sp|Q570C0|TIR1_ARATH ----> Protein TRANSPORT INHIBITOR RESPONSE 1
Intron 1 GTCCGATTTG ... CTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.63 | 119.5 | 100 | 2 |
| A2 | 44.25 | 109 | 86 | 6 |
| A3 | 46.16 | 111 | 95 | 3 |
| A4 | 46.92 | 95.5 | 84 | 0 |
| A5 | 47.13 | 62 | 55 | 10 |
| A6 | 47.33 | 212 | 190 | 7 |
| A7 | 44.95 | 309.5 | 252 | 16 |
| A8 | 46.73 | 245.5 | 215 | 8 |
| A9 | 46.23 | 358 | 307 | 8 |
| A10 | 45.2 | 343.5 | 283 | 10 |
>TRINITY_DN44787_c1_g1_i1 from sample A8 / Example spliced isoformGAGGAAACAACCAAATCCTTAGGACCATGAGCCAGCCAAGCCTAAAATTGAGAGGTTGTCCAACAAAGAGACATGTGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGT
TCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAAT
TTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGATATATTAAACTACACGAACATCCTGCAACCAAGATTCTTCTATTGATGGATTCTTTACTGAGTTTGTTTTTCTAGCCTTTAAGGAGC
>TRINITY_DN44787_c1_g1_i5 from sample A8 / Example unspliced isoform:GAGGAAACAACCAAATCCTTAGGACCATGAGCCAGCCAAGCCTAAAATTGAGAGGTTGTCCAACAAAGAGACATGTGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGT
TCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAAT
TTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGgtccgatttgcacgcatttaaatcactaatatctcccggctattttcagATATATTAAACTACACGAACATCCTGCAACCAAGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAG
TATTTCTGTGGTTTCAAGGAGTTCTACATTCATGTGTTAAACA
Intron 2 GTAAATCACT ... CATTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.17 | 27.3 | 41 | 37 |
| A2 | 60 | 18.7 | 29 | 27 |
| A3 | 53.23 | 20.7 | 20 | 27 |
| A4 | 63.96 | 18.3 | 33 | 31 |
| A5 | 75.07 | 6.3 | 26 | 8 |
| A6 | 24.89 | 51.3 | 5 | 29 |
| A7 | 25.38 | 83.3 | 7 | 48 |
| A8 | 29.36 | 100 | 26 | 56 |
| A9 | 26.95 | 107.3 | 19 | 60 |
| A10 | 31.4 | 46 | 11 | 31 |
>TRINITY_DN48486_c0_g1_i3 from sample A10 / Example spliced isoformCAAAGAGACATATGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCACCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCAAGGGGAAGCTCCATTTTGCGGACTTTAACATGGTTC
CTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCC
GCGCACTGCAGGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGTATTTCTGTGGTTTCAAGGAGTTCTACATTCATGTGTTAAACATCATATGTTAGTCAGGGTACAGGGATATACCAAAAGGGTAATCCTTTTTAAGGTTAGACATCCTTCTAGCAACAATCTGTGTTGTATCCCTGAACATGTTTG
TGGCAACTGCACAATATTCATTGTGGTCAAAGATAGCCTTCTGAAGTGTGCACAATAGGCAGCTAATATATTCGAAGAATCTGAAAAAATGCCAGTGGACAGGGAATTGCGATCTAGTAAGAGGCAGAGATTTGAACAGATAGGGACTGTTGATGTTTCTATTGTAAAGTCTGATTTGTCAGAACAGGTTTTTAATTGTA
AATGACAAAAGTTGGGTCCATAGTTAAATATGCTCATGTCAGATGGCGAGACACATAAACATATTGCTAATATGGATTCTGCAAAGGAAAGTGAAAATAATTGCAGGAAAATATCTCCAGAGGCTTCTGAAGACAACATAAAGCAATTAAGTTGTAAGTCAGGTGCAAATGAAAGCGATGCAACTAAGGACGTGATGGAT
GCATCGTCTTTTAAAAGGGAGAGGTACAAGGGAAGTAATGAAGCCTCAAGTGAATTGTTTCCTGAGCAGAATGAGAAGCTTGCCAGTACCCTGCTATCATTAAAGGGAATGGATGGCTCTGCACCCAAAATTGAGTCGTTTCCAAAGGCTCGTCGTGACCAATTACTAGATTCTAATGTTTCGTGGGTAGCTACTAATTG
CTTAGACCCAGAAATATGTAATGAAAAGGCTCTTGATGTTAATGAATTGCATCATATTGAGTTGGAAGTACTAGCCAAATTGAAAAAGAACATAGATGCAAATGGTGGATCTATAGGAGATGGCTGGAAAGTACAAGCTACAAAGGGAAACAAATGTATTTATAAGGTTTACCTTTCTCTAGAGGGGAAAAGATTCAAGT
CAATGAAAGAAGTTCAAAGGTCTCTTGGAATTCTTCCTAATCCTAAGAGGAACTACTGGTAATGAAGAGGACCTAGATAATGCAGAAGCAAAAGTGGACAATGCGAATGCCCCTCAATCTCATCAAGTAAATGGAAATTTAGGCGGCGATCAAATTTCCAAGGGAAGTGCAAGCATGGTGAAAGAATCAAGAAAGTGGCA
TGGACTTTCAACCCCTCTAGTTATACAACATGAACTGAAACAGGCAGAGCTATGCATTTTAAGACAATGTTGAAACTATAACTATGTTGCAAGTGAAGGATTCTTCTATTGATGGATTCTTTACTGAGTTTGTTTTTCTAGCCTTTAAGGAGTTCGAAGCAAAAAGCTATATGTTTGATTTATAAACAACAACAAGCAGC
