sp|Q9C5H9|GACP2_ARATH ----> Gamma-tubulin complex component 2
Intron 1 GTATGATTCA ... TTTTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.39 | 41 | 12 | 9 |
| A2 | 16.85 | 37 | 5 | 10 |
| A3 | 30 | 14 | 8 | 4 |
| A4 | 23.64 | 21 | 7 | 6 |
| A5 | 23.08 | 15 | 3 | 6 |
| A6 | 19.68 | 100 | 16 | 33 |
| A7 | 18.75 | 104 | 28 | 20 |
| A8 | 20.65 | 123 | 34 | 30 |
| A9 | 17.6 | 110 | 13 | 34 |
| A10 | 22.81 | 66 | 21 | 18 |
>TRINITY_DN101245_c0_g1_i3 from sample A4 / Example spliced isoformTTTCAATTGAAGTTTAAATACAAGGTAAAGGCATTCCTCTAACTGTAACTCGTGCGTACTGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTTTTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGA
GTTTTGATTCCATTCTAAGTCACGGAATAAGTGGAATAAGTGGGCCAAACATTATAGCGAACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAGCCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAA
GGTAGAGATTAAAGTTACCTAAAACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTGAGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTAGACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTT
TTCTCTGCTTATTACCTGCTTCAACAACTGCTGCATCCCGCCTAACAACAGGTGGAATGGACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTTCTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCAGGCTACTTCTAATCGTTCTCCAAAGTCT
GGAAATCAAGTTGGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATATCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGC
TCCACCAGTTCAGGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATTACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATC
TCTATGTGGAGTCAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGAACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTG
GTACAAAAAGCTTCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGGCAGCAGCTATGGCTGGTGACAATGCTGCAAGGTCATTACTTGAGAAACTCACACAACATGCATGCGCTCCATACCTTGGCATCCTAGAAAGGTGGGTGTATGAAGGAGTAATCGATGATCCATACTGGGAATTTTT
CATTGCTGAGAATAAGACTTTGCAAAAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACAAATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCATCATGTTCAGGTTCCCATTGCAGAAAATG
CCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCTTATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTT
GTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTT
AGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACAT
GGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCAT
GATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAA
GGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTC
TTGGAAAGGATTTTACCTTGAGGAGTTGGAAGATGTTAGGTTGAAGCTGTCTGTTACCAACCTATTTGTACCATAGTTGGATTATCTGAAGAGCTGCC
>TRINITY_DN101245_c0_g1_i6 from sample A4 / Example unspliced isoform:TTTCAATTGAAGTTTAAATACAAGGTAAAGGCATTCCTCTAACTGTAACTCGTGCGTACTGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTTTTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGA
GTTTTGATTCCATTCTAAGTCACGGAATAAGTGGAATAAGTGGGCCAAACATTATAGCGAACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAGCCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAA
GGTAGAGATTAAAGTTACCTAAAACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTGAGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTAGACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTT
TTCTCTGCTTATTACCTGCTTCAACAACTGCTGCATCCCGCCTAACAACAGGTGGAATGGACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTTCTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCAGGCTACTTCTAATCGTTCTCCAAAGTCT
GGAAATCAAGTTGGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATATCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGC
TCCACCAGTTCAGGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATTACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATC
TCTATGTGGAGTCAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGAACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTG
GTACAAAAAGCTTCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGGCAGCAGCTATGGCTGGTGACAATGCTGCAAGGTCATTACTTGAGAAACTCACACAACATGCATGCGCTCCATACCTTGGCATCCTAGAAAGGTGGGTGTATGAAGGAGTAATCGATGATCCATACTGGGAATTTTT
