sp|Q9M7Q4|AI5L5_ARATH ----> ABSCISIC ACID-INSENSITIVE 5-like protein 5
Intron 1 GTGGGTGTGT ... GGCTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.66 | 37 | 22 | 51 |
| A2 | 53.06 | 23 | 18 | 34 |
| A3 | 49.06 | 32 | 19.6 | 42 |
| A4 | 63.16 | 14 | 9 | 39 |
| A5 | 48.48 | 17 | 12 | 20 |
| A6 | 63.64 | 6 | 7 | 14 |
| A7 | 40.3 | 20 | 13 | 14 |
| A8 | 60 | 7 | 1 | 20 |
| A9 | 53.85 | 12 | 11 | 17 |
| A10 | 40.3 | 20 | 4 | 23 |
>TRINITY_DN121701_c0_g1_i9 from sample A1 / Example spliced isoformGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGGTATCTCTCACACACTTGGCGGACCGTGAAAAAAAATGCATATATTTTTCCGGGG
ATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGG
AACTTTATCAGGTACATTGAAATGCTTGAAGTATTTTTGCAGTAGAGAAATGGGTGTTTTAGTTTGTTGGTAGGAGTTGTTATTGAAATTGCTGAGACAGTGGATGTAATTGAGTTTGCAATCAATATTTGGCATCACAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGT
AATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCC
AGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCG
ACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGG
TCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGC
AACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGC
GGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCG
CCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAA
CAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAG
TTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTA
GTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGT
CTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAAT
GCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
>TRINITY_DN121701_c0_g1_i7 from sample A1 / Example unspliced isoform:GGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGGTATCTCTCACACACTTGGCGGACCGTGAAAAAAAATGCATgtgggtgtgtgtct
ttgtagttgagggtgatgatgattgtattgtattgtttctcgtgatgcagaaaaactcactctgctgtcatggctgcccgtggattcaataattttttgtttttttatttttgtgttgccgtaatgttttaatatgataggtcgtcgtcgtggctgttcagATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGT
GGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTA
TATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATG
AATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAG
CAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATA
GACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTT
AACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGG
AAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAA
GGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAA
AAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATG
CAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTA
ATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATA
TTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACT
GTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
Intron 2 GTAGTAGCTA ... GGTAAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.64 | 69.8 | 17 | 19.5 |
| A2 | 21.04 | 57 | 16.3 | 12.5 |
| A3 | 13.48 | 73 | 12 | 18 |
| A4 | 33.45 | 28 | 15.3 | 13.5 |
| A5 | 29.26 | 25 | 12 | 1.8 |
| A6 | 16.54 | 99 | 21 | 12.5 |
| A7 | 20.45 | 119 | 33.3 | 20.5 |
| A8 | 16.2 | 98 | 20.3 | 22.6 |
| A9 | 24.12 | 138 | 48.5 | 20.4 |
| A10 | 20.86 | 122 | 35.3 | 27.8 |
>TRINITY_DN107903_c0_g2_i7 from sample A3 / Example spliced isoformAGTAATCAAGAAAGGTGAAAATTGATTAATAGATTAAAAAAAACGAAAAAACCTTAGGGAAGGGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTC
GTGGCGAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAG
CATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATG
AGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTG
AGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCT
AGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGG
TGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATG
GGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCC
TACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTAAAAGAAGAGA
ACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTA
AGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAA
TGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGCCAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGT
GCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCT
GGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTGG
TTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAGACTCAAGACTGTAGGTGTATTTGAC
>TRINITY_DN107903_c0_g2_i2 from sample A3 / Example unspliced isoform:CATGAAATTGAAAAAGCAACAGgtagtagctatttgtgtatacaatgtatttgctatttagtatttacatgttgatatgcaatacagtaaaatatagtagcaagattcgaatacgaataggaagtcgaatacaatggaaaatacccagtacggttccagtatggaaatatacatctcatggatctaaaaacgtattttct
tgcaaattttagaactatttcaatctcaggtagactcaataaatcagtagaaacaattcattcagtagactcaatatactgattaatgcaatataagttacctctattaatataaatgggcaaatagattgccatttctgctaactcaatgcaatagaggggagcgttcactgtgaacgaattccattccagggaaaatt
gtaagggtccatacttttcttttgagtgtagaaacttaatacttctcaaatttctaagaatttgatctaatttgtgggatttttcatgtaaactagttttattatatagaaatttcgggggatattcgttttaattaatcttttgtttcaaataatttaactcctaaacttttccctggtcaagtttaaactgacatata
tgtgtttattttgtggtaaaatagGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTT
AAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAA
ATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGCCAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTG
TGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATC
TGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTG
GTTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAGACTCAAGACTGTAGGTGTATTTGAC
Intron 3 GTACATTGAA ... GGCATCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.25 | 26 | 49.6 | 23 |
| A2 | 49.35 | 39 | 60 | 16 |
| A3 | 48.68 | 39 | 43 | 31 |
| A4 | 55.38 | 29 | 51 | 21 |
| A5 | 63.64 | 10 | 18 | 17 |
| A6 | 44.19 | 12 | 13 | 6 |
| A7 | 46.55 | 31 | 28 | 26 |
| A8 | 42.31 | 15 | 18 | 4 |
| A9 | 44.58 | 23 | 25 | 12 |
| A10 | 44.44 | 25 | 27 | 13 |
>TRINITY_DN121701_c0_g1_i7 from sample A1 / Example spliced isoformGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGGTATCTCTCACACACTTGGCGGACCGTGAAAAAAAATGCATGTGGGTGTGTGTCT
TTGTAGTTGAGGGTGATGATGATTGTATTGTATTGTTTCTCGTGATGCAGAAAAACTCACTCTGCTGTCATGGCTGCCCGTGGATTCAATAATTTTTTGTTTTTTTATTTTTGTGTTGCCGTAATGTTTTAATATGATAGGTCGTCGTCGTGGCTGTTCAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGT
GGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTA
TATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATG
AATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAG
CAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATA
GACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTT
AACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGG
AAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAA
GGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAA
AAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATG
CAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTA
ATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATA
TTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACT
GTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
>TRINITY_DN121701_c0_g1_i4 from sample A1 / Example unspliced isoform:GGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTG
GAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGgtacattgaaatgcttgaagtatttttgca
gtagagaaatgggtgttttagtttgttggtaggagttgttattgaaattgctgagacagtggatgtaattgagtttgcaatcaatatttggcatcacagAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAG
GCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAAT
GGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGC
AGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAG
GGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCT
GCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGAT
CGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGAT
CTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGG
TGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTT
GGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTA
CTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTT
TGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAA
CAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
Intron 4 GTATCTCTCA ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.09 | 29 | 42 | 53 |
| A2 | 63.01 | 27 | 33 | 59 |
| A3 | 68.65 | 29 | 36 | 91 |
| A4 | 65.22 | 16 | 18 | 42 |
| A5 | 58.33 | 15 | 22 | 20 |
| A6 | 68 | 4 | 5 | 12 |
| A7 | 56.63 | 18 | 17 | 30 |
| A8 | 77.78 | 3 | 5 | 16 |
| A9 | 61.9 | 12 | 11 | 28 |
| A10 | 62.16 | 21 | 25 | 44 |
>TRINITY_DN41927_c0_g1_i2 from sample A8 / Example spliced isoformGGTGTTCATCGTCGCCAAGAAACGAAATAAGAGTAATCAAGAAAGGTGAAAATTGATCAATAGATTAAAAAAAACGAAAAAACCTTAGGGAAGGGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGA
GAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTATATTGAAG
ATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGA
TGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATG
TGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGT
ATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCA
CTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGG
GCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGA
GGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTAAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGAT
TCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGAC
AGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTT
GGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGCCAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATAT
TTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTT
AAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTGGTTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAG
ACTCAAGACTGTAGGTGTATTTGACATGCAAGCAATTATGACTAACGCATTGACACAACCAGGTCTCTCCGAAAATGAGCTGGATAATATGACTTAATACTGATGTATATGGGCAGCTTTAATTGAGTTCTCATCGACATTTTTGAGCTATATTTTCTGGATCTTGCATTTTTAATTAGTG
>TRINITY_DN41927_c0_g1_i3 from sample A8 / Example unspliced isoform:GGTGTTCATCGTCGCCAAGAAACGAAATAAGAGTAATCAAGAAAGGTGAAAATTGATCAATAGATTAAAAAAAACGAAAAAACCTTAGGGAAGGGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGA
GAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGgtatctctcacacacttggcggaccgtgaaaaaaaatgcatatatttttccggggattaatgctcgctcatgttggtggtggtgaattctaagctggagctgaccacggaattacggatatttgcagATATATGTCTGTGATTTCGTAGATGGGATGCTGG
AGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTC
TTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGG
GGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGT
GAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTG
GACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCAT
CAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCT
CGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTG
CTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTAAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGG
CCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATG
AATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGG
CCAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTT
TCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTT
GACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTGGTTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAGACTCAAGACTGTAGGTGTATTTGACATGCAAGCAATTATGACTAACGCATTGACACAACCAGGTCTCTCCGAA
AATGAGCTGGATAATATGACTTAATACTGATGTATATGGGCAGCTTTAATTGAGTTCTCATCGACATTTTTGAGCTATATTTTCTGGATCTTGCATTTTTAATTAGTG
Intron 5 GTATTTTTAA ... TTGATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.66 | 68 | 5 | 26 |
| A2 | 13.11 | 53 | 5 | 8 |
| A3 | 12.5 | 70 | 7 | 10 |
| A4 | 41.51 | 31 | 10 | 22 |
| A5 | 30 | 14 | 3 | 6 |