AGGAACAGAAGGGCTTCTTGCGGGATCACTTGTAGAAAGGAAATGTATCTTAACTGTATTGGGACCAAGATATTTGAACAGAATCTAGGAAATGGATGTGAACATTTTTTATTGTTGGGGATAATTAATATGAGGCACTACTGTAAACTCAGTTACTAATGGACATAGCACTTGCACAAATTTTAGTGCATCTATATAAT
GCAGATTATGTTATCATAATTATATAAAGATGAATGTGTGATGTAATGTTTCTCTCTTGGCAGGAGGTTGCTTACTAGGGCCTGAATTACTGCTGATATGGAATTTGCTTATTTACAGTGTGAACATTGAGTGCAATAAAAGATTTCCTGGGGACCCACTTGTGTTATCAATAACAATTGAAAAAGTGGTTTTTAACTTT
TTAATAAATAATATTCTTCTCATTCTGAGGATGGTACCTAGGGTATATTGTTCAACAACTTTCTGTGAACTTATGATATTTTATTCTTATATCTGTGATTTTGGGTAGCATCCTGCTCCACAAGCTCACCTAGCAAAAAGCCCTCTTGCATCATGATAACTAGAATGTAGGTTTTCAAAGTT
>TRINITY_DN48486_c0_g1_i2 from sample A10 / Example unspliced isoform:CAAAGAGACATATGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCACCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCAAGGGGAAGCTCCATTTTGCGGACTTTAACATGGTTC
CTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCC
GCGCACTGCAGGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGTATTTCTGTGGTTTCAAGGAGTTCTACATTCATGTGTTAAACATCATATGTTAGTCAGGGTACAGGGATATACCAAAAGGGTAATCCTTTTTAAGGTTAGACATCCTTCTAGCAACAATCTGTGTTGTATCCCTGAACATGTTTG
TGGCAACTGCACAATATTCATTGTGGTCAAAGATAGCCTTCTGAAGTGTGCACAATAGGCAGCTAATATATTCGAAGAATCTGAAAAAATGCCAGTGGACAGGGAATTGCGATCTAGTAAGAGGCAGAGATTTGAACAGATAGGGACTGTTGATGTTTCTATTGTAAAGTCTGATTTGTCAGAACAGGTTTTTAATTGTA
AATGACAAAAGTTGGGTCCATAGTTAAATATGCTCATGTCAGATGGCGAGACACATAAACATATTGCTAATATGGATTCTGCAAAGGAAAGTGAAAATAATTGCAGGAAAATATCTCCAGAGGCTTCTGAAGACAACATAAAGCAATTAAGTTGTAAGTCAGGTGCAAATGAAAGCGATGCAACTAAGGACGTGATGGAT
GCATCGTCTTTTAAAAGGGAGAGGTACAAGGGAAGTAATGAAGCCTCAAGTGAATTGTTTCCTGAGCAGAATGAGAAGCTTGCCAGTACCCTGCTATCATTAAAGGGAATGGATGGCTCTGCACCCAAAATTGAGTCGTTTCCAAAGGCTCGTCGTGACCAATTACTAGATTCTAATGTTTCGTGGGTAGCTACTAATTG
CTTAGACCCAGAAATATGTAATGAAAAGGCTCTTGATGTTAATGAATTGCATCATATTGAGTTGGAAGTACTAGCCAAATTGAAAAAGAACATAGATGCAAATGGTGGATCTATAGGAGATGGCTGGAAAGTACAAGCTACAAAGGGAAACAAATGTATTTATAAGGTTTACCTTTCTCTAGAGGGGAAAAGATTCAAGT
CAATGAAAGAAGTTCAAAGGTCTCTTGGAATTCTTCCTAATCCTAAGAGGAACTACTGGTAATGAAGAGGACCTAGATAATGCAGAAGCAAAAGTGGACAATGCGAATGCCCCTCAATCTCATCAAGTAAATGGAAATTTAGGCGGCGATCAAATTTCCAAGGGAAGTGCAAGCATGGTGAAAGAATCAAGAAAGTGGCA
TGGACTTTCAACCCCTCTAGTTATACAACATGAACTGAAACAGGCAGAGCTATGCATTTTAAGACAATGTTGAAACTATAACTATGTTGCAAGTGAAGGTTATTTCATAATCTATATTCAATCAAGTCAAATGTAGTTTTTGCTTTGCAGATATCATCACCTTAGACCTGAATGATTTATAATTATTTTTGAAAATTTGA
ATAATTTAATGCATGTTTCCTTATTGAGAATACAATCTTATGCCGGTCATTTCCTGTCACTAGGATTCTTCTATTGATGGATTCTTTACTGgtaaatcacttaagacttccactgttacaagtaaaaattgctttttaacatagcatagctgagcagaacttcatattcctctataaatattttgcctgatcttaattat
gcttttatgtcatccttttttttggcattttccagAGTTTGTTTTTCTAGCCTTTAAGGAGTTCGAAGCAAAAAGCTATATGTTTGATTTATAAACAACAACAAGCAGCAGGAACAGAAGGGCTTCTTGCGGGATCACTTGTAGAAAGGAAATGTATCTTAACTGTATTGGGACCAAGATATTTGAACAGAATCTAGGAA
ATGGATGTGAACATTTTTTATTGTTGGGGATAATTAATATGAGGCACTACTGTAAACTCAGTTACTAATGGACATAGCACTTGCACAAATTTTAGTGCATCTATATAATGCAGATTATGTTATCATAATTATATAAAGATGAATGTGTGATGTAATGTTTCTCTCTTGGCAGGAGGTTGCTTACTAGGGCCTGAATTACT
GCTGATATGGAATTTGCTTATTTACAGTGTGAACATTGAGTGCAATAAAAGATTTCCTGGGGACCCACTTGTGTTATCAATAACAATTGAAAAAGTGGTTTTTAACTTTTTAATAAATAATATTCTTCTCATTCTGAGGATGGTACCTAGGGTATATTGTTCAACAACTTTCTGTGAACTTATGATATTTTATTCTTATA
TCTGTGATTTTGGGTAGCATCCTGCTCCACAAGCTCACCTAGCAAAAAGCCCTCTTGCATCATGATAACTAGAATGTAGGTTTTCAAAGTT
Intron 3 GTGATGTCTT ... GCCCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.36 | 78 | 44 | 24 |
| A2 | 23.55 | 99 | 39 | 22 |
| A3 | 28.79 | 94 | 52 | 24 |
| A4 | 21.52 | 93 | 36 | 15 |
| A5 | 26.96 | 42 | 19 | 12 |
| A6 | 21.39 | 261 | 97 | 45 |
| A7 | 22.96 | 203 | 69 | 52 |
| A8 | 19.88 | 139 | 33 | 36 |
| A9 | 23.11 | 168 | 52 | 49 |
| A10 | 22.95 | 193 | 76 | 39 |
