sp|Q69XJ0|SPX1_ORYSJ ----> SPX domain-containing protein 1
Intron 1 GTAAATATCG ... CCCTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.56 | 25 | 10 | 12 |
| A2 | 24.38 | 35 | 18.6 | 4 |
| A3 | 21.95 | 19.6 | 7 | 4 |
| A4 | 15.25 | 25 | 6 | 3 |
| A5 | 26.55 | 16 | 8.6 | 3 |
| A6 | 17 | 98 | 28.1 | 12 |
| A7 | 19.57 | 190.6 | 56.7 | 36 |
| A8 | 19.88 | 215 | 66.7 | 40 |
| A9 | 20.3 | 205.6 | 68.7 | 36 |
| A10 | 19.92 | 120 | 42.7 | 17 |
>TRINITY_DN47251_c0_g2_i4 from sample A7 / Example spliced isoformTTTGTTTGGAAATGTAAAGCATATTTGACGAGCAAAGTGACCCATGACAAACATTTTGCCTATCAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACCCGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTAC
AGAGCAAGCTTGCTCCCATAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATATTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTTTGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTAC
TATGGAAATCTTTTAAGCCAACCATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAGTCTCCATCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTCAAGAAACGTTTGAAGTTAATTTTGGCCAAGGATCGAATCGGAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTC
TTTCGCTAAAAGTGACGATTCGAACGGCTGTTCAAGCAGTGGCTCCAATCGAGACGATGATTTTAACGATATCGAAGACATATCCAAACTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAGGGTGAGGAATACCGTCG
ATCCGAGCAGTAACCACGATATGATCAGAGTCTGCCATGATGCTGTCAAATTTCACGGGGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACCGGTTTGGTGAAAATAACAAATAAATACGACAAAAGAACCGGAGGAATCTCGCGTCTGGCGAAAATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATG
GATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCCGAAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGGGGAAGAAGAAGGAAGTGAGGGGGAAGCGGCAGCGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGC
CGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTACACATTTTATGCTAGTATTCTTAATTTTACACACTTGATGCCACTTACTAGGTCAGGTCAAGTCATTTGGACTTCGTCCTACTCTTGTAGTTTCTTTTATGTTTAGCTTTTTTGCATTTT
CACCTTCATATTTGGTGCTCGAACCTGCTATTTTTGATGCGCTAGGTATAACCAAAGTCTAAATGGCATTCATTTCTAATAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATTAACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGATTATAGAGCATG
TGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCAGGTAAAGAGGAGGAGAAATTTCAC
>TRINITY_DN47251_c0_g2_i6 from sample A7 / Example unspliced isoform:TTTGTTTGGAAATGTAAAGCATATTTGACGAGCAAAGTGACCCATGACAAACATTTTGCCTATCAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACCCGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTAC
AGAGCAAGCTTGCTCCCATAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATATTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTTTGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTAC
TATGGAAATCTTTTAAGCCAACCATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAGTCTCCATCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTCAAGAAACGTTTGAAGTTAATTTTGGCCAAGGATCGAATCGGAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTC
TTTCGCTAAAAGTGACGATTCGAACGGCTGTTCAAGCAGTGGCTCCAATCGAGACGATGATTTTAACGATATCGAAGACATATCCAAACTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAGGGTGAGGAATACCGTCG
ATCCGAGCAGTAACCACGATATGATCAGAGTCTGCCATGATGCTGTCAAATTTCACGGGGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACCGgtaaatatcgaaaaccttgttttaatcttgttttctacttggaaagccaaattgatacttcctgttacccttacccttatcagGTTTGGTGAAAATAA
CAAATAAATACGACAAAAGAACCGGAGGAATCTCGCGTCTGGCGAAAATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCCGAAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAG
GATGAAACTGGGGAAGAAGAAGGAAGTGAGGGGGAAGCGGCAGCGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTACACATTTTATGCTAGTATTCTTAATTTTACACACTTG
ATGCCACTTACTAGGTCAGGTCAAGTCATTTGGACTTCGTCCTACTCTTGTAGTTTCTTTTATGTTTAGCTTTTTTGCATTTTCACCTTCATATTTGGTGCTCGAACCTGCTATTTTTGATGCGCTAGGTATAACCAAAGTCTAAATGGCATTCATTTCTAATAGTTGTATGGCTTACATTCTACCTCCAACTTTACAAT
AAATATGGAATTAACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGATTATAGAGCATGTGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCAGGTAAAGAGGAGGAGAAATTTCAC
Intron 2 GTAACTTTTT ... TTATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.72 | 14 | 15 | 0 |
| A2 | 71.88 | 9 | 23 | 1 |
| A3 | 67.74 | 10 | 21 | 0 |
| A4 | 100 | 0 | 4 | 0 |
| A5 | 33.33 | 2 | 1 | 1 |
| A6 | 60.33 | 48 | 73 | 0 |
| A7 | 61.67 | 70 | 112.6 | 1.2 |
| A8 | 61.75 | 84 | 135.6 | 4.2 |
| A9 | 59.84 | 51 | 76 | 1.2 |
| A10 | 59.09 | 54 | 78 | 3 |
>TRINITY_DN47251_c0_g2_i1 from sample A7 / Example spliced isoformTTTGTTTGGAAATGTAAAGCATATTTGACGAGCAAAGTGACCCATGACAAACATTTTGCCTATCAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACCCGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTAC
AGAGCAAGCTTGCTCCCATAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATATTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTTTGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTAC
TATGGAAATCTTTTAAGCCAACCATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAGTCTCCATCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTCAAGAAACGTTTGAAGTTAATTTTGGCCAAGGATCGAATCGGAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTC
TTTCGCTAAAAGTGACGATTCGAACGGCTGTTCAAGCAGTGGCTCCAATCGAGACGATGATTTTAACGATATCGAAGACATATCCAAACTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAGGGTGAGGAATACCGTCG
ATCCGAGCAGTAACCACGATATGATCAGAGTCTGCCATGATGCTGTCAAATTTCACGGGGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACCGGTTTGGTGAAAATAACAAATAAATACGACAAAAGAACCGGAGGAATCTCGCGTCTGGCGAAAATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATG
GATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCCGAAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGGGGAAGAAGAAGGAAGTGAGGGGGAAGCGGCAGCGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGC
CGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCAAGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGTTTTCCATATACTTTTGTTGGATTTCCTTTCTTGAATGAAAGGACGCAAGTTGCAAGGGTTGTTTTT
TAAATTTTTAAGATGAACTTCTCGCTTGG
>TRINITY_DN47251_c0_g2_i4 from sample A7 / Example unspliced isoform:TTTGTTTGGAAATGTAAAGCATATTTGACGAGCAAAGTGACCCATGACAAACATTTTGCCTATCAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACCCGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTAC
AGAGCAAGCTTGCTCCCATAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATATTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTTTGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTAC
TATGGAAATCTTTTAAGCCAACCATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAGTCTCCATCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTCAAGAAACGTTTGAAGTTAATTTTGGCCAAGGATCGAATCGGAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTC
TTTCGCTAAAAGTGACGATTCGAACGGCTGTTCAAGCAGTGGCTCCAATCGAGACGATGATTTTAACGATATCGAAGACATATCCAAACTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAGGGTGAGGAATACCGTCG
ATCCGAGCAGTAACCACGATATGATCAGAGTCTGCCATGATGCTGTCAAATTTCACGGGGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACCGGTTTGGTGAAAATAACAAATAAATACGACAAAAGAACCGGAGGAATCTCGCGTCTGGCGAAAATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATG
GATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCCGAAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGGGGAAGAAGAAGGAAGTGAGGGGGAAGCGGCAGCGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGC
CGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCAAgtaacttttttttaagatttttaattgtacacattttatgctagtattcttaattttacacacttgatgccacttactaggtcaggtcaagtcatttggacttcgtcctactcttgtagtttcttttatgtttagcttttttgcatttt
caccttcatatttggtgctcgaacctgctatttttgatgcgctaggtataaccaaagtctaaatggcattcatttctaatagttgtatggcttacattctacctccaactttacaataaatatggaattaactatttcaaacttttccttttacactaaaatatcattttctctctagtcggtggagattatagagcatg
