sp|Q402E2|H33A_LILLO ----> Histone H3.3a

Intron 1 GTATCACTCT ... TCATTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	72.02	17	35.5	52
A2	73.74	8	13	32
A3	75.59	10	27	35
A4	91.19	2	14.5	27
A5	82.08	3	12.5	15
A6	56.04	29	31	43
A7	55.76	47	43.5	75
A8	65.41	39	59.5	88
A9	70.6	33	70.5	88
A10	68.45	25	55.5	53

>TRINITY_DN47399_c2_g1_i3 from sample A7 / Example spliced isoform

CAACTATCAATTTGTGGTGTGCAGTGTGCATTTGTGTCAGAGACGCCGGAAAAGCAAGAAAGAGAAGGTGTTTTATTCCTCTATCGACTGTCAACGGCTATGTGCCTTCCTTGAATCTGGACGTTGGCGTTTGCGTCTTGGTCCTATACCTCTGTCTGTTTGATCTGAAAGGGAATTACTCACAGCCAGTATTACTCGAT
GGAAAGAACATCGACAGTTATGGACTTCCAAACGCTGGCCACGCCTGTCCCGTCGTCCTCTATTTGTGGAGTTGCGCTTGCGCTTGCCTCTATTTCCATGGCGGTGCCTTCATCATGTGCTCTCCGGCAAATGCTACAGGACCAATTGTCCGTCGATTGTTTCTAGCGGCTCTAAGGATTTCTTTCTTTGCCGGAATTTA
CTTTTTTCGCGTGACTTTTCTGAATAGATTTCTCTATACCTTGTTATTTGATAATCTTTCCAACACATGGCTCGTACGAAGCAGACAGCACGTAAATCTGCTGGAGGAAAAGCTCAAAGGAAGCAAGTCGCTACAAAGGCTGCACGTAAATATGCTCCAACAACATAATGAATGGCTTTGTAGCGATGGTTATTTCATTT
TTCATATTGAATGCCTTTGTATTATGATGGTTATTTCATTTTTCATTTTCTTCGAAGTGCATCTCATGGGGAATTGTTTAATTAAATTGAGAAATTTGAAAGTATCAGAAGAGCACGGAGTTGCTAA

>TRINITY_DN47399_c2_g1_i8 from sample A7 / Example unspliced isoform:

CTTTGTTTGTCCCTTGGTCCACACCTGTTGCTTTGGAGTAATGTTCTTGTTCATGATGTCTGGGCAACAGATTTCTCTATACCTTGTTAGTTGATAATCTTTCCAACACATGGCTCGTACGAAGCAGACAGCACGTAAATCTGCTGGAGGAAAAGCTCAAAGGAAGCAAGTCGCTACAAAGgtatcactctttttataga
ttttctgttgactatttcttcagtgtttggagattgtaaatggcttttcatttacagGCTGCACGTAAATATGCTCCAACAACATAATGAATGGCTTTGTAGCGATGGTTATTTCATTTTTCATATTGAATGCCTTTGTATTATGATGGTTATTTCATTTTTCATTTTCTTCGAAGTGCATCTCATGGGGAATTGTTTAA
TTAAATTGAGAAATTTGAAAGTATCAGAAGAGCACGGAGTTGCTAAATCGAAAGCAGCTCTTTCAAAGGCTTGTTAGGAAAATCGGCCATTTATTCATATTCTCAACATGAATATGAATATTTGTGACCTGAATATGAATATTTGTTCTTTGGCATGATTTGGCATGACTTAAAGGTAGAATGGGTTTGTTGATCATTTC
ACCCACCTATCCATTACCAGTTCTGTTCATTAGAGACATCCATTTGTTCGATATCTAGATCAGATCCCACGCCTGCTCCGTGACGAGTTCCATATCCATGAGTAGATCCACCAGTAGATGACGGAGAAAAAAGAAAACCGTACCATGAAAAACATCATTCAATGTCGAAAACCTTAACGCTCAAAACTTTATAAAGTTAA
AAACCTGAACGACACCAGGGTCCGGGAGATTAAAAAACATTTCAAATCATGAGTATGAGAACAATAGGCTTCTTCCGAAATGCCCATCTGAATTTATCAAAATCATTTAATGGAATGGAATGGGATCCGAGGGTGACCGGGATAGTAACGGCAATCTTGTTCCAAAAAGCCAATGTGAATTTAAAATCCTTTAATGGAAT
GGGATCAGAGGGTGAGCAGGTTACTTAATGTTTTGGATCATCGGTGGCCTCGAATGGCTTAAAGGATGCAGAAGCAGAGCCTCATATTCAAGACTTCGTAAATTTGCTTTTCCCTATGGCTGAGACCGACACCGTGGCCTCGAATGGCC