CATTGCTGAGAATAAGACTTTGCAAAAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACAAATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCATCATGTTCAGGTTCCCATTGCAGAAAATG
CCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCTTATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTT
GTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTT
AGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACAT
GGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGgtatgattcaaaatatgcatatctgtttgaagtcaagtgctcaggttctgactttgatataaatgatcaactggaatc
ctaactaaatttgtatgtttctaatcatgtctatttaattttgtgcattttgaacagGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGT
GGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATG
ATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTTACCTTGAGGAGTTGGAAGATGTTAGGTTGAAGCTGTCTGTTACCAACCTAT
TTGTACCATAGTTGGATTATCTGAAGAGCTGCC
Intron 2 GTGTGATCCT ... GCGCTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.89 | 66 | 10.5 | 18.2 |
| A2 | 18.54 | 39 | 9.5 | 14.4 |
| A3 | 9.9 | 49 | 5.5 | 18.4 |
| A4 | 6.76 | 53 | 4 | 13.8 |
| A5 | 12.9 | 23 | 4 | 4.8 |
| A6 | 7.54 | 45 | 4 | 7.2 |
| A7 | 8.93 | 69 | 7.5 | 9.6 |
| A8 | 9.83 | 51 | 6 | 10.6 |
| A9 | 11.1 | 74 | 10 | 21.2 |
| A10 | 7.05 | 67.1 | 5.5 | 9.6 |
>TRINITY_DN125567_c1_g1_i1 from sample A1 / Example spliced isoformACTCGGCGGGATTCGGAGGGCTTATCTTTCTCGCCCGCTTGCATTTTCGTCATTTTCACATTGTTTGTTGTTTTGTTAGGTGGAATGGACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTTCTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCA
GGCTACTTCTAATCGTTCTCCAAAGTCTGGAAATCAAGTTGGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATATCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGA
ATGTAGACAGAGCCGTTGGATCTTTTGCTCCACCAGTTCAGGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATTACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCT
TTGTGTGAGAACTATATTATAATTAATCTCTATGTGGAGTCAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGAACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGAT
GGGTGCAATGCAAGCTCTAACTGTAGTGGTACAAAAAGCTTCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGGCAGCAGCTATGGCTGGTGACAATGCTGCAAGGTCATTACTTGAGAAACTCACACAACATGCATGCGCTCCATACCTTGGCATCCTAGAAAGGTGGGTGTATGAAGGAG
TAATCGATGATCCATACTGGGAATTTTTCATTGCTGAGAATAAGACTTTGCAAAAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACAAATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCAT
CATGTTCAGGTTCCCATTGCAGAAAATGCCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCTTATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCA
CTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGT
CAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAA
CATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAA
GAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACA
CTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTG
GCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGCAATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTG
GACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAATAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGACTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATG
CA
>TRINITY_DN125567_c1_g1_i2 from sample A1 / Example unspliced isoform:AGGTAAAGGCATTCCTCTAACTGTAACTCGTGCGTACTGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTTTTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGAGTTTTGATTCCATTCTAAGTCA
CGGAATAAGTGGAATAAGTGGGCCAAACATTATAGCGAACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAGCCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAAGGTAGAGATTAAAGTTACCTAA
AACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTGAGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTAGACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTTTTCTCTGCTTATTACCTGCTTC