>TRINITY_DN132672_c1_g1_i2 from sample A1 / Example spliced isoformCTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCCCGAGGATAAAGTCCGTTGCGCTAAAGGGGAAGCTCCATTTTGCGGACTTTAACATGGTGCCTACAGGTTGGGGCGCCGATGTCCACCCATGGCTGGCTGCCATGGCGGAGGCATACCCCTGGTTGGAAGAACTCAGGCTTAAGCGCATG
GTGGTCACCGACGAGAGCCTTGAGCTCCTCGCGCGTTCTTTTCCCAATTTCAAGGTTCTTGTGCTTACCAGTTGCGACGGCTTCAGCACGGACGGGCTCGCTACCATTGCCGCGCACTGCAGGCATATCACAGAGCTAGATTTGCAGGAGAATGACATTGATGATCGTGGTGGCCATTGGCTAAGTAGTTTTCCAGACTC
GTGCACATCGCTTGTTTCCTTAAACTTTGCATGTCTGAATGATGAGGTGAACTTTGAAGCACTCGAGAGATTAGTAGCAAGATGTACTTCCCTCAGGAGTTTGAAATTGAATCGTTTGGTGCCATTAGAGCTACTCCATCGGCTTTTGATTCGTGCCCCACATCTGGAGGATTTGGGTACAGGTGCATACCTGCAAGAGC
CACGCACTGAACAATATTCTAAGCTTAAGGGTGCCTTACAGAATTGCAAGGCACTTCGCAGCTTATCTGGTTTTTGGGAGGTTACACCTGGTTATCTTCCCTCGGTGGACACTGTCTGTGTGAATTTGACCTGTCTGAACTTGAGTTATGCAACAATTCAAAGTGCAGAACTTACTAAGCTCCTTGGTCATTGCCACAAA
CTGCAGCGCTTATGGGTATTGGATTATATTGAAGATAAAGGGCTTGAAGTGGTTGCCTCAACCTGCAAAGATTTGCAGGAACTGCGTGTTTTTCCATTAGACCCTTATGGTCAAGGAGCTGTGACAGAGGAAGGCCTTATGGCTATTTCAAGGGGCTGTCCTAAGCTCAACTCTGTACTATATTTTTGTTGTCAAATGAC
AAATGCAGCTTTGGTTACTGTTGCAAGAAACAGCTCTCTTCTCACTCGTTTCCGCTTATGTATTATTGATCCCAAAAAACCAGATCATGTGACAAAGCAACCCCTAGATGAAGGGTTTGGAGCTATTGTTCAGTATTGTAAAAGTTTACGACGTTTATCTCTTTCTGGCTTGCTTACAGACAAGGTCTTTCAGTTGATTG
GTAATTATGGTAAGTGTTTGGAGATGCTTTCTGTTGCTTTTGCTGGTGATAGTGACTCTGGGATGGAACATGTATTATTAGGCTGCACAAATCTCCGTAAGCTTGAGATAAGGGATAGCCCATTTGGTGATTCGGCTCTTTTAGCAGGTTCGGAAAAGTATGAATCAATGCGATCCCTTTGGATGTCATCCTGTTCTGTT
ACCATGCATGGTTGCAAGAAATTGGCTGCAAAGATGCCTAACTTGAATGTTGAAGTTTTCCATGACAGGGATCAGTTTGAAGATATAAGTTCCATGGATCAGCCCGTAGATAGACTCTATGTGTACCGGTCAGTTGCCGGACATCGTACTGATACACCACATTTCATATGCACTATGTAAGTGGTCATGTCATTTCTTAT
GTACCATGGATGAAGCCGGCATGTTATTGCTAAAACAGCAGAGTTCCAAGCAGGGATGGGATTTTCCTCGTGCACAATGGACGAGGCCAGGAAGTTCTTGTGATGACTGACACTTTCACCTTCCATCACAAAATTTGTATGCCTTGTACAGACAAATTTCAGCATTCAAATACTGTTTGGCATAAAGTTATTACTGTCAC
TCCAGCACTATGCGGCAGTATCCTCTAATGTAGGACTGTTCGATTGATCTTTGGACTCCTTTAATTATGCTGCAAATTATTTAAATGCAGCAAATGAACAGCCTGGCAGACTTCTAGTCTGGAATTAGGCAGTAAATAGTTATTTAATTATATAGGCATACCGTGTGATTTCATTTCATTTTTTAGAGAACCCTTCTGGT
TACCGTTTGTTTAAGACTGCCATGTTCAAAAAATCTTATTTGATTGAAGAGAAGGTAACATTCTCTGCAATATTTGCTTCTTCTTGTGTGCTGACCATCTATAGCCACGCTCCTTAGACAAAGTCCGTTCTCTTGTTTGTTCTCATGTGCTGTGCATTGTTCATATCTTAGAGGTCGTTTATGCAA
>TRINITY_DN132672_c1_g1_i5 from sample A1 / Example unspliced isoform:CTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCCCGAGGATAAAGTCCGTTGCGCTAAAGGGGAAGCTCCATTTTGCGGACTTTAACATGGTGCCTACAGGTTGGGGCGCCGATGTCCACCCATGGCTGGCTGCCATGGCGGAGGCATACCCCTGGTTGGAAGAACTCAGGCTTAAGCGCATG
GTGGTCACCGACGAGAGCCTTGAGCTCCTCGCGCGTTCTTTTCCCAATTTCAAGGTTCTTGTGCTTACCAGTTGCGACGGCTTCAGCACGGACGGGCTCGCTACCATTGCCGCGCACTGCAGGCATATCACAGAGCTAGATTTGCAGGAGAATGACATTGATGATCGTGGTGGCCATTGGCTAAGTAGTTTTCCAGACTC
GTGCACATCGCTTGTTTCCTTAAACTTTGCATGTCTGAATGATGAGGTGAACTTTGAAGCACTCGAGAGATTAGTAGCAAGATGTACTTCCCTCAGGAGTTTGAAATTGAATCGTTTGGTGCCATTAGAGCTACTCCATCGGCTTTTGATTCGTGCCCCACATCTGGAGGATTTGGGTACAGGTGCATACCTGCAAGAGC
CACGCACTGAACAATATTCTAAGCTTAAGGGTGCCTTACAGAATTGCAAGGCACTTCGCAGCTTATCTGGTTTTTGGGAGGTTACACCTGGTTATCTTCCCTCGGTGGACACTGTCTGTGTGAATTTGACCTGTCTGAACTTGAGTTATGCAACAATTCAAAGTGCAGAACTTACTAAGCTCCTTGGTCATTGCCACAAA
CTGCAGCGCTTATGGgtgatgtcttgacttttcaagatttgttgctgaaagattctttttaagttttttgtattttgaattaatgtagtgctgtttgtaatattgcaatatttttgttatgctataaacataaataggagtagtctagctagctaatactctctcatcacttgtcttcccccccacattttcagtcattt
gagttctgaaattatttgtaagatctttagaatgcatttcgaggttcagaacttgtatctcaagttccagctttatcttggctgcacggtagacttatgattgtcagcccttgcagGTATTGGATTATATTGAAGATAAAGGGCTTGAAGTGGTTGCCTCAACCTGCAAAGATTTGCAGGAACTGCGTGTTTTTCCATTA
