NA ----> NA
Intron 1 GTTTGCAATG ... CTCTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 30 | 79 | 31 |
| A2 | 51.28 | 57 | 65 | 55 |
| A3 | 60.64 | 37 | 76 | 38 |
| A4 | 58.97 | 24 | 34 | 35 |
| A5 | 61.36 | 17 | 39 | 15 |
| A6 | 54.07 | 248 | 257 | 327 |
| A7 | 55.76 | 218 | 244.5 | 305 |
| A8 | 54.78 | 220 | 196 | 337 |
| A9 | 56.26 | 208 | 248 | 287 |
| A10 | 52.86 | 169 | 181 | 198 |
>TRINITY_DN108992_c0_g1_i3 from sample A2 / Example spliced isoformAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGC
ATAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATCTGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGG
AACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTG
GGATTCTTCTACTTCTTTTCCTGATGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTA
CTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTGTAAAATATGGCTTAGAGCTGCGTGCTTGTTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCC
TGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCC
>TRINITY_DN108992_c0_g1_i2 from sample A2 / Example unspliced isoform:AAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGC
AAAGCTAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCG
GATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGgtttgcaatgggtacaggaagataccattacttttcttacgagtgatggactcatgcgaattggaggctctgttgtgccacagcgtattaatccttcagataagaatcaagggatactgggagcctcacatagataccaacgattccaagaagagaactac
atggatcccaaccaaggcctctgtctgggtgccatctttgacattgcagcaacaaatggattggacttagggcgcagactctgcatatttgggttttgccgctctattgagatgttgagtgatgtggtggaagacacagtgttggaacagggaggagaggagctttggtaagtttagggctttatgctttggccttgtga
tggtgcacctttgtttcttcatgggttggactattggagatggtccaatggacacaattttaatttagtattcagtcagagtaaacaaaacctatgttccttgtaaatttgcttttccttgtcaggttaactttaccagataacttcttttgcacaaagataaatattttgacaatctaaagaatgcacgccgacagatt
tccttacttgctgagtgctctataaaaggaaggaggaaattgaaaaggaaaggaaaaaacatggatgcaattttagattgtacagcatagagagacttgagagagctgtttgattcttactgggatgaacatggtatcacaaataaacgtttttcattcaacttatgtaataaataatgaactctgagcagGTTGTAGCT
TCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTA
TGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTGTAAAATATGGCTTAGAGCTGCGTGCTTGTTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGA
TCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCC
Intron 2 GTAGATGTTG ... ACTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.36 | 7 | 4 | 4 |
| A2 | 50 | 10 | 11 | 9 |
| A3 | 33.33 | 18 | 7 | 11 |
| A4 | 33.33 | 11 | 2 | 9 |
| A5 | 50 | 1 | 0 | 2 |
| A6 | 40.21 | 29 | 19 | 20 |
| A7 | 36.36 | 56 | 19 | 45 |
| A8 | 39.19 | 45 | 19 | 39 |
| A9 | 33.33 | 58 | 29 | 29 |
| A10 | 34.25 | 24 | 10 | 15 |
>TRINITY_DN40188_c0_g2_i4 from sample A6 / Example spliced isoformATGAGATACAGTTACGGATAATAAAAAAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTG
TCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCATAGCTGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACG
ATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGA
GGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGTTAAGCCTGACTTGGTCAAGTACCCTTTTGCCACACACTGCAGTCCTTATTTTGTCTTGACTGTTTGAAAGGAGCTTTGGTAAGTTTAGGGCTT
TATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAAG
AATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAAC
TCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTT
GAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAAT
TTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCT
>TRINITY_DN40188_c0_g2_i9 from sample A6 / Example unspliced isoform:ATGAGATACAGTTACGGATAATAAAAAAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTG
TCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATCTGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTC
AGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTG
CTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGA
GCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGG
CATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGTTAAGCCTGACTTGGTCAAGTACCCTTTTGCCACACACTGCAGTCCTTATTTTGTCTTGACTGTTTGAAAGgta
gatgttgagttatttggttgtcaggaggtaatgaaaaatatttttatgcttcatattcctagatttaatgtagccatgaataatcgatcttgatgcatattgctataatcaaccaattatggttggcagaatgtttttaaaatatcttatgcttgccattcttgcacaacttctgcagGAGCTTTGGTAAGTTTAGGGCT
TTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAA
GAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAA
CTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCT
TGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAA
TTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCT
Intron 3 GTCAAGTACC ... TGTTTGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.48 | 13 | 13 | 7 |
| A2 | 38.78 | 15 | 9 | 10 |
| A3 | 47.37 | 15 | 9 | 18 |
| A4 | 39.29 | 17 | 11 | 11 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | 46.97 | 35 | 33 | 29 |
| A7 | 41.78 | 62 | 33 | 56 |
| A8 | 38.79 | 71 | 45 | 45 |
| A9 | 49.77 | 54 | 49 | 58 |
| A10 | 39.39 | 50 | 41 | 24 |
>TRINITY_DN47385_c3_g1_i1 from sample A7 / Example spliced isoformTGCTAACAGGCGGGGTGGCTGGGGCGGTCGGCTGTGGCCGTCCCCACCCCGGATCGAACCCCACGCCCTCCTTCTAAGGCGTCCCCGCGTTATTGGGCGCCAGCTACATTGTTCCTTAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAA
ATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATC
TGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAA
TGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACT
TTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGG
GCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGC
TGTAACCAATAATCGGTTAAGCCTGACTTGGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTA
ACTTTACCAGATAACTTCTTTTGCACAAAGATAAGTATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAA
CATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTA
GAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCA
TTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCTTATAACTGTCTTGTG
GTTTTCGTCTTTCTGGTTGTGCTATGCATTCTCTGATTTAATAAATTC
>TRINITY_DN47385_c3_g1_i5 from sample A7 / Example unspliced isoform:TGCTAACAGGCGGGGTGGCTGGGGCGGTCGGCTGTGGCCGTCCCCACCCCGGATCGAACCCCACGCCCTCCTTCTAAGGCGTCCCCGCGTTATTGGGCGCCAGCTACATTGTTCCTTAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAA
ATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATC
TGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAA
TGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACT
TTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGG
GCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGC
TGTAACCAATAATCGGTTAAGCCTGACTTGgtcaagtacccttttgccacacactgcagtccttattttgtcttgactgtttgaaagGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATT
CAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAGTATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATT
TTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGC
ATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCT
TTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTG
CATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCTTATAACTGTCTTGTGGTTTTCGTCTTTCTGGTTGTGCTATGCATTCTCTGATTTAATAAATTC
Intron 4 GTAGATGTTG ... TTGTCAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.72 | 7 | 7 | 8 |
| A2 | 41.18 | 10 | 3 | 11 |
| A3 | 34.55 | 18 | 7 | 12 |
| A4 | 45 | 11 | 5 | 13 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | 46.3 | 29 | 22 | 28 |
| A7 | 36.72 | 56 | 13 | 52 |
| A8 | 38.36 | 45 | 13 | 43 |
| A9 | 40.82 | 58 | 33 | 47 |
| A10 | 45.45 | 24 | 14 | 26 |
>TRINITY_DN40188_c0_g2_i4 from sample A6 / Example spliced isoformATGAGATACAGTTACGGATAATAAAAAAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTG
TCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCATAGCTGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACG
ATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGA
GGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGTTAAGCCTGACTTGGTCAAGTACCCTTTTGCCACACACTGCAGTCCTTATTTTGTCTTGACTGTTTGAAAGGAGCTTTGGTAAGTTTAGGGCTT
TATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAAG
AATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAAC
TCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTT
GAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAAT
TTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCT
>TRINITY_DN40188_c0_g2_i2 from sample A6 / Example unspliced isoform:ATGAGATACAGTTACGGATAATAAAAAAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTG
TCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATCTGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTC
AGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTG
CTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGA
GCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGG
CATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGTTAAGCCTGACTTGGTCAAGTACCCTTTTGCCACACACTGCAGTCCTTATTTTGTCTTGACTGTTTGAAAGgta
gatgttgagttatttggttgtcaggagGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACT
TTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACAT
GGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAG
AAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTA
TTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCT
Intron 5 GTAAGCACCA ... CCACGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.32 | 30.2 | 69 | 37 |
| A2 | 57.15 | 51.2 | 66 | 67 |
| A3 | 52.9 | 70.4 | 90 | 66 |
| A4 | 61.66 | 36.6 | 58 | 58 |
| A5 | 68.62 | 24.4 | 46 | 59 |
| A6 | 61.44 | 144.4 | 249 | 204 |
| A7 | 61.96 | 193.2 | 357 | 262 |
| A8 | 58.91 | 132.4 | 192 | 180 |
| A9 | 61.09 | 189.4 | 290 | 286 |
| A10 | 60.31 | 192.6 | 283 | 286 |
>TRINITY_DN98347_c0_g1_i7 from sample A4 / Example spliced isoformAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAA
CATCATTCAAGCAAAGCTAAACAGGAACGCAAAC
>TRINITY_DN98347_c0_g1_i5 from sample A4 / Example unspliced isoform:AAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAA
CATCATTCAAGCAAAGCTgtaagcaccagagactgctttccaattcagttgtagaaatgggcgacacatctgccttaagcttactttcgttttcttcttcagtcactcattgccgaatcccatctattgtcgccgccgatgtaaatgtaaattcgaattcagaaaaatgtgcgccaaagctgattcctcgttgttccacg
cccagAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGG
ATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACA
TGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAG
AAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCC
AACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGA
GCATAATGCCAATCTCTGTTATCAC
Intron 6 GTAATGAAAA ... ACTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 8 | 2 | 4 |
| A2 | 47.62 | 11 | 11 | 9 |
| A3 | 40 | 12 | 5 | 11 |
| A4 | 29.73 | 13 | 2 | 9 |
| A5 | 50 | 1 | 0 | 2 |
| A6 | 35.63 | 28 | 11 | 20 |
| A7 | 36.59 | 52 | 15 | 45 |
| A8 | 39.86 | 43 | 18 | 39 |
| A9 | 29.85 | 47 | 11 | 29 |
| A10 | 28.77 | 26 | 6 | 15 |
>TRINITY_DN40188_c0_g2_i14 from sample A6 / Example spliced isoformATGAGATACAGTTACGGATAATAAAAAAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTG
TCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGG
CGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCA
AGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAAC
AGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGTTAAGCCTGACTTGGTCAAGTACCCTTTTGCCACACACTGCAGTCCTTATTTTGTCTTGAC
TGTTTGAAAGGTAGATGTTGAGTTATTTGGTTGTCAGGAGGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCT
TGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTA
CTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGG
TGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGC
TTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCT
>TRINITY_DN40188_c0_g2_i9 from sample A6 / Example unspliced isoform:ATGAGATACAGTTACGGATAATAAAAAAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTG
TCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATCTGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTC
AGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTG
CTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGA
GCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGG
CATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGTTAAGCCTGACTTGGTCAAGTACCCTTTTGCCACACACTGCAGTCCTTATTTTGTCTTGACTGTTTGAAAGGTA
GATGTTGAGTTATTTGGTTGTCAGGAGgtaatgaaaaatatttttatgcttcatattcctagatttaatgtagccatgaataatcgatcttgatgcatattgctataatcaaccaattatggttggcagaatgtttttaaaatatcttatgcttgccattcttgcacaacttctgcagGAGCTTTGGTAAGTTTAGGGCT
TTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAA
GAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAA
CTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCT
TGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAA
TTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCT
Intron 7 GTAAGCACCA ... TCTTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.29 | 23 | 69 | 51 |
| A2 | 56.38 | 41 | 66 | 40 |
| A3 | 47.74 | 75 | 90 | 47 |
| A4 | 55.91 | 41 | 58 | 46 |
| A5 | 59.72 | 29 | 46 | 40 |
| A6 | 58.13 | 152 | 249 | 173 |
| A7 | 62.12 | 186 | 357 | 253 |
| A8 | 53.55 | 144 | 192 | 140 |
| A9 | 61.47 | 163 | 290 | 230 |
| A10 | 60.19 | 165 | 283 | 216 |
>TRINITY_DN98347_c0_g1_i1 from sample A4 / Example spliced isoformAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAA
CATCATTCAAGCAAAGCTTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTT
CAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGA
TGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCA
TATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGT
GGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGT
GCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCAC
>TRINITY_DN98347_c0_g1_i5 from sample A4 / Example unspliced isoform:AAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAA
CATCATTCAAGCAAAGCTgtaagcaccagagactgctttccaattcagttgtagaaatgggcgacacatctgccttaagcttactttcgttttcttcttcagTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACG
CCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGG
ATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACA
TGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAG
AAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCC
AACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGA
GCATAATGCCAATCTCTGTTATCAC
Intron 8 GTCAAGTACC ... ACTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.91 | 13 | 14 | 4 |
| A2 | 43.4 | 15 | 14 | 9 |
| A3 | 41.18 | 15 | 10 | 11 |
| A4 | 37.04 | 17 | 11 | 9 |
| A5 | 50 | 1 | 0 | 2 |
| A6 | 45.74 | 35 | 39 | 20 |
| A7 | 41.23 | 62 | 42 | 45 |
| A8 | 37.72 | 71 | 47 | 39 |
| A9 | 44.33 | 54 | 57 | 29 |
| A10 | 37.11 | 50 | 44 | 15 |
>TRINITY_DN47385_c3_g1_i1 from sample A7 / Example spliced isoformTGCTAACAGGCGGGGTGGCTGGGGCGGTCGGCTGTGGCCGTCCCCACCCCGGATCGAACCCCACGCCCTCCTTCTAAGGCGTCCCCGCGTTATTGGGCGCCAGCTACATTGTTCCTTAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAA
ATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATC
TGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAA
TGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACT
TTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGG
GCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGC
TGTAACCAATAATCGGTTAAGCCTGACTTGGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTA
ACTTTACCAGATAACTTCTTTTGCACAAAGATAAGTATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAA
CATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTA
GAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCA
TTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCTTATAACTGTCTTGTG
GTTTTCGTCTTTCTGGTTGTGCTATGCATTCTCTGATTTAATAAATTC
>TRINITY_DN47385_c3_g1_i2 from sample A7 / Example unspliced isoform:TGCTAACAGGCGGGGTGGCTGGGGCGGTCGGCTGTGGCCGTCCCCACCCCGGATCGAACCCCACGCCCTCCTTCTAAGGCGTCCCCGCGTTATTGGGCGCCAGCTACATTGTTCCTTAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAA
ATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATC
TGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAA
TGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACT
TTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGG
GCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGC
TGTAACCAATAATCGGTTAAGCCTGACTTGgtcaagtacccttttgccacacactgcagtccttattttgtcttgactgtttgaaaggtagatgttgcgttatttggttgtcaggaggtaatgaaaaatatttttatgcttcatattcctagatttaatgtagccatgaataatcgatcttgatgcatattgctataatc
aaccaattatggttggcagaatgtttttaaaatatcttatgcttgccattcttgcacaacttctgcagGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAAC
CTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAGTATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGA
GAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATA
GGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGA
CTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTT
CTTATTGACACTGAGCACTGTCTTATAACTGTCTTGTGGTTTTCGTCTTTCTGGTTGTGCTATGCATTCTCTGATTTAATAAATTC
Intron 9 GTCAAGTACC ... TTGTCAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.68 | 13 | 13 | 8 |