AACAACTGCTGCATCCCGCCTAACAACAGGTGGAATGGACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTTCTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCAGGCTACTTCTAATCGTTCTCCAAAGTCTGGAAATCAAGTTGGGGTTTCCA
AGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATATCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGCTCCACCAGTTCAGGAACTCTTT
GTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATTACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATCTCTATGTGGAGTCAAGGTCACA
CTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGAACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTGGTACAAAAAGCTTCTGTGAATA
ATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGGCAGCAGCTATGGCTGGTGACAATGCTGCAAGGTCATTACTTGAGAAACTCACACAACATGCATGCGCTCCATACCTTGGCATCCTAGAAAGGTGGGTGTATGAAGGAGTAATCGATGATCCATACTGGGAATTTTTCATTGCTGAGAATAAGACTTTG
CAAAAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACAAATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCATCATGTTCAGgtgtgatcctggcaactctgatatttgttaggcttctagta
caaaactctttcagatgaaaaccctcactgaaatcccagtataactttgagtatgcgcttacagGTTCCCATTGCAGAAAATGCCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCTTATTGCTA
GACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAG
AGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATC
AAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACAT
TTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTG
ATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGA
GATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGCAATTTTGT
GCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAATAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGACTTGTTTT
AAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATGCA
Intron 3 GCAGCAGCTA ... CCTTGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.05 | 28 | 89 | 42 |
| A2 | 60.24 | 33 | 63 | 37 |
| A3 | 78.95 | 14 | 51 | 54 |
| A4 | 67.74 | 15 | 43 | 20 |
| A5 | 69.23 | 8 | 18 | 18 |
| A6 | 68.97 | 18 | 43 | 37 |
| A7 | 64.1 | 35 | 74 | 51 |
| A8 | 71.68 | 16 | 42 | 39 |
| A9 | 62.83 | 42 | 66 | 76 |
| A10 | 62.39 | 41 | 73 | 63 |
>TRINITY_DN38300_c0_g1_i2 from sample A6 / Example spliced isoformTGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTTTTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGAGTTTTGATTCCATTCTAAGTCACGGAATAAGTGGAATAAGTGGGCCAAACATTATAGCG
AACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAGCCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAAGGTAGAGATTAAAGTTACCTAAAACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTG
AGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTAGACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTTTTCTCTGCTTATTACCTGCTTCAACAACTGCTGCATCCCGCCTAACAACAGGTGGAATG
GACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTTCTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCAGGCTACTTCTAATCGTTCTCCAAAGTCTGGAAATCAAGTTGGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCC
CCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATATCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGCTCCACCAGTTCAGGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCG
AAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATTACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATCTCTATGTGGAGTCAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCT
GCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGAACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTGGTACAAAAAGCTTCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAG
CCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTA
AAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTC
CGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTA
TGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTT
CTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGT
TCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGCAATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTT
TACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAATAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGACTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAA
CAACTGGATTTATAAAATATGCACCAATGTTCTAACAGTGGTCTTTCTGATTAAATTGTCCATACTAGTGAAAATCATATAAAAAACATCCTAACATATTTGATAATACAGATCTGTAAGTGG
>TRINITY_DN38300_c0_g1_i3 from sample A6 / Example unspliced isoform:TGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTTTTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGAGTTTTGATTCCATTCTAAGTCACGGAATAAGTGGAATAAGTGGGCCAAACATTATAGCG
AACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAGCCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAAGGTAGAGATTAAAGTTACCTAAAACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTG
AGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTAGACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTTTTCTCTGCTTATTACCTGCTTCAACAACTGCTGCATCCCGCCTAACAACAGATCAAGTT
GGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATATCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGCTCCACCAGTTCA
GGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATTACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATCTCTATGTGGAGT
CAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGAACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTGGTACAAAAAGCT
TCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGgcagcagctatggctggtgacaatgctgcaaggtcattacttgagaaactcacacaacatgcatgcgctccataccttggcatcctagaaaggtgggtgtatgaaggagtaatcgatgatccatactgggaatttttcattgctgagaa
taagactttgcaaaaggagagtctcactcaagactacaatgctaaatattggcaacaacgttacagcctcaagcctggtattccaagttttcttacaaatgcagcagaagcaattttgacaactggaaaatatttgaatgtcttgcgagaatgtggtcatcatgttcaggttcccattgcagaaaatgccaaattaacaa
attcagattctaaccgtccctatctagaatgcatcaatatagcctacaactttgccagtgcagagcttttaaatcttatcactcgaaagtatgatcttattgctagactgcgatctatgaagcattactttctccttgatcagGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCA
GCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAA
ATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATC
AGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTT
GATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAG
AACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATT
TGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGCAATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAA
TAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGACTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATGCACCAATGTTCTAACAGTGGTCTTTCTGATTAAATTGTCC
ATACTAGTGAAAATCATATAAAAAACATCCTAACATATTTGATAATACAGATCTGTAAGTGG
Intron 4 GTTCAAAGCA ... TGTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.49 | 38 | 14 | 12 |
| A2 | 28.17 | 51 | 18 | 22 |
| A3 | 32.58 | 30 | 4 | 25 |
| A4 | 21.88 | 25 | 9 | 5 |
| A5 | 25 | 18 | 5 | 7 |
| A6 | 24.1 | 137 | 32 | 55 |
| A7 | 26.63 | 124 | 29 | 61 |
| A8 | 26.18 | 172 | 39 | 83 |
| A9 | 23.81 | 128 | 33 | 47 |
| A10 | 25 | 78 | 16 | 36 |
>TRINITY_DN111759_c0_g1_i7 from sample A2 / Example spliced isoformCACTCGGACAACTTTTTTCATCCACATCGTGTACAAGATGTAATTGTTTCAAGATGTAATAGTTTAGGTATTTAAAAAAAAGATGTAATAGTTTCAATTGAAGTTTAAATACAAGGTAAAGGCATTCCTCTAACTGTAACTCGTGCGTACTGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTT
TTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGAGTTTTGATTCCATTCTAAGTCACGGAAGAAGTGGAATAAGTGGGCCAAACATTATAGCGAACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAG
CCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAAGGTAGAGATTAAAGTTACCTAAAACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTGAGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTA
GACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTTTTCTCTGCTTATTACCTGCTTCAACAACTGCTGCATCCCGCCTAACAACAGGTGGAATGGACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTT
CTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCAGGCTACTTCTAATCGTTCTCCAAAGTCTGGAAATCAAGTTGGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATA
TCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGCTCCACCAGTTCAGGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATT
ACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATCTCTATGTGGAGTCAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGA
ACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTGGTACAAAAAGCTTCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGGCAGCAGCTATGGCTGGTGACAATGCTGCAAGGTCATTACTTGAGA
AACTCACACAACATGCATGCGCTCCATACCTTGGCATCCTAGAAAGGTGGGTGTATGAAGGAGTAATCGATGATCCATACTGGGAATTTTTCATTGCTGAGAATAAGACTTTGCAAAAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACA
AATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCATCATGTTCAGGTTCCCATTGCAGAAAATGCCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCT
TATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTT
GTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTA
GTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTA
TCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATAC
AATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTT
ACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGC
AATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAATAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGA
CTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATGCA
>TRINITY_DN111759_c0_g1_i5 from sample A2 / Example unspliced isoform:CAGATTGGTTCTAATTTTCTAAAGATTGCACTCTCTTCTATTCTTTATAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACAAATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCATCATGTT
CAGGTTCCCATTGCAGAAAATGCCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCTTATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTAT
GGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACA
TATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTG
GAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCAT
AGATGAGgttcaaagcatatgttggattggctctttggatgctattgttgatatatcccatgagttattgtggatatagcccatgatttgtctttcttggttttaagtagcaggatctggattagatatttgaaaataagtttcccaatatttttatgataatgtctttcagGTGATGCAGCACCATGATTATTTTCTTG
ATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGA
ACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTT
GTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGCAATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAAT
AGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGACTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATGCA
Intron 5 GTATATCATT ... TGTGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.31 | 29 | 3 | 10 |
| A2 | 20.75 | 42 | 12 | 10 |
| A3 | 22.22 | 28 | 6 | 10 |
| A4 | 18.52 | 33 | 7 | 8 |
| A5 | 22.89 | 32 | 4 | 15 |
| A6 | 17.53 | 40 | 4 | 13 |
| A7 | 12.85 | 78 | 5 | 18 |
| A8 | 16.36 | 46 | 5 | 13 |
| A9 | 20 | 86 | 18 | 25 |
| A10 | 16.76 | 72 | 15 | 14 |
>TRINITY_DN111759_c0_g1_i7 from sample A2 / Example spliced isoformCACTCGGACAACTTTTTTCATCCACATCGTGTACAAGATGTAATTGTTTCAAGATGTAATAGTTTAGGTATTTAAAAAAAAGATGTAATAGTTTCAATTGAAGTTTAAATACAAGGTAAAGGCATTCCTCTAACTGTAACTCGTGCGTACTGGTGAGAATATAATCCTACAGGTCATTTAATTTGAATGATGTCATTCTT
TTCCTGAAATGTTGGTGCTTGAGATCGCACCGCCCATGGAAGAGTGGAAAGTGCAGCACAACCGCGGCCAAAATTGTCTTCGCAGAAAAGAGTTTTGATTCCATTCTAAGTCACGGAAGAAGTGGAATAAGTGGGCCAAACATTATAGCGAACATATAGATTAATAACCATGCCGCTAAGATTTTAAGACGGAAACCCAG
CCTTGTGAACTGCAAGAACAAACTCGCAAAATGAGCCATGAACGAACGAACGAGCGAGCAAGGAAAAATGGGGATGTATTTCAGTGATTAAGGTAGAGATTAAAGTTACCTAAAACTATCTTTATGTGAAAATCTTGCAACAGTTAAGTGAGCTGTCAAGATTGGGAAAGGCTCATCATGGCCGAGCTAGTGGAATGGTA
GACGATTGGGGTGAGTCCTTTGTGATATTATCACTTAACACAGACAGCGGAGAAATTCAGAGCGACGGAGAAGCCCGAGGGATTGAGATTTTTCTCTGCTTATTACCTGCTTCAACAACTGCTGCATCCCGCCTAACAACAGGTGGAATGGACTATAATTCCTTAAGAAAACTGATGGATGATCAGCAGACGTTCAGCTT
CTCTGAATCAGCTAGCAGTTTCACTAAATTGCTTCAGAATATGAACTTGGATGGTCATCCTCAGGCTACTTCTAATCGTTCTCCAAAGTCTGGAAATCAAGTTGGGGTTTCCAAGCATCTCACAGAAGGTGTTTCCTACCCTACAACTCCCCGGTGGAATATAGAAAGGCCATTTCTTACTGGTCAATTGTGTCTGGATA