tggatgttataactacgttgctaaaagttgttgcatgtatgctgttatgcttagtgatttcattttatatgcagGTAAAGAGGAGGAGAAATTTCAC
Intron 3 GTAAGTTCAT ... GTAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 3 | 7 | 8 |
| A2 | 68.63 | 8 | 4 | 31 |
| A3 | 76.27 | 7 | 18 | 27 |
| A4 | 53.85 | 21 | 15 | 34 |
| A5 | 73.33 | 4 | 6 | 16 |
| A6 | 61.11 | 21 | 21 | 45 |
| A7 | 68.15 | 25 | 21 | 86 |
| A8 | 60 | 30 | 23 | 67 |
| A9 | 65.14 | 38 | 44 | 98 |
| A10 | 61.73 | 31 | 24 | 76 |
>TRINITY_DN44476_c0_g1_i1 from sample A6 / Example spliced isoformCGGGTGGAAGAATATCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCG
CTCTGCCCGTCGCAATCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGGTAATGATGAATTTCTGATCTTTTTTTAATTGCTGAAACTTCGGGGATATCAGAGGTGTTTCTCCATTTTTGCGGAAAT
GATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCA
GGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAA
TCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGA
ATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAGAGCAGCCATTTTTTACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAA
ACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCC
CAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCGCTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGTTTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAG
GTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATTAACTATTTCAAACTTTTCCTTTTAACCTAAAATATCATTTTTTCTCTACTCGGTGGAGATTATAGAGCAAGTGGATGTTATAACTACGTTGCGAAAAGTTGTTGCATGTATGCTGTTATGTT
TCGTGATTTCATTTTATATGTAGGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGTTTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATA
TATTCTGTTGTTTATCTTTGGGTGGTTGGGGTTTTCATTGTTAGAAATCTAATTTTTTGGGATTATGATTTCATTTATATTGTAAATAATGTACATATGTAAAAAGTTGCAATAAGTGAAATATAAGGATTTTTGGAGACTTCTATGAATCTCTTGGAATCTGAAGTCCAAGAGACA
>TRINITY_DN44476_c0_g1_i3 from sample A6 / Example unspliced isoform:CGGGTGGAAGAATATCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCG
CTCTGCCCGTCGCAATCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGGTAATGATGAATTTCTGATCTTTTTTTAATTGCTGAAACTTCGGGGATATCAGAGGTGTTTCTgtaagttcatcagatt
ataaatgcagttatattttttaatctgcctcagatcatatatgtagttatactcgtacaattctcttttgaagggcctagggttttcgatttttggtaaatgcagCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAA
CCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTT
CTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAG
AGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAA
GGTTTTAGAGCAGCCATTTTTTACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGC
AGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCGC
TTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGTTTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAGGTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATTA
ACTATTTCAAACTTTTCCTTTTAACCTAAAATATCATTTTTTCTCTACTCGGTGGAGATTATAGAGCAAGTGGATGTTATAACTACGTTGCGAAAAGTTGTTGCATGTATGCTGTTATGTTTCGTGATTTCATTTTATATGTAGGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTT
ATAAAAACATGATATTTGGAACTATGTTTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTATCTTTGGGTGGTTGGGGTTTTCATTGTTAGAAATCTAATTTTTTGGGATTATGATTTCATTTATA
TTGTAAATAATGTACATATGTAAAAAGTTGCAATAAGTGAAATATAAGGATTTTTGGAGACTTCTATGAATCTCTTGGAATCTGAAGTCCAAGAGACA
Intron 4 GTAATGATGA ... TCTTTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.49 | 38 | 25 | 1 |
| A2 | 24.37 | 45 | 10 | 19 |
| A3 | 22.69 | 46 | 9 | 18 |
| A4 | 23.91 | 35 | 14 | 8 |
| A5 | 26.83 | 15 | 7 | 4 |
| A6 | 24.02 | 68 | 25 | 18 |
| A7 | 24.63 | 153 | 53 | 47 |
| A8 | 21.74 | 90 | 21 | 29 |
| A9 | 25.18 | 156 | 54 | 51 |
| A10 | 20.53 | 120 | 32 | 30 |
>TRINITY_DN47815_c0_g2_i4 from sample A10 / Example spliced isoformCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCCGTCGCAA
TCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAAC
GATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGG
AATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAG
GAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAAC
CGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAG
GAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATG
CTAGTATTTTTAATTTTACACACTTGATGCCGCTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGTTTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAGGTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACAT
TCTACCTCCAACTTTACAATAAATATGGAATTAACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGATTATAGAGCATGTGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCATGTTATGCTTAGTGATTTCATTTT
ATATGCAGGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGTTTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTAT
CTTTGGGTGGTTGGG
>TRINITY_DN47815_c0_g2_i3 from sample A10 / Example unspliced isoform:CAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCCGTCGCAA
TCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGgtaatgatgaatttctgatctttttttaattgctgaaacttcggggatatcagaggtgtttctgtaagttcatcagattatagatgcagttata
tttttgaatctggctcagattatatatgtagttatattcttctttggaagggcctagggttttggatttttggtaaatgaggccatttttgcggaaatgatcggaaaaacaaaattttctactatggaaatcttttaagccaaccaatgcagttatattttttaatctgcctcagatcatatatgtagttatactcgtac
aattctcttttgaagGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTT
AAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGA
TGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAG
TCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGC
GAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAA
AGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCGCTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGT
TTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAGGTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATTAACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGA
TTATAGAGCATGTGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCATGTTATGCTTAGTGATTTCATTTTATATGCAGGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGT
TTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTATCTTTGGGTGGTTGGG
Intron 5 GTACTCTCAG ... TTGCGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.47 | 25 | 0 | 9 |
| A2 | 21.15 | 41 | 0 | 11 |
| A3 | 13.79 | 25 | 0 | 4 |
| A4 | 21.74 | 18 | 0 | 5 |
| A5 | 42.86 | 12 | 3 | 9 |
| A6 | 17.21 | 101 | 0 | 21 |
| A7 | 21.37 | 103 | 2 | 28 |
| A8 | 24.32 | 112 | 2 | 36 |
| A9 | 18.44 | 146 | 0 | 33 |
| A10 | 20.33 | 98 | 1 | 25 |
>TRINITY_DN47815_c0_g2_i3 from sample A10 / Example spliced isoformCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCCGTCGCAA
TCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGGTAATGATGAATTTCTGATCTTTTTTTAATTGCTGAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATA
TTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTTTGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTACTATGGAAATCTTTTAAGCCAACCAATGCAGTTATATTTTTTAATCTGCCTCAGATCATATATGTAGTTATACTCGTAC
AATTCTCTTTTGAAGGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTT
AAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGA
TGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAG
TCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGC
GAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAA
AGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCGCTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGT
TTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAGGTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATTAACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGA
TTATAGAGCATGTGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCATGTTATGCTTAGTGATTTCATTTTATATGCAGGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGT
TTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTATCTTTGGGTGGTTGGG
>TRINITY_DN47815_c0_g2_i7 from sample A10 / Example unspliced isoform:GGAATACATCGTCCGTCAAAAGgtactctcagttactttacaaaattttccaccgcatcatgatcccgcgctgctcaaacggttttttgcgatcagGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAAT
GGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTC
Intron 6 GTAATGATGA ... TCTTTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.28 | 38 | 25 | 8 |
| A2 | 26.83 | 45 | 10 | 23 |
| A3 | 27.3 | 46 | 8.6 | 26 |
| A4 | 30.06 | 35 | 13.1 | 17 |
| A5 | 36.17 | 15 | 7 | 10 |
| A6 | 28.25 | 68 | 24.6 | 29 |
| A7 | 26.95 | 153 | 51.9 | 61 |
| A8 | 26.23 | 90 | 21 | 43 |
| A9 | 29.02 | 156 | 53.6 | 74 |
| A10 | 25.72 | 120 | 31.1 | 52 |
>TRINITY_DN116149_c0_g1_i1 from sample A3 / Example spliced isoformCAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACCCGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAG
ACCCATTTCAGAGGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAA
GAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATG
ATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTC
TGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTAAATATCGAAAACCTCGTTTTAATCTTGTTTTCTA
>TRINITY_DN116149_c0_g1_i4 from sample A3 / Example unspliced isoform:CAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACCCGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAG
ACCCATTTCAGAGgtaatgatgaatttctgatctttttttaattgctgaaacttcggggatatcagaggtgtttctgtaagttcatcagattataaatgcagttatattttttaatctgcctcagatcatatatgtagttatactcgtacaattctcttttgaagGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGCCA
TTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGA
AGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCA
TCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAAT
TACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAAAGCAGCCATTTTTTACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGG
AACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAGTTATCCAGAAGAATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATA
TGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCGCTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGTTTAGCTTATTTGCATTTTCA
Intron 7 GTAATGATGA ... GTAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.67 | 23 | 25 | 4 |
| A2 | 49.33 | 19 | 10 | 27 |
| A3 | 64.71 | 9 | 9 | 24 |
| A4 | 39.05 | 32 | 14 | 27 |
| A5 | 45.95 | 10 | 7 | 10 |
| A6 | 47.69 | 34 | 25 | 37 |
| A7 | 46.29 | 76 | 53 | 78 |
| A8 | 49.68 | 39 | 21 | 56 |
| A9 | 47.86 | 73 | 54 | 80 |
| A10 | 35.77 | 79 | 32 | 56 |
>TRINITY_DN47815_c0_g2_i8 from sample A10 / Example spliced isoformCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCCGTCGCAA
TCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGA
ACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGT
TCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGA
GAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGA
AGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGG
CAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCG
CTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGTTTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAGGTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATT
AACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGATTATAGAGCATGTGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCATGTTATGCTTAGTGATTTCATTTTATATGCAGGTAAAGAGGAGGAGAAATTTCACC
ATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGTTTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTATCTTTGGGTGGTTGGG
>TRINITY_DN47815_c0_g2_i3 from sample A10 / Example unspliced isoform:CAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCCGTCGCAA
TCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGgtaatgatgaatttctgatctttttttaattgctgaaacttcggggatatcagaggtgtttctgtaagttcatcagattatagatgcagttata