GACCCTTATGGTCAAGGAGCTGTGACAGAGGAAGGCCTTATGGCTATTTCAAGGGGCTGTCCTAAGCTCAACTCTGTACTATATTTTTGTTGTCAAATGACAAATGCAGCTTTGGTTACTGTTGCAAGAAACAGCTCTCTTCTCACTCGTTTCCGCTTATGTATTATTGATCCCAAAAAACCAGATCATGTGACAAAGCA
ACCCCTAGATGAAGGGTTTGGAGCTATTGTTCAGTATTGTAAAAGTTTACGACGTTTATCTCTTTCTGGCTTGCTTACAGACAAGGTCTTTCAGTTGATTGGTAATTATGGTAAGTGTTTGGAGATGCTTTCTGTTGCTTTTGCTGGTGATAGTGACTCTGGGATGGAACATGTATTATTAGGCTGCACAAATCTCCGTA
AGCTTGAGATAAGGGATAGCCCATTTGGTGATTCGGCTCTTTTAGCAGGTTCGGAAAAGTATGAATCAATGCGATCCCTTTGGATGTCATCCTGTTCTGTTACCATGCATGGTTGCAAGAAATTGGCTGCAAAGATGCCTAACTTGAATGTTGAAGTTTTCCATGACAGGGATCAGTTTGAAGATATAAGTTCCATGGAT
CAGCCCGTAGATAGACTCTATGTGTACCGGTCAGTTGCCGGACATCGTACTGATACACCACATTTCATATGCACTATGTAAGTGGTCATGTCATTTCTTATGTACCATGGATGAAGCCGGCATGTTATTGCTAAAACAGCAGAGTTCCAAGCAGGGATGGGATTTTCCTCGTGCACAATGGACGAGGCCAGGAAGTTCTT
GTGATGACTGACACTTTCACCTTCCATCACAAAATTTGTATGCCTTGTACAGACAAATTTCAGCATTCAAATACTGTTTGGCATAAAGTTATTACTGTCACTCCAGCACTATGCGGCAGTATCCTCTAATGTAGGACTGTTCGATTGATCTTTGGACTCCTTTAATTATGCTGCAAATTATTTAAATGCAGCAAATGAAC
AGCCTGGCAGACTTCTAGTCTGGAATTAGGCAGTAAATAGTTATTTAATTATATAGGCATACCGTGTGATTTCATTTCATTTTTTAGAGAACCCTTCTGGTTACCGTTTGTTTAAGACTGCCATGTTCAAAAAATCTTATTTGATTGAAGAGAAGGTAACATTCTCTGCAATATTTGCTTCTTCTTGTGTGCTGACCATC
TATAGCCACGCTCCTTAGACAAAGTCCGTTCTCTTGTTTGTTCTCATGTGCTGTGCATTGTTCATATCTTAGAGGTCGTTTATGCAA
Intron 4 GTGAGGGGGC ... GAGTGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.65 | 3 | 14 | 11 |
| A2 | 62.79 | 8 | 19 | 8 |
| A3 | 72.73 | 3 | 10 | 6 |
| A4 | 76.92 | 3 | 15 | 5 |
| A5 | 75 | 2 | 1 | 11 |
| A6 | 60.82 | 38 | 58 | 60 |
| A7 | 70.64 | 16 | 39 | 38 |
| A8 | 63.04 | 34 | 57 | 59 |
| A9 | 63.74 | 33 | 65 | 51 |
| A10 | 67.57 | 18 | 36 | 39 |
>TRINITY_DN44787_c1_g1_i9 from sample A8 / Example spliced isoformTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGAATAAAAGATGTGCAAATCTATAAGCAGAAAATGATTTACAGTTGCAAATCACCCGGCAGTATCTATAGTCTGTGTGCCTCAAATTCAACAGGTTT
ATTTGGTATTAGAAGAGTTTGCTACAAAAGCTCTGGGATTCTTTCCAGGAAGTACAACAATACACTTTGAAGACTTTTTTGTCTGTCTCGGGAAAGGATTTTCTTCTGAGAGAGAGAGAGCTTGTCCACTGGACCCTAAAGTTTTCTTCCTTTTTCTCTTTACCTTTTAAAATCCATCCCATCTATTTTTGAGATTTTTA
TGGGGAATGAATTGCTTTCAAGGCAGGGCAGAGGCTGTCTGTTTGGACAGTCTGTCATGAAGTTCCATGTTTCATGACAGAATCTACACCTGAAGGTGTTGTTTTCATGATTCAATGTTTGGGCCACTGCAATTTATCAAGATCAAGAATCTCATATGGTATCTGTACATTATCTGACAAAGGTATACTTTAATGTTCCC
AG
>TRINITY_DN44787_c1_g1_i7 from sample A8 / Example unspliced isoform:GAGGAAACAACCAAATCCTTAGGACCATGAGCCAGCCAAGCCTAAAATTGAGAGGTTGTCCAACAAAGAGACATGTGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGT
TCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAAT
TTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGAATAAAAGATGTGCAAATCTATAAGCAGAAAATGATTTACAGTTGCAAATCACCCGGCAGTATCTATAGgtgagggggcactacagagcagatcttagcctattcctttagtggagcaaggtttct
tcaaccttttatcgcaggatacacaaggaaaatttaacagtgcttaaggatttgatgcaatcattatttgcttttcataaaaagcagaaatctgatatgttcttttgaatcgtgagtgctcagTCTGTGTGCCTCAAATTCAACAGGTTTATTTGGTATTAGAAGAGTTTGCTACAAAAGCTCTGGGATTCTTTCCAGGA
AGTACAACAATACACTTTGAAGACTTTTTTGTCTGTCTCGGGAAAGGATTTTCTTCTGAGAGAGAGAGAGCTTGTCCACTGGACCCTAAAGTTTTCTTCCTTTTTCTCTTTACCTTTTAAAATCCATCCCATCTATTTTTGAGATTTTTATGGGGAATGAATTGCTTTCAAGGCAGGGCAGAGGCTGTCTGTTTGGACAG
TCTGTCATGAAGTTCCATGTTTCATGACAGAATCTACACCTGAAGGTGTTGTTTTCATGATTCAATGTTTGGGCCACTGCAATTTATCAAGATCAAGAATCTCATATGGTATCTGTACATTATCTGACAAAGGTATACTTTAATGTTCCCAG
Intron 5 GTATTGGCCT ... TGGTCTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.45 | 117 | 124 | 3 |
| A2 | 49.3 | 109 | 106 | 8 |
| A3 | 54.7 | 106 | 128 | 10 |
| A4 | 50.54 | 91 | 93 | 4 |
| A5 | 48.44 | 66 | 62 | 1 |
| A6 | 45.23 | 201 | 166 | 8 |