| A6 | 17.14 | 87 | 2 | 18 |
| A7 | 14.15 | 91 | 1 | 15 |
| A8 | 19.49 | 95 | 7 | 23 |
| A9 | 15.45 | 93 | 1 | 17 |
| A10 | 19.67 | 98 | 4 | 24 |
>TRINITY_DN98733_c0_g1_i8 from sample A4 / Example spliced isoformGAGTAATCAAGAAAGGTGAAAATTGATCAATAGATTAAAAAAAACGAAAAAACCTTAGGGAAGGGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAGATTGGAATTTATAAGAGAAGG
GAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGG
GATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGGTACATTGAAATGCTTGAAGTATTTTTGCAGTAGAGAAATGGGTGTTTTAGTTTGTTGGTAGGAGTTGTTATTGAAATTGCTGAGAC
AGTGGATGTAATTGAGTTTGCAATCAATATTTGGCATCACAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGA
CATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCC
AGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCG
GAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTA
TGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCG
GCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTT
AGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTAA
AAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATC
TTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGC
AATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCA
CATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTAT
ACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTT
GCATTTTGGTTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAGACTCAAGACTGTAGGTGTATTTGACATGCAAGCAATTATGACTAACGCATTGACACAACCAGGTCTCTCCGAAAATGAGCTGGATAATATGACTTAATACTGATGTATATGGGCAGCTTTAATTGAGTTCTCATCG
ACATTTTTGAGCTATATTTTCTG
>TRINITY_DN98733_c0_g1_i9 from sample A4 / Example unspliced isoform:TAAAAACGTATTTTCTTGCAAATTTTAGAACTATTTCAATCTCAGGTAGACTCAATAAATCAGTAGAAACAATTCATTCAGTAGACTCAATATACTGATTAATGCAATATAAGTTACCTCTATTAATATAAATGGGCAAATAGATTGCCATTTCTGCTAACTCAATGCAATAGAGGGGAGCGTTCACTGTGAACGAATTC
CATTCCAGGGAAAATTGTAAGGGTCCATACTTTTCTTTTGAGTGTAGAAACTTAATACTTCTCAAATTTCTAAGAATTTGATCTAATTTGTGGGATTTTTCATGTAAACTAGTTTTATTATATAGAAATTTCGGGGAATATTCGTTTTAATTAATCTTTTGTTTCAAATAATTTAACTCCTAAACTTTTCCCTGGTCAAG
TTTAAACTGACATATATGTGTTTATTTTGTGGTAAAATAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGgtatttttaacagacttaatctgtagtacatagttcccactataattcatgtacccagttctttatgtgaaattgtatggacatattattttattttatcaatatatactctgtaatttacaatgctttc
aagtatgaaataatttgtcataactgatttctacaaaagagagtcaaattaatttgatgggtaggctgatatgtagtaaggtcaattatatcttaaagctaaaatctatatctccaattatctttgatttcagATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACAC
TAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTG
CAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGT
ATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAAT
TTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTT
ATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTGGTTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAGACTCAAGACTGTAGGTGTATTTGACATGCAAGCAATTATGACTAACGCATTGACACAACCAGGTC
TCTCCGAAAATGAGCTGGATAATATGACTTAATACTGATGTATATGGGCAGCTTTAATTGAGTTCTCATCGACATTTTTGAGCTATATTTTCTG
Intron 6 GTGGGTGTGT ... AATATGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.67 | 37 | 22 | 54 |
| A2 | 48.39 | 24 | 18 | 27 |
| A3 | 45.45 | 36 | 20 | 40 |
| A4 | 62.03 | 15 | 9 | 40 |
| A5 | 50.77 | 16 | 12 | 21 |
| A6 | 71.43 | 4 | 7 | 13 |
| A7 | 41.38 | 17 | 13 | 11 |
| A8 | 42.22 | 13 | 1 | 18 |
| A9 | 55.56 | 10 | 11 | 14 |
| A10 | 42.03 | 20 | 4 | 25 |
>TRINITY_DN121701_c0_g1_i8 from sample A1 / Example spliced isoformGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGGTATCTCTCACACACTTGGCGGACCGTGAAAAAAAATGCATGTCGTCGTCGTGGC
TGTTCAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGC
ATCAGGGTACTTCAGATCTGGAACTTTATCAG
>TRINITY_DN121701_c0_g1_i7 from sample A1 / Example unspliced isoform:GGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGGTATCTCTCACACACTTGGCGGACCGTGAAAAAAAATGCATgtgggtgtgtgtct
