCGCACTTTCCCTACACCTTGCCCG
TGTATTGGAGATTCGAATTCGGTTTTCAGGTCTATGATCTCAGCAAGGAATTTGGACGAGGGTTGTTCCATAGCCAACAAATGATCTTATGGgtaagcagtatattcgtgccctgtgacaaatcccttattggagttggtggaattattatattggggtgtatagaacaaaaaggggttatcccgaaccgttgtcttaca
gttctgtgacgaaaagtttgaaatatcaataacatccagggtacatgaactcaacaactgagctcggagcaatcaatctcagcaactgagctcagagcaattgctcattaagatagagggttattggttttcaggagaaattcatattcaagttctttcagaaaatgtcaaaaaccctcaaaggcggcaatactctatgt
aaggaatcatgctatgatataggaattgttcgagttatggttgaatattttaaactttgtttcagAAAATGTCAAAAACCCAAAAAGGCGGCAATACTCTATGTAAGGAATCATGCTATGATAAAGGCAATGTTAACACATTGTCCATTGCACGAGAAGGAGGTCACATTTATAATCAAAACGGTCTGTGAGCACAATAC
GTAGGAATTGTTCGAGTTATGGTTGAATATTTTAAACTTTGTTTCAGAAAATGTCAAAAACCCAAAAAGGGTACTGATTTGCTACAGTTTCTTGGAGTCTGGTAGAGCTTATTGACTGGTTGAGGAGGGATGCACCAGTTGTGAAGAAGAAAAAACCCAGAAATCAATTTGCTTGACATAATCACTGTTTGTTGCTATGG
AGAAGTCGTTCCACACGCAATGACTAAAAATACAAGCACAAATTTCCATATATGAGTTCGTGGTTGTTGGAAAAGGGTTCACTTATGTTTCTAGTTGTGACTGTTGTAGAAAGTGTAGTGGGGAAAGATAACACTCAGTTGTGGCTGCAAAGAACAACAAGGCCCTAGTAGAGGGGGTATTCACCATTTGTAGAGGGGAC
GTTACAACTTAAAGACAATTGTGGACAGGCGCACTCAGCCATAGAGGTGTCTCTATTTAGCTGATTATTCCAACGTTTTATGAGGGCTACTTGAGGGAGAACCCAACCATTTCCATCTTGTTGGATACATTTCCATCCTTTCCTAAGAGTTGGATTGGTGGAGGCCTTCTTTAATCTACTTGCTGGTCATTAGCGGAAGA
ATCAGCCTCTTTCGCGTCAGCGTCCTAGTCTGTCCATTTGACATGGTGAAATGCAACATTTGGGAAAAAAGAGAGGGATCGCTACATCCATCAAGAAGTGGGGAATGATGACTATCACCTACAGTGACCCATTCATCCAAATCAATGTTTGGGAAAAAAGAGAGGGGTCGCTACAGCCATCAAGAAGTGGGGAATGATGT
CTATCACCTACAGTAACCCATTCAGCTAGATCATGGCCAAGAAGGGGGAGTTTACCATTACAAGAGGACTGCCTACTCATGCGATTTTCAGGTGGTTGTTGATGAAGAACAATTCAAGGTTGCAGGAAGAAAGCCATTTGCTCACCTAGCAGATCCTGAAGTGGAGATCTGGAGTTTGGCTTTGGGGGTTCTTTTAAGAA
CCATTAAGTTTCCAGTAGCATTTAATGCTACTCTGGTAGATCTTGGTGAGTATGCACTTTATGTTGGATGCACTAATGGCAAGAATATACATTGCTGCTTTGAACGTTGGAACAACATCTGAAAGCATACATGGAGATGGTATTACTGGGACACTTGTTGACCACAGATCTAGAGTTTGGCTTTGGGGGTT