| A7 | 43.18 | 304 | 231 | 7 |
| A8 | 44.78 | 238 | 193 | 0 |
| A9 | 45.07 | 351 | 288 | 1 |
| A10 | 44.39 | 327 | 261 | 2 |
>TRINITY_DN132672_c1_g1_i6 from sample A1 / Example spliced isoformCTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATG
GTGGTCACAGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGATATATTAAACTACACGAACATCCTGCAACCAAGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGT
ATTTCTGTGGTTTCAAGGAGTTCTACAT
>TRINITY_DN132672_c1_g1_i10 from sample A1 / Example unspliced isoform:CTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATG
GTGGTCACAGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGgtattggccttgtctcgccttgctcccttccttgttcatttcttttcaaaaccgtataaattggaagattcgtttctt
ttctagcccgtaaaaattacaagatttgcttagcagcggaaacagaaccctggtctaaagATATATTAAACTACACGAACATCCTGCAACCAAGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGTATTTCTGTGGTTTCAAGGAGTTCTACAT
Intron 6 GTATTGGCCT ... CTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.45 | 117 | 124 | 71 |
| A2 | 49.3 | 109 | 106 | 32 |
| A3 | 54.7 | 106 | 128 | 36 |
| A4 | 50.54 | 91 | 93 | 39 |
| A5 | 48.44 | 66 | 62 | 13 |
| A6 | 45.23 | 201 | 166 | 0 |
| A7 | 43.18 | 304 | 231 | 2 |
| A8 | 44.78 | 238 | 193 | 2 |
| A9 | 45.07 | 351 | 288 | 0 |
| A10 | 44.39 | 327 | 261 | 0 |
>TRINITY_DN132672_c1_g1_i6 from sample A1 / Example spliced isoformCTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATG
GTGGTCACAGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGATATATTAAACTACACGAACATCCTGCAACCAAGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGT
ATTTCTGTGGTTTCAAGGAGTTCTACAT
>TRINITY_DN132672_c1_g1_i7 from sample A1 / Example unspliced isoform:CTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATG
GTGGTCACAGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGgtattggccttgtctcgccttgctcccttccttgttcatttcttttcaaaaccgtataaattggaagattcgtttctt
ttctagcccgtaaaaattacaagatttgcttagcagcggaaacagaaccctggtctaaaggttattttactccgccttttgtttttcttttgaattttgaagcttcagtctgccagattttacatccttggggtttccctctaaagtagctgtcaagcttatacgtatctctttaaaaaaaaacttactaatgatgaagt
tctggattttatttttcatatttaattcctattccttaatctccggtgaaggtccgatttgcacgcatttaaatcactaatatctcccggctattttcagATATATTAAACTACACGAACATCCTGCAACCAAGTAAGTACTCCATGGCTGCTTTAGAAAATAAGAAAGCAAAGATTTTAGCGCCGCTTATCTTTTGATG
TAATGCCATGTCTGAGACCATTAAGTTTATTCTATAAAAGGTTCGCCC
Intron 7 GTTATTTTAC ... CTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 94.59 | 3 | 34 | 71 |
| A2 | 77.14 | 8 | 22 | 32 |
| A3 | 79.59 | 10 | 42 | 36 |
| A4 | 90.24 | 4 | 35 | 39 |
| A5 | 94.87 | 1 | 24 | 13 |
| A6 | 51.52 | 8 | 17 | 0 |
| A7 | 57.58 | 7 | 17 | 2 |
| A8 | 100 | 0 | 7 | 2 |
| A9 | 33.33 | 1 | 1 | 0 |
| A10 | 69.23 | 2 | 9 | 0 |
>TRINITY_DN132672_c1_g1_i10 from sample A1 / Example spliced isoformCTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATG
GTGGTCACAGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGGTATTGGCCTTGTCTCGCCTTGCTCCCTTCCTTGTTCATTTCTTTTCAAAACCGTATAAATTGGAAGATTCGTTTCTT
TTCTAGCCCGTAAAAATTACAAGATTTGCTTAGCAGCGGAAACAGAACCCTGGTCTAAAGATATATTAAACTACACGAACATCCTGCAACCAAGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGTATTTCTGTGGTTTCAAGGAGTTCTACAT
>TRINITY_DN132672_c1_g1_i7 from sample A1 / Example unspliced isoform:CTCAATACATATACCGCGGTACATATATACAGAGATACAGATAGATACCCTCTGGAGATTTTTGGGGGTAATCTGCGATCTCTTTTCGTTTGGGATTTTTTTGTTTGTTTTTAATTTTTGTGGGCTTTGATGCATTTGAAGGTACGTAGGACGTTTTAGTTTTTCCCTGTAGCTCCAAAATCGGCCATGGGGTCTGAAAT
CTAAGCGGTGTATGCGTGAGGTATATTTGTTATTATTAGGATTGCAATTATTATTATGGTGGTGAGAAGGATGAGCTCGTTCCCTGATGAAGTGCTGGAGCATGTATTGGCATTCCTGTCGTCGCACAGGGACAGGAACGCGGTTTCCCTGGTCTGCAAGTCGTGGTTTCGAATCGAGGCGGGCAGCAGGCAGCGGGTTT
TCATCGGAAATTGCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATG
GTGGTCACAGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCCGCGCACTGCAGGTATTGGCCTTGTCTCGCCTTGCTCCCTTCCTTGTTCATTTCTTTTCAAAACCGTATAAATTGGAAGATTCGTTTCTT
TTCTAGCCCGTAAAAATTACAAGATTTGCTTAGCAGCGGAAACAGAACCCTGGTCTAAAGgttattttactccgccttttgtttttcttttgaattttgaagcttcagtctgccagattttacatccttggggtttccctctaaagtagctgtcaagcttatacgtatctctttaaaaaaaaacttactaatgatgaagt
tctggattttatttttcatatttaattcctattccttaatctccggtgaaggtccgatttgcacgcatttaaatcactaatatctcccggctattttcagATATATTAAACTACACGAACATCCTGCAACCAAGTAAGTACTCCATGGCTGCTTTAGAAAATAAGAAAGCAAAGATTTTAGCGCCGCTTATCTTTTGATG
TAATGCCATGTCTGAGACCATTAAGTTTATTCTATAAAAGGTTCGCCC
Intron 8 GTTATTTCAT ... CTGTCACTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.53 | 39 | 98 | 28.3 |
| A2 | 68.93 | 32 | 71 | 16 |
| A3 | 65.69 | 35 | 67 | 12.7 |
| A4 | 68.97 | 18 | 40 | 21.3 |
| A5 | 73.53 | 9 | 25 | 15.7 |
| A6 | 69.89 | 137 | 318 | 19.3 |
| A7 | 65.68 | 267 | 511 | 28.3 |
| A8 | 66.93 | 499 | 1010 | 47 |
| A9 | 68.92 | 299 | 663 | 45.7 |
| A10 | 66.6 | 158 | 315 | 19.7 |
>TRINITY_DN48486_c0_g1_i3 from sample A10 / Example spliced isoformCAAAGAGACATATGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCACCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCAAGGGGAAGCTCCATTTTGCGGACTTTAACATGGTTC
CTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCC
GCGCACTGCAGGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGTATTTCTGTGGTTTCAAGGAGTTCTACATTCATGTGTTAAACATCATATGTTAGTCAGGGTACAGGGATATACCAAAAGGGTAATCCTTTTTAAGGTTAGACATCCTTCTAGCAACAATCTGTGTTGTATCCCTGAACATGTTTG
TGGCAACTGCACAATATTCATTGTGGTCAAAGATAGCCTTCTGAAGTGTGCACAATAGGCAGCTAATATATTCGAAGAATCTGAAAAAATGCCAGTGGACAGGGAATTGCGATCTAGTAAGAGGCAGAGATTTGAACAGATAGGGACTGTTGATGTTTCTATTGTAAAGTCTGATTTGTCAGAACAGGTTTTTAATTGTA
AATGACAAAAGTTGGGTCCATAGTTAAATATGCTCATGTCAGATGGCGAGACACATAAACATATTGCTAATATGGATTCTGCAAAGGAAAGTGAAAATAATTGCAGGAAAATATCTCCAGAGGCTTCTGAAGACAACATAAAGCAATTAAGTTGTAAGTCAGGTGCAAATGAAAGCGATGCAACTAAGGACGTGATGGAT
GCATCGTCTTTTAAAAGGGAGAGGTACAAGGGAAGTAATGAAGCCTCAAGTGAATTGTTTCCTGAGCAGAATGAGAAGCTTGCCAGTACCCTGCTATCATTAAAGGGAATGGATGGCTCTGCACCCAAAATTGAGTCGTTTCCAAAGGCTCGTCGTGACCAATTACTAGATTCTAATGTTTCGTGGGTAGCTACTAATTG
CTTAGACCCAGAAATATGTAATGAAAAGGCTCTTGATGTTAATGAATTGCATCATATTGAGTTGGAAGTACTAGCCAAATTGAAAAAGAACATAGATGCAAATGGTGGATCTATAGGAGATGGCTGGAAAGTACAAGCTACAAAGGGAAACAAATGTATTTATAAGGTTTACCTTTCTCTAGAGGGGAAAAGATTCAAGT
CAATGAAAGAAGTTCAAAGGTCTCTTGGAATTCTTCCTAATCCTAAGAGGAACTACTGGTAATGAAGAGGACCTAGATAATGCAGAAGCAAAAGTGGACAATGCGAATGCCCCTCAATCTCATCAAGTAAATGGAAATTTAGGCGGCGATCAAATTTCCAAGGGAAGTGCAAGCATGGTGAAAGAATCAAGAAAGTGGCA
TGGACTTTCAACCCCTCTAGTTATACAACATGAACTGAAACAGGCAGAGCTATGCATTTTAAGACAATGTTGAAACTATAACTATGTTGCAAGTGAAGGATTCTTCTATTGATGGATTCTTTACTGAGTTTGTTTTTCTAGCCTTTAAGGAGTTCGAAGCAAAAAGCTATATGTTTGATTTATAAACAACAACAAGCAGC
AGGAACAGAAGGGCTTCTTGCGGGATCACTTGTAGAAAGGAAATGTATCTTAACTGTATTGGGACCAAGATATTTGAACAGAATCTAGGAAATGGATGTGAACATTTTTTATTGTTGGGGATAATTAATATGAGGCACTACTGTAAACTCAGTTACTAATGGACATAGCACTTGCACAAATTTTAGTGCATCTATATAAT
GCAGATTATGTTATCATAATTATATAAAGATGAATGTGTGATGTAATGTTTCTCTCTTGGCAGGAGGTTGCTTACTAGGGCCTGAATTACTGCTGATATGGAATTTGCTTATTTACAGTGTGAACATTGAGTGCAATAAAAGATTTCCTGGGGACCCACTTGTGTTATCAATAACAATTGAAAAAGTGGTTTTTAACTTT
TTAATAAATAATATTCTTCTCATTCTGAGGATGGTACCTAGGGTATATTGTTCAACAACTTTCTGTGAACTTATGATATTTTATTCTTATATCTGTGATTTTGGGTAGCATCCTGCTCCACAAGCTCACCTAGCAAAAAGCCCTCTTGCATCATGATAACTAGAATGTAGGTTTTCAAAGTT
