sp|Q9MBG8|AAR3_ARATH ----> Defective in cullin neddylation protein AAR3
Intron 1 GTTGTTTCGC ... CTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.01 | 10 | 38 | 29 |
| A2 | 81.97 | 5 | 24 | 21.5 |
| A3 | 81.54 | 6 | 19 | 34 |
| A4 | 67.5 | 13 | 30 | 24 |
| A5 | 61.82 | 4 | 5 | 8 |
| A6 | 76.56 | 14 | 32 | 59.5 |
| A7 | 74.81 | 26 | 45 | 109.5 |
| A8 | 79.57 | 17 | 45 | 87.5 |
| A9 | 72.19 | 31 | 67 | 94 |
| A10 | 76.53 | 22 | 56 | 87.5 |
>TRINITY_DN42756_c0_g1_i7 from sample A9 / Example spliced isoformGTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCA
AGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAG
>TRINITY_DN42756_c0_g1_i2 from sample A9 / Example unspliced isoform:GTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGgttgtttcgcagagtctgaaaggtataagaacaagcggatgatgtgattatccatatgaggtcttcatggaagaactttgctagtagcaggcact
ctgcacttagtggtcttcgcactcttaagtcccagcttgattcaaatcagcagttgatgttggattcttatcgatttgcattgttctatcggtttgtcttctttatttgctgtgaacctggacaaaaaaaccttgatctcagcacagctatagaggcctggaggttggtattggctggaaaatttcgattgcttgatcag
tggtgtgactttgtacagAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAG
Intron 2 GTTGTTTCGC ... CTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.01 | 10 | 20 | 29 |
| A2 | 77.27 | 5 | 14 | 20 |
| A3 | 77.36 | 6 | 7 | 34 |
| A4 | 58.73 | 13 | 14 | 23 |
| A5 | 65.22 | 4 | 6 | 9 |
| A6 | 73.58 | 14 | 21 | 57 |
| A7 | 72.49 | 26 | 31 | 106 |
| A8 | 76.39 | 17 | 25 | 85 |
| A9 | 67.54 | 31 | 40 | 89 |
| A10 | 74.12 | 22 | 40 | 86 |
>TRINITY_DN42756_c0_g1_i7 from sample A9 / Example spliced isoformGTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCA
AGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAG
>TRINITY_DN42756_c0_g1_i5 from sample A9 / Example unspliced isoform:GTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGgttgtttcgcagagtctgaaagggcactctgcacttagtggtcttcgcactcttaagtcccagcttgattcaaatcagcagttgatgttggattc
ttatcgatttgcattgttctatcggtttgtcttctttatttgctgtgaacctggacaaaaaaaccttgatctcagcacagctatagaggcctggaggttggtattggctggaaaatttcgattgcttgatcagtggtgtgactttgtacagAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGG
AATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGTAACAATCATTACCTTTCGGCAGTTTTTCTGTTCTAAATCCACTGTTATGAAGTACCCTTGCTGTAACTGTATGATACTGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGCAGGTTAGGTTTCAGTAACTACACCC
ATATTTCAAATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAG
ATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTA
TCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAA
TTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGTCTGTCTT
CAGATCATTGTATGTATTTTGTTCCTGCACATAAGAATGGGCCGTCAG
Intron 3 GTGCCTGGCC ... CTTTTTGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55 | 9 | 11 | 0 |
| A2 | 61.54 | 5 | 8 | 0 |
| A3 | 58.82 | 14 | 20 | 1 |
| A4 | 53.57 | 13 | 15 | 4 |
| A5 | 75 | 2 | 6 | 1 |
| A6 | 76.32 | 9 | 29 | 5 |
| A7 | 59.09 | 36 | 52 | 3 |
| A8 | 48.08 | 27 | 25 | 1 |
| A9 | 57.89 | 48 | 66 | 3 |
| A10 | 61.86 | 37 | 60 | 6 |
>TRINITY_DN103732_c0_g1_i4 from sample A4 / Example spliced isoformATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGA
TCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCGTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGA
TGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAG
CTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTTAGGTTTCAGTAACTACACCCATATTTCAA
ATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTATATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATC
ATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATC
TCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGAAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAAC
>TRINITY_DN103732_c0_g1_i6 from sample A4 / Example unspliced isoform:ATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGA
TCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCGTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGA
TGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAG
CTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGgtgcctggcctcttctcattgatgaatttgtc
agtgacatgcataggtacagactacagttgatgccctttatagtggcaaccttgcaaagttgtcactttttggagGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGATTGTTTTGGCATTGTCATGGATTTTGTTTCAAACAGGCTTGAGATCATCTGTTGGTCA
Intron 4 GTGTCTATGA ... GCTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.84 | 25.7 | 5.9 | 5.3 |
| A2 | 29.48 | 17.5 | 4.1 | 7.3 |
| A3 | 17.07 | 13.8 | 6.3 | 2.6 |
| A4 | 36.69 | 22.2 | 3.3 | 13 |
| A5 | 36.94 | 3.5 | 0 | 2 |
| A6 | 31.18 | 33 | 9.7 | 14.9 |
| A7 | 29.48 | 47.3 | 9.6 | 20 |
| A8 | 26.14 | 42.3 | 9.5 | 15.3 |
| A9 | 25.67 | 60.7 | 17.5 | 20.9 |
| A10 | 16.94 | 68.7 | 11.2 | 14.3 |
>TRINITY_DN103732_c0_g1_i6 from sample A4 / Example spliced isoformATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGA
TCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCGTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGA
TGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAG
CTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTC
AGTGACATGCATAGGTACAGACTACAGTTGATGCCCTTTATAGTGGCAACCTTGCAAAGTTGTCACTTTTTGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGATTGTTTTGGCATTGTCATGGATTTTGTTTCAAACAGGCTTGAGATCATCTGTTGGTCA
>TRINITY_DN103732_c0_g1_i7 from sample A4 / Example unspliced isoform:ATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGA
TCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCGTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGA
TGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGgtgtctatgaaacactccctttatttctctattttgtgtggggttgtaaaatgccaaaggagtgttgtaaatatattttgattttaca
tcgactctcatttggtttatttaaagcagtggttgtgatggatcctctcaactgttgctattgcttgtacagTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGGTAAGTGTTATATACTGAAGATTTATCTGTTTCTATTCATATCTCTTATTTT
TGTTAGCTGTAGAGAACAATTAGTGGACTGGCAGAGAGTTCATTTTTCACTTGGAACTGTGACGACATTATCCTCTCCACCAACGAGTCAAAGAAAAAGATGGGGCTATGCAATAGAGAGAAGCAATGTGCTTCACACCTGGAAAAGAAAAAGCTTTTGCTCCACTCTCATCTCTTATCTGAATTATTAAATAGGGATTT
AGGTAATTAAGAAGTACCCAGATCATCATTACCAGCAAGATTTTCTGAATCTATCCTATTAAATGAGAGCTGGCCCAATTGAGTCCTTAAGAC
Intron 5 GCACTCTGCA ... CTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.31 | 9 | 24 | 28.7 |
| A2 | 75.4 | 6.3 | 17 | 21 |
| A3 | 82.64 | 5 | 16 | 33.7 |
| A4 | 61.68 | 13.3 | 20 | 23.7 |
| A5 | 76.77 | 2.7 | 6.7 | 7.7 |
| A6 | 75.49 | 14.7 | 32 | 58.7 |
| A7 | 76.26 | 23 | 41 | 108.7 |
| A8 | 79.5 | 15.7 | 37 | 85.7 |
| A9 | 71.88 | 28.7 | 55.7 | 93 |
| A10 | 80.07 | 19.7 | 71.7 | 87.3 |
>TRINITY_DN116046_c0_g1_i5 from sample A2 / Example spliced isoformGCGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTT
CAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGTATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTG
ATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGATGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTT
TTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGAGCGGAAAGATTGTTTTGGCATTGTCATGGATTTTGTTTCAAACAGGC
TTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGA
GATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATT
TTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGG
ATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAAAA
>TRINITY_DN116046_c0_g1_i8 from sample A2 / Example unspliced isoform:GCGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTAACGTATGTTACGATTACTACAAATATATAAACAAGTGTCGACTTACTTT
CAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGTATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTG
ATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGATGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGgcactctgcacttagtggtcttcgcactcttaagtcccagcttga
ttcaaatcagcagttgatgttggattcttatcgatttgcattgttctatcggtttgtcttctttatttgctgtgaacctggacaaaaaaaccttgatctcagcacagctatagaggcctggaggttggtattggctggaaaatttcgattgcttgatcagtggtgtgactttttacagAAAAATTCCCAGTATAATATAT
CCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGAGCGGAAAGATTGTTTTGGCATTGT
CATGGATTTTGTTTCAAACAGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATC
ATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAA
ATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGG
CATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAAAA
Intron 6 GTGCCTGGCC ... TGCATAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.57 | 9 | 12 | 5 |
| A2 | 76.19 | 5 | 16 | 16 |
| A3 | 54.84 | 14 | 21 | 13 |
| A4 | 54.39 | 13 | 16 | 15 |
| A5 | 80 | 2 | 9 | 7 |
| A6 | 76 | 9 | 32 | 25 |
| A7 | 62.69 | 36 | 71 | 50 |
| A8 | 60.58 | 27 | 42 | 41 |
| A9 | 61.45 | 48 | 81 | 72 |
| A10 | 65.09 | 37 | 82 | 56 |
>TRINITY_DN103732_c0_g1_i4 from sample A4 / Example spliced isoformATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGA
TCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCGTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGA
TGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAG
CTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTTAGGTTTCAGTAACTACACCCATATTTCAA
ATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTATATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATC
ATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATC
TCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGAAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAAC
>TRINITY_DN103732_c0_g1_i10 from sample A4 / Example unspliced isoform:ATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGA
TCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCGTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGGCACTCTGCACTTAGTGGT
CTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTT
ACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGgtgcctggcctcttctcattgatgaatttgtcagtgacatgcataggagGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTG
GCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTATATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGT
GAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGA
TTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGAAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAAC
Intron 7 GTGTCTATGA ... TTTAAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 3 | 0 |
| A2 | 100 | 0 | 0 | 2 |
| A3 | 100 | 0 | 1 | 0 |
| A4 | 100 | 0 | 0 | 5 |
| A5 | 33.33 | 2 | 0 | 2 |
| A6 | 76.47 | 2 | 6 | 7 |
| A7 | 83.33 | 1 | 7 | 3 |
| A8 | 84.62 | 1 | 8 | 3 |
| A9 | 82.61 | 2 | 9 | 10 |
| A10 | 100 | 0 | 8 | 3 |
>TRINITY_DN41190_c1_g1_i8 from sample A6 / Example spliced isoformTTGTTTCGCAGAGTCTGAAAGGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTGGTTGTGATGGATCCTCTCAACTGTTGCTATTGCTTGTACAGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAA
CCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTGTACAGATTTGGGGTACTTGAGTAGATCTAGGCACACAAAGCAATGTAATGATACAAGAAGAGAGTTTCCATTAGAAGTCTTTCCACTGAAAAATTCCCAGTATAATATATCCAAGGA
CACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGTACAGACTACAATTGATGCCCTTTATAGTGGCAACCTTGCAAAGTTGTCACTTTTTGGTACACCAACACTCTAGACTCTAGAGTC
TAGAGCATCCTTTTTGGGGTTTAACAAAAAATGCAGATTTGGCATCTCCGATGACAATGTTGTTTGTGCAGTTTTATGAATTTCTTCTCTTTGGTAGCATCAGAACCGAATTACATTTGTATCATATAACCATCTCTAAGAAATAATTGAATCTGTTCCTCTTCTCCATTGCAGAGCTTATTATGTCCTGTTGGTTTTAG
ACATGCAACATAAAGAGCTCTTTGTACTCATTCGTTAGTGCCACCACAATTTCCAAATGTGACTTGCCAATTAGTGGAAATTTTTCTGACCCTGATTACACCATGCTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGA
AGACACTGGAAATTATATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCA
ATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGAAAT
GTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCA
TCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGTCTGTCTTCAGATCATTGTATGTATTTTGTCC
>TRINITY_DN41190_c1_g1_i4 from sample A6 / Example unspliced isoform:CAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGA
GGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGgtgtctatgaaacactccctttatttctct
attttgtgtggggttgtaaaatgccaaaggagtgttgtaaatatattttgattttacatcgactctcatttggtttatttaaagcagTGGTTGTGATGGATCCTCTCAACTGTTGCTATTGCTTGTACAGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAA
ACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTT
Intron 8 GTGCCTGGCC ... ACATGCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 9 | 5 | 4 |
| A2 | 79.31 | 3 | 12 | 11 |
| A3 | 42.86 | 14 | 11 | 10 |
| A4 | 44.68 | 13 | 13 | 8 |
| A5 | 80 | 2 | 8 | 8 |
| A6 | 70.49 | 9 | 22 | 21 |
| A7 | 52.11 | 34 | 40 | 34 |
| A8 | 51.35 | 27 | 29 | 28 |
| A9 | 51.83 | 46 | 50 | 49 |
| A10 | 57.23 | 37 | 53 | 46 |
>TRINITY_DN46895_c0_g1_i14 from sample A7 / Example spliced isoformTTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCG
ACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTG
ACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGATGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTC
CCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGT
ATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTA
TCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATA
CTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTT
CAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATAT
TGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGCG
>TRINITY_DN46895_c0_g1_i2 from sample A7 / Example unspliced isoform:TTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGgtgcctggcctcttctcattgatgaat
ttgtcagtgacatgcatagGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGATTGTTTTGGCATTGTCATGGATTTTGTTTCAAACAGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAA
TAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCA
TGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTC
CAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGG
ATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGCG
Intron 9 GTACAGACTA ... TTTCAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.09 | 10 | 1 | 1 |
| A2 | 26.53 | 18 | 4 | 9 |
| A3 | 15.79 | 16 | 3 | 3 |
| A4 | 12 | 11 | 1 | 2 |
| A5 | 23.81 | 16 | 3 | 7 |
| A6 | 26.15 | 24 | 6 | 11 |
| A7 | 23.08 | 60 | 13 | 23 |
| A8 | 23.58 | 47 | 14 | 15 |
| A9 | 17.89 | 78 | 10 | 24 |
| A10 | 28.47 | 49 | 21 | 18 |
>TRINITY_DN44656_c0_g2_i2 from sample A8 / Example spliced isoformCACAGGGTGATGTTGGATTTATAACCTGATGTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGG
GAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCA
TTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGATGTGATTATCCATATGAGGTCTT
CATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTA
TTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTGTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGTAACAATCATTACCTTTCGGCAGTTTTTCTGTTCTAAATCCACTGTTATGAAGTA
CCCTTGCTGTAACTGTATGATACTGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCC
AGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGAT
CCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATT
CTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATA
TTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGTCTGTCTTCAGATCATTGTATGTATTTTGTTCCTGCACATAAGAA
>TRINITY_DN44656_c0_g2_i8 from sample A8 / Example unspliced isoform:TTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTGTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACA
GCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGgtacagactacaattgatgccctttatagtggcaaccttgcaaag
ttgtcactttttggtacaccaacactctagactctagagtctagagcatcctttttggggtttaacaaaaaatgcagatttggcatctccgatgacaatgttgtttgtgcagttttatgaatttcttctctttggtagcatcagaaccgaattacatttgtatcatataaccatctctaagaaataattgaatctgttcc
tcttctccattgcagagcttattatgtcctgttggttttagacatgcaacataaagagctctttgtactcattcgttagtgccaccacaatttccaaatgtgacttgccaattagtggaaatttttctgaccctgattacaccatgctgtgcaaagtattttataagtgatatgcaattatcattttttctgcaattggt
ggcttagccttgggaatagccatcttctaacagagtgaatgtttaggtgcctaattgatataattataaatggttttacttgttttggtcttggaaagcagagcggaaagattgttttggcattgtcatggattttgtttcaaacagGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACT
GGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCA
CAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCA
ACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCA
TTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGTCTGTCTTCAGATCATTGTATGTATTTTGTTCCTGCACATAAGAA
Intron 10 GTTGTTTCGC ... CTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.01 | 10 | 38 | 29 |
| A2 | 82.46 | 5 | 24 | 23 |
| A3 | 81.54 | 6 | 19 | 34 |
| A4 | 67.9 | 13 | 30 | 25 |
| A5 | 60 | 4 | 5 | 7 |
| A6 | 77.05 | 14 | 32 | 62 |
| A7 | 75.24 | 26 | 45 | 113 |
| A8 | 79.76 | 17 | 45 | 89 |
| A9 | 72.81 | 31 | 67 | 99 |
| A10 | 76.72 | 22 | 56 | 89 |
>TRINITY_DN42756_c0_g1_i7 from sample A9 / Example spliced isoformGTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCA
AGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAG
>TRINITY_DN42756_c0_g1_i12 from sample A9 / Example unspliced isoform:GTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGgttgtttcgcagagtctgaaaggtataagaacaagcggatgatgtgattatccatatgaggtcttcatggaagaactttgctagtagcaggcact
ctgcacttagtggtcttcgcactcttaagtcccagcttgattcaaatcagcagttgatggtgtctatgaaacactccctttatttctctattttgtgtggggttgtaaaatgccaaaggagtgttgtaaatatattttgattttacatcgactctcatttggtttatttaaagcagtggttgtgatggatcctctcaact
gttgctattgcttgtacagttggattcttatcgatttgcattgttctatcggtttgtcttctttatttgctgtgaacctggacaaaaaaaccttgatctcagcacagctatagaggcctggaggttggtattggctggaaaatttcgattgcttgatcagtggtgtgactttttacagAAAAATTCCCAGTATAATATAT
CCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAG
Intron 11 GTAAATATAT ... GCTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 6 |
| A2 | 100 | 0 | 2 | 8 |
| A3 | 75 | 1 | 1 | 3 |
| A4 | 100 | 0 | 5 | 14 |
| A5 | 100 | 0 | 0 | 2 |
| A6 | 100 | 0 | 5 | 16 |
| A7 | 88 | 3 | 3 | 22 |
| A8 | 100 | 0 | 2 | 17 |
| A9 | 100 | 0 | 5 | 23 |
| A10 | 100 | 0 | 2 | 16 |
>TRINITY_DN46895_c0_g1_i4 from sample A7 / Example spliced isoformTTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCG
ACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTG
ACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGATGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTC
CCAGCTTGATTCAAATCAGCAGTTGATGGTGTCTATGAAACACTCCCTTTATTTCTCTATTTTGTGTGGGGTTGTAAAATGCCAAAGGAGTGTTTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGA
>TRINITY_DN46895_c0_g1_i13 from sample A7 / Example unspliced isoform:TTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTTATGATTACTACAAATATATAAACAAGTGTCG
ACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTG
ACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGTTGTTTCGCAGAGTCTGAAAGGTATAAGAACAAGCGGATGATGTGATTATCCATATGAGGTCTTCATGGAAGAACTTTGCTAGTAGCAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTC
CCAGCTTGATTCAAATCAGCAGTTGATGGTGTCTATGAAACACTCCCTTTATTTCTCTATTTTGTGTGGGGTTGTAAAATGCCAAAGGAGTGTTgtaaatatattttgattttacatcgactctcatttggtttatttaaagcagtggttgtgatggatcctctcaactgttgctattgcttgtacagTTGGATTCTTAT
CGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATT
CACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTC
AAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAG
GGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCA
TGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATAT
ACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGCG
Intron 12 GTTGTTTCGC ... CTAGTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.86 | 20 | 13 | 17 |
| A2 | 44.68 | 13 | 6 | 15 |
| A3 | 53.49 | 10 | 7 | 16 |
| A4 | 50.82 | 15 | 14 | 17 |
| A5 | 41.67 | 7 | 5 | 5 |
| A6 | 32.5 | 27 | 9 | 17 |
| A7 | 42.06 | 31 | 15 | 30 |
| A8 | 36.08 | 31 | 16 | 19 |
| A9 | 41.56 | 45 | 29 | 35 |
| A10 | 31.55 | 64 | 22 | 37 |
>TRINITY_DN42756_c0_g1_i8 from sample A9 / Example spliced isoformGTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATC
GGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGA
AATCTCAAAGGCTATGATCCTCAAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACC
AGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATCATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTAC
TAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAAATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTG
GTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGGCATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAG
AGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAGTCTGTCTTCAGATCATTGTATGTATTTTGTTCCTGCACATAAGAATGGGCCGTCAG
>TRINITY_DN42756_c0_g1_i3 from sample A9 / Example unspliced isoform:GTCTGAGATAATAGACAGTGTAAACGACATATTTTGCCAAATGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTCACGTATGTT
ATGATTACTACAAATATATAAACAAGTGTCGACTTACTTTCAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGAATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATG
GATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTGATGAATATTGCGATATTGCGCATTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGgttgtttcgcagagtctgaaaggggtgccttgcttgtctgtgtatctggttaataactgttatcttgatgaattttgtggattactatgtgtggc
cagtataagaacaagcggatgatgtgattatccatatgaggtcttcatggaagaactttgctagtagcagGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGGTGTCTATGAAACACTCCCTTTATTTCTCTATTTTGTGTGGGGTTGTAAAATGCCAAAGGAGTGTT
GTAAATATATTTTGATTTTACATCGACTCTCATTTGGTTTATTTAAAGCAGTGGTTGTGATGGATCCTCTCAACTGTTGCTATTGCTTGTACAGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGT
TGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTGTACAGATTTGGGGTACTTGAGTAGATCTAGGCACACAAAGCAATGTAATGATACAAGAAGAGAGTTTCCATTAGAAGTCTTTCCACTGAAAAATTCCCAGTATAATATATCCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTG
AACCCGGAAATCTCAAAGGCTATGATCCTCAAGTAACAATCATTACCTTTCGGCAGTTTTTCTGTTCTAAATCCACTGTTATGAAGTACCCTTGCTGTAACTGTATGATACTGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGTACAGACTACAATTGATGCCCTTTATAGTGGCAACCTTGC
AAAGTTGTCACTTTTTGGTACACCAACACTCTAGACTCTAGAGTCTAGAGCATCCTTTTTGGGGTTTAACAAAAAATGCAGATTTGGCATCTCCGATGACAATGTTGTTTGTGCAGTTTTATGAATTTCTTCTCTTTGGTAGCATCAGAACCGAATTACATTTGTATCATATAACCATCTCTAAGAAATAATTGAATCTG
TTCCTCTTCTCCATTGCAGAGCTTATTATGTCCTGTTGGTTTTAGACATGCAACATAAAGAGCTCTTTGTACTCATTCGTTAGTGCCACCACAATTTCCAAATGTGACTTGCCAATTAGTGGAAATTTTTCTGACCCTGATTACACCATGCTGTGCAAAGTATTTTATAAGTGATATGCAATTATCATTTTTTCTGCAAT
TGGTGGCTTAGCCTTGGGAATAGCCATCTTCTAACAGAGTGAATGTTTAGGTGCCTAATTGATATAATTATAAATGGTTTTACTTGTTTTGGTCTTGGAAAGCAGCTTTGATACCACTTGTAATATACCAATATATGAAAATACAATCACATAAGATAACACAATAGATACC
Intron 13 GTTGTTTCGC ... CTAGTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.3 | 20 | 38 | 31 |
| A2 | 65.17 | 13 | 24.3 | 24.3 |
| A3 | 69.35 | 10 | 19 | 26.3 |
| A4 | 66.66 | 14.7 | 30 | 28.7 |
| A5 | 43.22 | 7 | 5 | 5.7 |
| A6 | 56.62 | 27 | 32 | 38.7 |
| A7 | 61.86 | 31 | 45.7 | 55.3 |
| A8 | 59.15 | 31 | 45 | 45 |
| A9 | 60.1 | 45.3 | 67 | 70 |
| A10 | 50.3 | 64 | 56 | 74.7 |
>TRINITY_DN116046_c0_g1_i1 from sample A2 / Example spliced isoformGCGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTAACGTATGTTACGATTACTACAAATATATAAACAAGTGTCGACTTACTTT
CAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGTATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTG
ATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGATTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAA
CCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAG
>TRINITY_DN116046_c0_g1_i8 from sample A2 / Example unspliced isoform:GCGCGCTCTCTCTCTTCACCCTTCACCAACCGAAGTCACGTTCACTGGCCTTCACGAACTGCAATTTGGAGAACAATACTATCGTCAAAGCTTTTTAGCCGAACAAAATAAAAGGTTCCATTTGACGAGGGAGACGAAGAGACATAGATTAACGTATGTTACGATTACTACAAATATATAAACAAGTGTCGACTTACTTT
CAAACTGAGTAACTTAAGCGCGCAAGGTGGGAGGGCGCTTGACTTGCTTCAGAAGCTGTATTGATCTAACCACAAGATCTGAAGCCAACCCAATTCTCCCCTCCAGATCCAGATCATATAATTCCTCGCATTATCACAACCATACCAGGGATCTCTTATGGATTTGAATGTTGATGGAGAGAGGATGGCTGACATGTTTG
ATGAATATTGCGATATTGCGCGTTTGGACGAGTCTAGGTCAGCAATGGCTCAGTTTTCAAAGAAGgttgtttcgcagagtctgaaaggtataagaacaagcggatgatgtgattatccatatgaggtcttcatggaagaactttgctagtagcagGCACTCTGCACTTAGTGGTCTTCGCACTCTTAAGTCCCAGCTTGA
TTCAAATCAGCAGTTGATGTTGGATTCTTATCGATTTGCATTGTTCTATCGGTTTGTCTTCTTTATTTGCTGTGAACCTGGACAAAAAAACCTTGATCTCAGCACAGCTATAGAGGCCTGGAGGTTGGTATTGGCTGGAAAATTTCGATTGCTTGATCAGTGGTGTGACTTTTTACAGAAAAATTCCCAGTATAATATAT
CCAAGGACACTTGGCAACAGCTTTTGGAATTCACTCAACGTGAACCCGGAAATCTCAAAGGCTATGATCCTCAAGGTGCCTGGCCTCTTCTCATTGATGAATTTGTCAGTGACATGCATAGGAGGTTAGGTTTCAGTAACTACACCCATATTTCAAATGCATTGGTGTTTCCTGGAGCGGAAAGATTGTTTTGGCATTGT
CATGGATTTTGTTTCAAACAGGCTTGAGATCATCTGTTGGTCATAAGAGAAGTTACTCCACTGAGGAAGACACTGGAAATTGTATCAGTGAGAGGCCAGAAGCAATGCCAAATAATTTGTGTTCAAAACGATCCTGCTTAACCAGGAGATGGTTAACCAAAAACACCGAGTGACAGCATGAACTGGTAAAATAGATGATC
ATCATGACTATGTGGAAGGGTGAGATCAGAAGGTATGAGTTTATTGTCAGCAGTCTACATCGATGCAATGTGCACAATCAAATACTTTTGCAAGGATCCCAAAGAGATTCCATGATATGACAAGGGTGTGTGTCCGATTCTACTAAATTATGGAATTGCTTTTATCCAACCCCAATTTCAAATGGGACATTCTATCCAAA
ATCTCCAGGATTTAGCATGGATTTTTTGTTCAAATGATTAGTCGTTGTTTTTCCTACGGAACGGAATGTATCCAACCTCAATTTCAAATGGTACATTCTTATCCAAAATCTCCAGGACTTAGCATGGACCTTGTGTTCAATTGGTTAGTCATTGTTCAACCTATGGAACAGAATGTATCCAACCCCAATTTCAATTGGGG
CATTCTTATCCAAAATCTCCAGGATTAAGCATGGACCTTGTGATCAAATGGTTATAGTCATTGTTCATCCTCCATTCTGGATATTGTGATAAGAATATTATTTTATTAGGGGATCGAGCAATATACATGCATGTAAAGTGGAGAGCATTTTTTTTAGATGAAAAATAAGATCTAATGGTGTTTTAAAA