| A2 | 41.18 | 15 | 10 | 11 |
| A3 | 42.31 | 15 | 10 | 12 |
| A4 | 44.26 | 17 | 14 | 13 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | 49.28 | 35 | 40 | 28 |
| A7 | 40.95 | 62 | 34 | 52 |
| A8 | 39.06 | 71 | 48 | 43 |
| A9 | 48.57 | 54 | 55 | 47 |
| A10 | 42.2 | 50 | 47 | 26 |
>TRINITY_DN47385_c3_g1_i1 from sample A7 / Example spliced isoformTGCTAACAGGCGGGGTGGCTGGGGCGGTCGGCTGTGGCCGTCCCCACCCCGGATCGAACCCCACGCCCTCCTTCTAAGGCGTCCCCGCGTTATTGGGCGCCAGCTACATTGTTCCTTAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAA
ATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATC
TGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAA
TGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACT
TTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGG
GCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGC
TGTAACCAATAATCGGTTAAGCCTGACTTGGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTA
ACTTTACCAGATAACTTCTTTTGCACAAAGATAAGTATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAA
CATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTA
GAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCA
TTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCTTATAACTGTCTTGTG
GTTTTCGTCTTTCTGGTTGTGCTATGCATTCTCTGATTTAATAAATTC
>TRINITY_DN47385_c3_g1_i8 from sample A7 / Example unspliced isoform:TGCTAACAGGCGGGGTGGCTGGGGCGGTCGGCTGTGGCCGTCCCCACCCCGGATCGAACCCCACGCCCTCCTTCTAAGGCGTCCCCGCGTTATTGGGCGCCAGCTACATTGTTCCTTAAAAAAAAAAAAAAAAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAA
ATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATC
TGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAA
TGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACT
TTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACATGGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGG
GCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGC
TGTAACCAATAATCGGTTAAGCCTGACTTGgtcaagtacccttttgccacacactgcagtccttattttgtcttgactgtttgaaaggtagatgttgcgttatttggttgtcaggagGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATG
GTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAGTATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTG
AAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACA
ATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACG
GGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTATTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGC
CAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATTGACACTGAGCACTGTCTTATAACTGTCTTGTGGTTTTCGTCTTTCTGGTTGTGCTATGCATTCTCTGATTTAATAAATTC
Intron 10 GTTAAGCCTG ... TTGTCAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.11 | 11 | 15 | 8 |
| A2 | 46.94 | 13 | 12 | 11 |
| A3 | 55 | 9 | 10 | 12 |
| A4 | 49.09 | 14 | 14 | 13 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | 52.52 | 33 | 45 | 28 |
| A7 | 41.51 | 62 | 36 | 52 |
| A8 | 42.99 | 63 | 52 | 43 |
| A9 | 48.86 | 56 | 60 | 47 |
| A10 | 41.86 | 50 | 46 | 26 |
>TRINITY_DN42038_c0_g1_i11 from sample A10 / Example spliced isoformTGGTGAATTTCCCATCTCCATTGAGTGTGATGAAGAAACTCTTAACTTTGATTTAGGAAGATCAATAAAGGAGAACTGAAAATGCTATATGGGGGTTAAGGATCTTATTATTAAGCATACTGACGATAAGTGCAGGTTAAGATGTTCATTTGCAGGTAAAGAGGTGATTGTACATGCCAGGTGGCAGAGCTGTTATAGTT
GGGAAGTTTTATTAGCCATGGATTCTTTTGTGCAGAGGAATATGCTCTACATGATTAACATAGAAGGAAATTTCATAGATGAAATTTAAATCCCTTAAATTATTTGAGGTGCCCTTTCTACATTGTGCATATTATTCCACCTTTTTTGTATAAACAATGCTGTTTATTTTATTGGTGCAAAGTTCAAACATAGTTTCTTT
GGGTATATTTTAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACTTAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGGAGCTTTGGTAAGTTTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTT
CATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGACAATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCT
CTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAAATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAG
GAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTT
ATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTGTTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTAT
ATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATCGAC
>TRINITY_DN42038_c0_g1_i4 from sample A10 / Example unspliced isoform:AAAAAATTTCCAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAAC
ATCATTCAAGCAAAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATCTGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGC
CCAGAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGA
TTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGGTTTGCAATGGGTACAGGAAGATACCATTACTTTTCTTACGAGTGATGGACTCATGCGAATTGGAGGCTCTGTTGTGCCACAGCGTATTAATCCTTCAGATAAGAATCAAGGGATACTGGGAGCCTCACATAGATACCAACGATTCCAAGAAGAGAACTACAT
GGATCCCAACCAAGGCCTCTGTCTGGGTGCCATCTTTGACATTGCAGCAACAAATGGATTGGACTTAGGGCGCAGACTCTGCATATTTGGGTTTTGCCGCTCTATTGAGATGTTGAGTGATGTGGTGGAAGACACAGTGTTGGAACAGGGAGGAGAGGGCATTTGTCTCATGGGAGAGAGGGATCTGAGCATGACTTACT
TAGGCTGTAGTGGAAGATCGTTGAACTAAGTGACAAGGAGAGTATGTGAACGTTTGTGCAACATTCTGCTGTAACCAATAATCGgttaagcctgacttggtcaagtacccttttgccacacactgcagtccttattttgtcttgactgtttgaaaggtagatgttgagttatttggttgtcaggagGAGCTTTGGTAAGT
TTAGGGCTTTATGCTTTGGCCTTGTGATGGTGCACCTTTGTTTCTTCATGGGTTGGACTATTGGAGATGGTCCAATGGACACAATTTTAATTTAGTATTCAGTCAGAGTAAACAAAACCTATGTTCCTTGTAAATTTGCTTTTCCTTGTCAGGTTAACTTTACCAGATAACTTCTTTTGCACAAAGATAAATATTTTGAC
AATCTAAAGAATGCACGCCGACAGATTTCCTTACTTGCTGAGTGCTCTATAAAAGGAAGGAGGAAATTGAAAAGGAAAGGAAAAAACATGGATGCAATTTTAGATTGTACAGCATAGAGAGACTTGAGAGAGCTGTTTGATTCTTACTGGGATGAACATGGTATCACAAATAAACGTTTTTCATTCAACTTATGTAATAA
ATAATGAACTCTGAGCAGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTT
GCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTATAAAATATGGCTTAGAGCTGCGTGCTTGTTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAA
ATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCATTTACACAATTGCATGGATTGTTTCTGCCTTCTTATCGAC
Intron 11 GTTTGCAATG ... GGGAGGAGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.29 | 30 | 79 | 39 |
| A2 | 54.58 | 57 | 65 | 72 |
| A3 | 62.81 | 37 | 76 | 49 |
| A4 | 65.47 | 24 | 34 | 57 |
| A5 | 67.31 | 17 | 39 | 31 |
| A6 | 58.94 | 248 | 257 | 455 |
| A7 | 59.08 | 218 | 244.5 | 385 |
| A8 | 58.99 | 220 | 196 | 437 |
| A9 | 59.96 | 208 | 248 | 375 |
| A10 | 58.37 | 169 | 181 | 293 |
>TRINITY_DN108992_c0_g1_i3 from sample A2 / Example spliced isoformAAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGC
ATAGCTGTAAGCACCAGAGACTGCTTTCCAATTCAGTTGTAGAAATGGGCGACACATCTGCCTTAAGCTTACTTTCGTTTTCTTCTTCAGTCACTCATTGCCGAATCCCATCTATTGTCGCCGCCGATGTAAATGTAAATTCGAATTCAGAAAAATGTGCGCCAAAGCTGATTCCTCGTTGTTCCACGCCCAGAAACAGG
AACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCGGATTGTATCCCTG
GGATTCTTCTACTTCTTTTCCTGATGGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGAGAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTA
CTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGCCAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTGTAAAATATGGCTTAGAGCTGCGTGCTTGTTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCC
TGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATGAGCATAATGCCAATCTCTGTTATCACCC
>TRINITY_DN108992_c0_g1_i1 from sample A2 / Example unspliced isoform:AAGGGAATTTGCATGAACAGCCATTTTCTTTGCCGGGCACGGGGAATGAATCTTAGAAATTAAATGTGCTTGGGAAAGGTGCGGGCCCGGATGTACTGGCAGAACTTTGGACTTGAATCAAGAGGGCTATGGAAAGCCACAGAATTTGTCCACAGAATCTTTGTATCTGTAGCATTTACCAACGCCAACATCATTCAAGC
AAAGCTAAACAGGAACGCAAACGGCAATTATCGTGTATATTCAAACCCTCGGGCCTTTCCGTGCCTCGTAATGCGATTGCCATTTCAAGGCAGCATTTCAATAATATCTACGCCTCTAAACCGAGGAGGGACGCGCAGAGGCAGGAGGCGAGAGGTCTGTGCTTGTAGTGGCAGGAGAGGCGAAGAGTACGACGATTTCG
GATTGTATCCCTGGGATTCTTCTACTTCTTTTCCTGATGgtttgcaatgggtacaggaagataccattacttttcttacgagtgatggactcatgcgaattggaggctctgttgtgccacagcgtattaatccttcagataagaatcaagggatactgggagcctcacatagataccaacgattccaagaagagaactac
atggatcccaaccaaggcctctgtctgggtgccatctttgacattgcagcaacaaatggattggacttagggcgcagactctgcatatttgggttttgccgctctattgagatgttgagtgatgtggtggaagacacagtgttggaacagggaggagagGTTGTAGCTTCTGAAAAGGAGAGCAAAGGAGGTTTGCATGA
GAAGCTAACAATGACAGTTGCTGTACCACTTCTCTGGGGCATTCCACCTGCTGCAGATAGGCTTCACTTTGCTGTTCGAACTGGTGGTGGAATTGTAGAGAAAGTATATTGGCAGTGGGACTTCTTATGATTACTTTGTTTGCCAGTCTTGAACTGTATATAATTGTATGTTACATTCTCTCGTCTTATTCATCTGCAGC
CAACAATACGGGCCTGCACAACCGTATGCCTTTCTTTTCTTTAAGATTATGTATAGAGACTGTAAAATATGGCTTAGAGCTGCGTGCTTGTTTTTCATTATTGGATAATGTGTATGACTCATGGGCAAGCCCCTGGCAGAAATGTTCAATTTTGTTTCTCCTTGGAGATCATCTGCAAGCTGCTTATATGAATACTAATG
AGCATAATGCCAATCTCTGTTATCACCC