>TRINITY_DN48486_c0_g1_i2 from sample A10 / Example unspliced isoform:CAAAGAGACATATGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATCCTCAGCCAAGAAACCCGATCTACGCGGTGAGCACCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCGTTACGCTCAAGGGGAAGCTCCATTTTGCGGACTTTAACATGGTTC
CTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTTACCAGTTGCGACGGCTTAAGCACGGACGGGCTCCCTACCATTTCC
GCGCACTGCAGGTGGGTTAGCTGCACTATTTGATTCTGGTATAATAAATTTAAAGTATTTCTGTGGTTTCAAGGAGTTCTACATTCATGTGTTAAACATCATATGTTAGTCAGGGTACAGGGATATACCAAAAGGGTAATCCTTTTTAAGGTTAGACATCCTTCTAGCAACAATCTGTGTTGTATCCCTGAACATGTTTG
TGGCAACTGCACAATATTCATTGTGGTCAAAGATAGCCTTCTGAAGTGTGCACAATAGGCAGCTAATATATTCGAAGAATCTGAAAAAATGCCAGTGGACAGGGAATTGCGATCTAGTAAGAGGCAGAGATTTGAACAGATAGGGACTGTTGATGTTTCTATTGTAAAGTCTGATTTGTCAGAACAGGTTTTTAATTGTA
AATGACAAAAGTTGGGTCCATAGTTAAATATGCTCATGTCAGATGGCGAGACACATAAACATATTGCTAATATGGATTCTGCAAAGGAAAGTGAAAATAATTGCAGGAAAATATCTCCAGAGGCTTCTGAAGACAACATAAAGCAATTAAGTTGTAAGTCAGGTGCAAATGAAAGCGATGCAACTAAGGACGTGATGGAT
GCATCGTCTTTTAAAAGGGAGAGGTACAAGGGAAGTAATGAAGCCTCAAGTGAATTGTTTCCTGAGCAGAATGAGAAGCTTGCCAGTACCCTGCTATCATTAAAGGGAATGGATGGCTCTGCACCCAAAATTGAGTCGTTTCCAAAGGCTCGTCGTGACCAATTACTAGATTCTAATGTTTCGTGGGTAGCTACTAATTG
CTTAGACCCAGAAATATGTAATGAAAAGGCTCTTGATGTTAATGAATTGCATCATATTGAGTTGGAAGTACTAGCCAAATTGAAAAAGAACATAGATGCAAATGGTGGATCTATAGGAGATGGCTGGAAAGTACAAGCTACAAAGGGAAACAAATGTATTTATAAGGTTTACCTTTCTCTAGAGGGGAAAAGATTCAAGT
CAATGAAAGAAGTTCAAAGGTCTCTTGGAATTCTTCCTAATCCTAAGAGGAACTACTGGTAATGAAGAGGACCTAGATAATGCAGAAGCAAAAGTGGACAATGCGAATGCCCCTCAATCTCATCAAGTAAATGGAAATTTAGGCGGCGATCAAATTTCCAAGGGAAGTGCAAGCATGGTGAAAGAATCAAGAAAGTGGCA
TGGACTTTCAACCCCTCTAGTTATACAACATGAACTGAAACAGGCAGAGCTATGCATTTTAAGACAATGTTGAAACTATAACTATGTTGCAAGTGAAGgttatttcataatctatattcaatcaagtcaaatgtagtttttgctttgcagatatcatcaccttagacctgaatgatttataattatttttgaaaatttga
ataatttaatgcatgtttccttattgagaatacaatcttatgccggtcatttcctgtcactagGATTCTTCTATTGATGGATTCTTTACTGGTAAATCACTTAAGACTTCCACTGTTACAAGTAAAAATTGCTTTTTAACATAGCATAGCTGAGCAGAACTTCATATTCCTCTATAAATATTTTGCCTGATCTTAATTAT
GCTTTTATGTCATCCTTTTTTTTGGCATTTTCCAGAGTTTGTTTTTCTAGCCTTTAAGGAGTTCGAAGCAAAAAGCTATATGTTTGATTTATAAACAACAACAAGCAGCAGGAACAGAAGGGCTTCTTGCGGGATCACTTGTAGAAAGGAAATGTATCTTAACTGTATTGGGACCAAGATATTTGAACAGAATCTAGGAA
ATGGATGTGAACATTTTTTATTGTTGGGGATAATTAATATGAGGCACTACTGTAAACTCAGTTACTAATGGACATAGCACTTGCACAAATTTTAGTGCATCTATATAATGCAGATTATGTTATCATAATTATATAAAGATGAATGTGTGATGTAATGTTTCTCTCTTGGCAGGAGGTTGCTTACTAGGGCCTGAATTACT
GCTGATATGGAATTTGCTTATTTACAGTGTGAACATTGAGTGCAATAAAAGATTTCCTGGGGACCCACTTGTGTTATCAATAACAATTGAAAAAGTGGTTTTTAACTTTTTAATAAATAATATTCTTCTCATTCTGAGGATGGTACCTAGGGTATATTGTTCAACAACTTTCTGTGAACTTATGATATTTTATTCTTATA
TCTGTGATTTTGGGTAGCATCCTGCTCCACAAGCTCACCTAGCAAAAAGCCCTCTTGCATCATGATAACTAGAATGTAGGTTTTCAAAGTT
Intron 9 GTGGGTTAGC ... CATTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.3 | 115 | 190 | 37 |
| A2 | 57.71 | 96 | 131 | 27 |
| A3 | 61.45 | 106 | 169 | 27 |
| A4 | 60.61 | 91 | 140 | 31 |
| A5 | 60 | 60 | 90 | 8 |
| A6 | 48.33 | 248 | 232 | 28 |
| A7 | 55.51 | 311 | 388 | 48 |
| A8 | 52.09 | 287 | 312 | 58 |
| A9 | 54.66 | 394 | 475 | 60 |
| A10 | 62.22 | 323 | 532 | 31 |
>TRINITY_DN112833_c1_g1_i2 from sample A5 / Example spliced isoformTTAGGACCATGAGCCAGCCAAGCCTAAAATTGAGAGGTTGTCCAACAAAGAGACATATGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATTCTCAGCCAAGAAACCCGATCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCG
TTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTT
ACCAGTTGCGACGGCTTAAGCACGGACGGGCTCTCTACCATTTCCGCGCACTGCAGAGTTTGTTTTTCTAGCCTTTAAGGAGTTCGAAGCAAAAAGCTATATGTTTGATTTATAAACAACAACAAGCAGCAGGAACAGAAGGGCTTCTTGCGGGATCACTTGTAGAAAGGAAATGTATCTTAACTGTATTGGGACCAAGA