ttgtagttgagggtgatgatgattgtattgtattgtttctcgtgatgcagaaaaactcactctgctgtcatggctgcccgtggattcaataattttttgtttttttatttttgtgttgccgtaatgttttaatatgatagGTCGTCGTCGTGGCTGTTCAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGT
GGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTA
TATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATG
AATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAG
CAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATA
GACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTT
AACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGG
AAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAA
GGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAA
AAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATG
CAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTA
ATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATA
TTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACT
GTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
Intron 7 GTATCTCTCA ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 29 | 31 | 56 |
| A2 | 62.5 | 27 | 28 | 62 |
| A3 | 68.13 | 29 | 26 | 98 |
| A4 | 63.22 | 16 | 12 | 43 |
| A5 | 55.22 | 15 | 17 | 20 |
| A6 | 65.22 | 4 | 2 | 13 |
| A7 | 55 | 18 | 13 | 31 |
| A8 | 77.78 | 3 | 0 | 21 |
| A9 | 63.64 | 12 | 11 | 31 |
| A10 | 60.75 | 21 | 16 | 49 |
>TRINITY_DN41927_c0_g1_i2 from sample A8 / Example spliced isoformGGTGTTCATCGTCGCCAAGAAACGAAATAAGAGTAATCAAGAAAGGTGAAAATTGATCAATAGATTAAAAAAAACGAAAAAACCTTAGGGAAGGGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGA
GAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTATATTGAAG
ATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGA
TGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATG
TGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGT
ATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCA
CTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGG
GCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGA
GGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTAAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGAT
TCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGAC
AGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTT
GGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGCCAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATAT
TTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTT
AAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTGGTTGATTACGTAATAGAGATTTCAATAGATTTATCTGATGTCCAGAGTTTCTTTAG
ACTCAAGACTGTAGGTGTATTTGACATGCAAGCAATTATGACTAACGCATTGACACAACCAGGTCTCTCCGAAAATGAGCTGGATAATATGACTTAATACTGATGTATATGGGCAGCTTTAATTGAGTTCTCATCGACATTTTTGAGCTATATTTTCTGGATCTTGCATTTTTAATTAGTG
>TRINITY_DN41927_c0_g1_i7 from sample A8 / Example unspliced isoform:GGTGTTCATCGTCGCCAAGAAACGAAATAAGAGTAATCAAGAAAGGTGAAAATTGATCAATAGATTAAAAAAAACGAAAAAACCTTAGGGAAGGGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGA
GAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGgtatctctcacacacttggcggaccgtgaaaaaaaatgcatgtgggtgtgtgtctttgtagttgagggtgatgatgattgtattgtattgtttctcgtgatgcagaaaaactcactctgctgtcatggctgcccgtggattcaataattttttgttttttt
atttttgtgttgccgtaatgttttaatatgataggtcgtcgtcgtggctgttcagatatttttccggggattaatgctcgctcatgttggtggtggtgaattctaagctggagctgaccacggaattacggatatttgcagATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATG
TGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGGTACATTGAAATGCTTGAAGTATTTTTGCAGTAGAGAAATGGGTGTTTTAGTTTGTTGGTAGGAGTTGTTATTGAAATTGCTGAGACAGTGGATGTAATTGAGTTTGCAATCAATATTTG
GCATCACAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGC
CAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTG
TGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTT
GGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATC
AGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGA
CTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGG
TTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTAAAAGAAGAGAACATGAAATTGAAAAAGCAACAGG
CGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAA
GGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTA
CATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGCCAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAG
AACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATT
TACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCCTTGCATTTTGGTTGATTACGTAATAGAGATTTCAA
TAGATTTATCTGATGTCCAGAGTTTCTTTAGACTCAAGACTGTAGGTGTATTTGACATGCAAGCAATTATGACTAACGCATTGACACAACCAGGTCTCTCCGAAAATGAGCTGGATAATATGACTTAATACTGATGTATATGGGCAGCTTTAATTGAGTTCTCATCGACATTTTTGAGCTATATTTTCTGGATCTTGCAT
TTTTAATTAGTG
Intron 8 GTATCTCTCA ... GGCTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.88 | 29.5 | 29.4 | 51 |
| A2 | 44.22 | 39 | 27.3 | 34 |
| A3 | 55.08 | 27.5 | 25.2 | 42 |
| A4 | 59.61 | 17.2 | 11.3 | 39 |
| A5 | 56.74 | 14.1 | 16.4 | 20 |
| A6 | 57.65 | 5.9 | 2 | 14 |
| A7 | 37.61 | 22.2 | 12.5 | 14 |
| A8 | 76.29 | 3.1 | 0 | 20 |
| A9 | 44.09 | 17.3 | 10.3 | 17 |
| A10 | 42 | 26.1 | 14.8 | 23 |
>TRINITY_DN121701_c0_g1_i4 from sample A1 / Example spliced isoformGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTG
GAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGGTACATTGAAATGCTTGAAGTATTTTTGCA
GTAGAGAAATGGGTGTTTTAGTTTGTTGGTAGGAGTTGTTATTGAAATTGCTGAGACAGTGGATGTAATTGAGTTTGCAATCAATATTTGGCATCACAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAG
GCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAAT
GGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGC
AGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAG
GGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCT
GCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGAT
CGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGAT
CTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGG
TGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTT
GGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTA
CTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTT
TGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAA
CAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
>TRINITY_DN121701_c0_g1_i7 from sample A1 / Example unspliced isoform:GGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGgtatctctcacacacttggcggaccgtgaaaaaaaatgcatgtgggtgtgtgtct
ttgtagttgagggtgatgatgattgtattgtattgtttctcgtgatgcagaaaaactcactctgctgtcatggctgcccgtggattcaataattttttgtttttttatttttgtgttgccgtaatgttttaatatgataggtcgtcgtcgtggctgttcagATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGT
GGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGAACTTGGAAGATTA
TATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAGGCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATG
AATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAATGGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAG
CAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGCAGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATA
GACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAGGGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTT
AACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCTGCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGG
AAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGATCGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAA
GGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGATCTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAA
AAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGGTGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATG
CAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTTGGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTA
ATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTACTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATA
TTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTTTGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACT
GTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAACAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
Intron 9 GTATCTCTCA ... GGCTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.07 | 31 | 42 | 31 |
| A2 | 43.06 | 41 | 33 | 29 |
| A3 | 54.33 | 29 | 33 | 36 |
| A4 | 48.57 | 18 | 18 | 16 |
| A5 | 57.75 | 15 | 22 | 19 |
| A6 | 42.86 | 6 | 3 | 6 |
| A7 | 43.9 | 23 | 17 | 19 |
| A8 | 75 | 3 | 5 | 13 |
| A9 | 40 | 18 | 11 | 13 |
| A10 | 46 | 27 | 23 | 23 |
>TRINITY_DN121701_c0_g1_i4 from sample A1 / Example spliced isoformGGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTG
GAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGCATCAGGGTACTTCAGATCTGGAACTTTATCAGGTACATTGAAATGCTTGAAGTATTTTTGCA
GTAGAGAAATGGGTGTTTTAGTTTGTTGGTAGGAGTTGTTATTGAAATTGCTGAGACAGTGGATGTAATTGAGTTTGCAATCAATATTTGGCATCACAGAACTTGGAAGATTATATTGAAGATAGTTTGATCAATGGGTTCTCAGACTGAGTCTCGTGTAATGGTATCATCCCATAGTGCAATGACGCCTGCTCTTCAAG
GCGGAGCAAAGATGGGAGGGTTTCCATTGGCTAGACAGACTTCTATATATTCGTTGACATTAGATGAGTTTCAGAATAGTCTTGGTGAGCCAGGGAAGAATTTTGGGTCCATGAATATGGATGAGTTTCTTAAGAATATATGGACTGCAGAGGAAAGCCAGGCTATGGCTGCAGCAATGGGGGCAGTAGAAGGGGGAAAT
GGGGCTAATCTTCAGAGGCAGAGCAGTTTGCAGAGACAGGGGTCGTTGACTCTGCCCAGGACTCTGAGTAGGAGGACTGTGGATGATGTGTGGAGAGAGATTCACAAGGAAAGCAGTGATGTGAATGGGAATGCGCCTGCGGGTCAGGCCAGGCAGCCGACTTTCGGAGAGATGACATTGGAGGATTTCTTAGTGAAAGC
AGGGGTTGTGAGAGAGGATTCAGAACAGGGTGCGGCGCAGTCATTTGGGGCGTTTCGGAATGCTCTAGAGGGGGAATTCCCTGCAAATTTGGCAGAAAGAAATGGTGATAATAGACTGGGTATTGGCAATTCACTTGGGCTTGGATTCAGTGAAAGAGGTCATAGGAATGGAGAAGTGGGTAATAATAAGAGTGGACCAG
GGGGTGTTTCTGGACTCTCTCTGTCTCCTACAAATGTTATTCCTAATCATGCCACTATGGATATGGTGAATCTGGATGCCTTCAAACATCAGCAGCAGCAAACTGACTGGCTTAACAATCACTACAGAAATGCAACCGCTGCTGCCCTTGCTCAGCAGCAACATCAACAGCAGCAGCAGCAGCTTCTCCACCATCAGGCT
GCTGCAGAGGCGGCTGCTGCTTATGCCACAAATGTGAAGAGGGTCGGTGGGAATGCGGCATTGATGGGTCAGGGTGGTCTTGGAGGGGGACTTGCTCTGGGAGGTGCAATGGGAAATGGGGGCCTCGGCGGTGGATTGGGAGGGGTTGGTGGTCTCGGCGGTGGATTGGGTGGGGGATTTGGACCTTCGGCGCTCGCGAT
CGGAGCAGGATCGCCTGCCAGCCCTCTTTCATCAGATGGTGTTGGCCCAAGCCATTTAGACAACCCTACAATATCACCTGTTCCATATGGTTTCGATGGAGGGATGCGGGGAAGGAAAAGAGGTTTAGATGGACCGGTTGAGAAAGTTGTAGAAAGGCGCCAGAGGCGAATGATAAAAAACAGAGAGTCAGCTGCTAGAT
CTCGAGCTCGAAAACAGGCTTATACGGTAGAGTTGGAAGCTGAAGTAAATCAACTCAAAGAAGAGAACATGAAATTGAAAAAGCAACAGGCGGAAATGGCAGAGCGGCGCAAAAAGCAGATTCAGGAGGTGATGGCTCCCGTGGCAAAACAGTTAGAAACAAAAACAAGACCTCTGAGGAGAACACTAACTGGGCCGTGG
TGAAGGTTGTTGTGCAGTGGGATATATACAGCGTAGTCCAAATTCAGGTTATCCATCTTTCTCTTAAGTGGTGCACTGGAGAAAATTAAAGGTAAACAGCTCCCAAACTGATGCAAAAGACAGCTATTGCAGATTGGTTCATAATGATTTGAGCCTAAGTTATAAAAGATCACTGATCAGCAGTTGCAGTCATGAATGTT
GGCATCTCCACAGGAGATAGTGTCATCGGCCTCTAGGTCCTGGAGCAAAGCCACAGCAATTGAAAATGTTGAGGCAAAACTTCTTCTGTACATTTATTGAGCCAATTCATCTAATATTGTTGGTAGAAACCAACATTAAAAAGGTAAGCTCATAGCTTAGTGTAGCTTCAAAGAATTATGAAAAGTATAATGGGACAGTA
CTATGAATAAAGTACCTTCATATGTTCTTATAATTGCATGAACCTGTGTCCCTCGCACATTCTTGTGCACGAGCCCACTGGTATTGGGAGAACTCAGTTTGCAAACCTACATATTTCATATTTGTGATACTTGCAAGTGTGTGCTACTTAATATGTTGTCTGCCCCCTCTTTATATTTCTTGGAATTTTAGGTTTCAGTT
TGAACAAAAAATAAGTAAATGGGAGATTGCGAAGTTAAAAGGGACTTTGCAAATTATACAGAATCTGGAGAAATAATTGTCAGGTACATTTACTGGTGCATTTACTGGTAACTGTATTTTTAAGACAAGAAGATGATCTCATGTCTCTGCCTATGAAATGCTACCATGTCAAAGATACATGTATTTATGATTTTGACAAA
CAAAAAAATTGCCAAGGTACATTTCCTGCATTTTTTTATTCAGATATATTTTTCC
>TRINITY_DN121701_c0_g1_i8 from sample A1 / Example unspliced isoform:GGGAGGGGTGTGTTTATCTGGGATCGTAGCGGGGAGATTGGAATTTATAAGAGAAGGGAAGGCCGGCACTCAAAGATCCGATGATCGAATCCAGGGAAGTTATCGAGAGGGGGAAATTGCAGCTGTTCTTGTGACTCGTGGCGAGgtatctctcacacacttggcggaccgtgaaaaaaaatgcatgtcgtcgtcgtggc
tgttcagATATTTTTCCGGGGATTAATGCTCGCTCATGTTGGTGGTGGTGAATTCTAAGCTGGAGCTGACCACGGAATTACGGATATTTGCAGATATATGTCTGTGATTTCGTAGATGGGATGCTGGAGGTATAAAGCCTTGACAGGTGATGTGAAGAGTTCGACTCCCAAGATCTTGATAGCTAGGCTCTGATCTAAGC
ATCAGGGTACTTCAGATCTGGAACTTTATCAG