TCAAAGCAACCCAACAACGCATAGGAAATAAAGGAAGCTCTATAGATACATTCAATAATGGGAATGTAGACAGAGCCGTTGGATCTTTTGCTCCACCAGTTCAGGAACTCTTTGTCATTGATGATTTACTGTTTACCATGGTTGGTATCGAAGGGAGGTATATATGGATGAAAAGGGGCAGGGCAAAGGAAAGTGGTATT
ACTTTTCAAGTTGATGCATCGATGGACTTGGCATTGCAGGAATTAGCCAAGCGAATATTGCCTTTGTGTGAGAACTATATTATAATTAATCTCTATGTGGAGTCAAGGTCACACTTCAAGCATGGGTTGGTAAATCATGCATTTGCTGCTGCATTGAGAGCAATTTTACAAGATTACCATGCAATGGTGGCACAGCTAGA
ACATCAATTTAGGTTAGGAAGATTGTCCCTGCAAGGACTCTGGTTTTTTTGCCAGCCAATGATGGGTGCAATGCAAGCTCTAACTGTAGTGGTACAAAAAGCTTCTGTGAATAATTTATCGGGGTCTGCAATTTTGAATCTCTTACAGAGCCAGGCAGCAGCTATGGCTGGTGACAATGCTGCAAGGTCATTACTTGAGA
AACTCACACAACATGCATGCGCTCCATACCTTGGCATCCTAGAAAGGTGGGTGTATGAAGGAGTAATCGATGATCCATACTGGGAATTTTTCATTGCTGAGAATAAGACTTTGCAAAAGGAGAGTCTCACTCAAGACTACAATGCTAAATATTGGCAACAACGTTACAGCCTCAAGCCTGGTATTCCAAGTTTTCTTACA
AATGCAGCAGAAGCAATTTTGACAACTGGAAAATATTTGAATGTCTTGCGAGAATGTGGTCATCATGTTCAGGTTCCCATTGCAGAAAATGCCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGCCTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCT
TATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTGTATCAGATTCCTGTCATGAGGACCTTACCTGTT
GTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACCCTCAATTACAAGGTGCAATGGCCATTGTCTCTA
GTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAAAATGCTGCATTTTATGCAAAGTCTGGTGCATTA
TCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGAAATCCATATGTTTACAGTATGCAGCAGCAATAC
AATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTTAAGGCTACCCTTGGAAAATACGAGGAGGAATTT
ACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTTCAGACTTAATAGAAACAGTAGTAATGCAATTGC
AATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAATAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTGGTAAACTCAGTTTCCCTGTGATTATCAACATGA
CTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATGCA
>TRINITY_DN111759_c0_g1_i3 from sample A2 / Example unspliced isoform:GAATGTGGTCATCATGTTCAGGTGTGATCCTGGCAACTCTGATATTTGTTAGGCTTCTAGTACAAAACTCTTTCAGATGAAAACCCTCACTGAAATCCCAGTATAACTTTGAGTATGCGCTTACAGGTTCCCATTGCAGAAAATGCCAAATTAACAAATTCAGATTCTAACCGTCCCTATCTAGAATGCATCAATATAGC
CTACAACTTTGCCAGTGCAGAGCTTTTAAATCTTATCACTCGAAAGTATGATCTTATTGCTAGACTGCGATCTATGAAGCATTACTTTCTCCTTGATCAGGGCGATTTCCTGGTTCACTTTATGGATATAGCTCGAGATGAGCTTGTTAAGAAGCCAGCCACAATATCTGTGGAGAAGTTACAGgtatatcatttcactt
ttgccagtttcattcaattattgcttaggttttgtagggcacacacttccaggactcatacttgaattgtgtctttgttgatgtttttatgctctattgtaatgaatttattagaactgttaagcttcttttattttctcaggtttgtttacatgtgtaacagTCATTACTGGATCTTGCTTTGCGAACCTCTGTTGCTG
TATCAGATTCCTGTCATGAGGACCTTACCTGTTGTGTGGAGAGAACATCATTGCTAGCTCAACTGGATGTCCTTAAAAAAATGGGTAATAACATGTCAGACATATACACTCAAACAGATTCTTTAGAAGGTGACAAATCCAATTCTGAGAATTTCAGTCAATCAGCTCCAGTAAACATTACTGGTTTGGAGACATTCACC
CTCAATTACAAGGTGCAATGGCCATTGTCTCTAGTTCTATCAAGAAAGGCTCTTACTAAATACCAGCTTATTTTCCGCCTTCTTTTCCACTGCAAACATGTGGAACGCCAACTCTGTGGGACATGGCAAACTCATCAGAGTACTCGTAGTCTCAACTTACTGGGAACGGCGATTTCTGGATCTTATGTGCTTTGCCAAAA
AATGCTGCATTTTATGCAAAGTCTGGTGCATTATCTTACATTTGAGGTTCTTGAGCCCAATTGGCATGTTATGTATGAGAGACTACAGAACCCTAAGAGCATAGATGAGGTGATGCAGCACCATGATTATTTTCTTGATAGATGCCTCAAGGAATGCCTTCTTCTTTGGCCAGAAATTTTACAGAAAGTGGAGAAGCTGA
AATCCATATGTTTACAGTATGCAGCAGCAATACAATGGCTGATACCATCAATGTCCGTGGCAGATTCAGTTGTTTCTAGTGTCAATTCTTCAGACACTGTTGTTCTCAAAGAAATATCAAACAAGGGAGCAAACAGAACAAGATCAAGGCACAGAGCCCAGACAATACGAGCATGGAAATCAACAGATGATGCAACATTT
AAGGCTACCCTTGGAAAATACGAGGAGGAATTTACTGAGGAGATGAAGAGTCTAATCATTTTCTTAAGCAGCTGTTCACAGGCTGAGCCATACTTGGCTCACTTAGCCCAAGGGCTACAAGGTCTTGGAAAGGATTTGTAAATTTCCCACCTACGTACTTGAATTATGTTCACGAGTCCTTTATTTCCAAAGTGTTATTT
CAGACTTAATAGAAACAGTAGTAATGCAATTGCAATTTTGTGCCAATGCTTTCTGTGGATATTTATAATGTCTTTTACTGCACATCTACTAAGTTGGACTGTCATACCATTTTCATTTTCTTGTTATAATGTCTAATAGCTAATGAGTTAGGAGGTTCCATTATGTGATGAAAGGGAAATTACCATATTTTTTATAGCTG
GTAAACTCAGTTTCCCTGTGATTATCAACATGACTTGTTTTAAAAAGTACATGTTCAACAAATGGCTTGAGAAAACAACTGGATTTATAAAATATGCA