TATTTGAACAGAATCTAGGAAATGGATGTGAACATTTTTTATTGTTGGGGATAATTAATATGAGGCACTACTGTAAACTCAGTTACTAATGGACATAGCACTTGCACAAATTTTAGTGCATCTATATAATGCAGATTATGTTATCATAATTATATAAAGATGAATGTGTGATGTAATGTTTCTCTCTTGGCAGGAGGTTG
CTTACTAGGGCCTGAATTACTGCTGATATGGAATTTGCTTATTTACAGTGTGAACATTGAGTGCAATAAAAGATTTCCTGGGGACCCACTTGTGTTATCAATAACAATTGAAAAAGTGGTTTTTAACTTTTTAATAAATAATATTCTTCTCATTCTGAGGATGGTACCTAGGGTATATTGTTCAACAACTTTCTGTGAAC
TTATGATATTTTATTCTTATATCTGTGATTTTGGGTAGCATCCTGCTCCACAAGCTCACCTAGCAAAAAGCCCTCTTGCATCATGATAACTAGAATGTAGGTTTTCAAAGTTGTATGCATCTGATAAGCTTATTCATGCTTTATTGACATAAGTCAGTCATAATTTCATCTATCCTAACTCGTATATATCTAATTATATG
CTGCATACTTTATGAATGTACAGTGGCATTGTCCTTCTAATTTGGCTTTTTCTGAATTGCGTCAGAGCTTTGGGGCTCCACAACCATTGCAGTCTCAGCCTGGAGTTTCACCACAGTCAGGGCAGAGATTTATGCCTCCAGCAAGTCGACAGATTCACCCAGAAAATTTTTCCAGTAGACAAGGTACACTACAGACAACC
ATGGGTGTGTCTTCATCAGTTCAACCACAGTTTGCACAGTATACTCCACAAGTTCAGCAATTTCCTCTTCTGCAAGGGCAACAGCCACAGCCTCCTTCACAAGTGATTTCTGTGCCCTTACCTCAGCAGCCTCCACCAGCTTCTTTATCACAAGTGTTTTCTGCACCTTATCCTCAGCAGCCTCTATCAGCACCTTCATC
ACAGTTGCCTTCTGCATCTTATTCTCAGCAGCCTCTATCAGCACCTTCATCACAGTTGCCTTCTGCA
>TRINITY_DN112833_c1_g1_i5 from sample A5 / Example unspliced isoform:TTAGGACCATGAGCCAGCCAAGCCTAAAATTGAGAGGTTGTCCAACAAAGAGACATATGAGGAAGCATATGCCATTATAGGGATTGAATCTATTGCCTCCAAGGATGAAACTCAATTATTCCTAGATTCTCAGCCAAGAAACCCGATCTACGCGGTGAGCCCCCCTATACTCATCAGGAGGTTCTCGAGGATAAAGTCCG
TTACGCTCGAGGGGAAGCCCCATTTTGTGGACTTTAACATGGTTCCTACAGGTTGGGGCGCCGATGTCCACCCCCCGCTGGCTTCCATGGCGGAGGCATACCCCTGGTTGGAAGAAATCAGGCTTAAGCGCATGGTGGTCACCGACGAGAGCTTTGAGCTGCTCGCGCATTCTTTTCCCAATTTCCAGGTTCTTGCGCTT
ACCAGTTGCGACGGCTTAAGCACGGACGGGCTCTCTACCATTTCCGCGCACTGCAGgtgggttagctgcactatttgattctggtataataaatttaaagtatttctgtggtttcaaggagttctacattcatgtgttaaacatcatatgttagtcagggtacagggatataccaaaagggtaatcctttttaaggttag
acatccttctagcaacaatctgtgttgtatccctgaacatgtttgtggcaactgcacaatattcattgtggtcaaagatagccttctgaagtgtgcacaataggcagctaatatattcgaagaatctgaaaaaatgccagtggacagggaattgcgatctagtaagaggcagagatttgaacagatagggactgttgatg
tttctattgtaaagtctgatttgtcagaacaggtttttaattgtaaatgacaaaagttgggtccatagttaaatatgctcatgtcagatggcaagacacataaacatattgctaatatggattctgcaaaggaaagtgaaaataattgcaggaaaatatctccagaggcttctgaagacaacataaagcaattaagttgt
aagtcaggtgcaaatgaaagcgatgcaactaaggacgtgatggatgcatcgtcttttaaaagggagaggtacaagggaagtaatgaagcctcaagtgaattgtttcctgagcagaatgagaagcttgccagtaccctgctatcattaaagggaatggatggctctgcacccaaaattgagtcgtttccaaaggctgatca
tgaccaattactagagcctaatgtttcgggggtagctactaattgcttagacccagaaatatgcaatgaaaaggcttctgatgttaatgaattacatcatattgagctggaattactagccaaattgaaaaagaacatagatgcaaatggtggaactataggagatggctggaaagtacaagctacaaagggaatcaaat
gtatttataaggtttacctttctccagaggggaaaagattcaggtcaatgaaagaagttcaaaggtctcttggaattcttcctaatcctaagaggaactattctgctggtaatgaagaggacctagataatgcagaagcaaaagtggataattcgaatgtgcctcaatctcatcaagtaactggaaatttaggcagcgat
caaatttccaagggaagtgcaagcatggtgaaagaatcaggaaagcggcatggactttcatcccctctagttatacaacatgaactgaaacaggcagagctatgcattttaagacaatgttgaaactataactatgttgcaagtgaaggttatttcataatctatattcaatcaagtcaaatgtagtttttgctttgcag
atatcatcaccttagacctgaatgatttataattatttttgaaaatttgaataatttaatgcatgtttccttattgagaatacaatcttatgccggtcatttcctgtcactaggattcttctattgatggattctttactggtaaatcacttaagacttccactgttacaagtaaaaattgctttttaacatagcatagc
tgagcagaacttcatattcctctataaatattttgcctgatcttaattatgcttttacgtcatccttttttttggcattttccagAGTTTGTTTTTCTAGCCTTTAAGGAGTTCGAAGCAAAAAGCTATATGTTTGATTTATAAACAACAACAAGCAGCAGGAACAGAAGGGCTTCTTGCGGGATCACTTGTAGAAAGGA
AATGTATCTTAACTGTATTGGGACCAAGATATTTGAACAGAATCTAGGAAATGGATGTGAACATTTTTTATTGTTGGGGATAATTAATATGAGGCACTACTGTAAACTCAGTTACTAATGGACATAGCACTTGCACAAATTTTAGTGCATCTATATAATGCAGATTATGTTATCATAATTATATAAAGATGAATGTGTGA
TGTAATGTTTCTCTCTTGGCAGG