tttttgaatctggctcagattatatatgtagttatattcttctttggaagggcctagggttttggatttttggtaaatgaggccatttttgcggaaatgatcggaaaaacaaaattttctactatggaaatcttttaagccaaccaatgcagttatattttttaatctgcctcagatcatatatgtagttatactcgtac
aattctcttttgaagggcctagggttttcgatttttggtaaatgcagCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTT
AAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGA
TGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAG
TCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGC
GAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAA
AGGCAGCTCTACTTACAGCCCCTTTTCTCTGCCTCCACTGCATCACGATATGCCCCCGAGCCCCAGCAAGTAACTTTTTTTTAAGATTTTTAATTGTAAACATTTTATGCTAGTATTTTTAATTTTACACACTTGATGCCGCTTACTAGGTCAGGTCAAGTCGTTTGGACTTCCTTCTACTCTTGCAGAATCCTTTGTGT
TTAGCTTATTTGCATTTTCACCTTCATATTTGGTGCTCGGACCTGCTATTTTTGATACGCTAGGTATAACCAAAGTCTAAATGACATTCATTAGTTGTATGGCTTACATTCTACCTCCAACTTTACAATAAATATGGAATTAACTATTTCAAACTTTTCCTTTTACACTAAAATATCATTTTCTCTCTAGTCGGTGGAGA
TTATAGAGCATGTGGATGTTATAACTACGTTGCTAAAAGTTGTTGCATGTATGCTGTTATGCTTAGTGATTTCATTTTATATGCATGTTATGCTTAGTGATTTCATTTTATATGCAGGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGT
TTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTATCTTTGGGTGGTTGGG
Intron 8 GTAATGATGA ... GTAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.77 | 23 | 25 | 8 |
| A2 | 51.9 | 19 | 10 | 31 |
| A3 | 66.67 | 9 | 9 | 27 |
| A4 | 42.86 | 32 | 14 | 34 |
| A5 | 53.49 | 10 | 7 | 16 |
| A6 | 50.72 | 34 | 25 | 45 |
| A7 | 47.77 | 76 | 53 | 86 |
| A8 | 53.01 | 39 | 21 | 67 |
| A9 | 51.01 | 73 | 54 | 98 |
| A10 | 40.6 | 79 | 32 | 76 |
>TRINITY_DN100589_c0_g1_i3 from sample A4 / Example spliced isoformAGAATATCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCC
GTCGCAATCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATT
CTCAAGAACCAGATCAAAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGA
TTCTTGTTCTTTCGCTAAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAAT
TGCAGGAGAGAATTGAAAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTC
ATTCAGAAGGTTTTAGAGCAGCCATTTTTTACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTA
TTTGGGGCAGGACGAGTTATCCAGAAG
>TRINITY_DN100589_c0_g1_i1 from sample A4 / Example unspliced isoform:AGAATATCAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCC
GTCGCAATCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGgtaatgatgaatttctgatctttttttaattgctgaaacttcggggatatcagaggtgtttctgtaagttcatcagattataaatgc
agttatattttttaatctgcctcagatcatatatgtagttatactcgtacaattctcttttgaagggcctagggttttcgatttttggtaaatgcagCCATTTTTGCGGAAATGATCGAAAAAACAAAATTTTCTACAACGGAAATCTTTTAAGCCAACGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCA
AAGAATCTCCACCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTTAAGAAACGTTTGAAGTTAAATTTTCCTTCAGAAGTAGGAGAGGAAGCCGAAGACGCGACGTCAGGAGTAGTTCTTCAGAGGCCAAGGATCGAATCGCAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCT
AAAAGTGATGATTCAAACGACTGTTCAAGCAGTGGCTCCAATCCAGACGATGATTTTAACGATATCGAAGACATATCGTCAAGGACTGAGTTCGATTTCATCGAGCTGCTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGA
AAAGGTGAGGAATACCGTCGATCCCATCAGTAAGCACGATATGATCAAAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACTGGTTTGGTGAAAATAACAAAGAAATACGACAAAAGAACCGGCGGAATCTCGCGTCTGGTGTTCATTCAGAAGGTTTTAG
AGCAGCCATTTTTTACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCTGGAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGAGCAGGAAGAAGGAAGCGAGGGGGAAGCGGCAGAGTATTTGGGGCAGGACGAG
TTATCCAGAAG
Intron 9 GTAACTTTTT ... TTATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.72 | 14 | 15 | 0 |
| A2 | 71.88 | 9 | 23 | 0 |
| A3 | 67.74 | 10 | 21 | 0 |
| A4 | 100 | 0 | 4 | 4 |
| A5 | 33.33 | 2 | 1 | 0 |
| A6 | 60.33 | 48 | 73 | 1 |
| A7 | 61.75 | 70 | 113 | 3 |
| A8 | 61.82 | 84 | 136 | 2 |
| A9 | 59.84 | 51 | 76 | 1 |
| A10 | 59.09 | 54 | 78 | 3 |
>TRINITY_DN47815_c0_g2_i5 from sample A10 / Example spliced isoformGGAATTTGGAAAATTTTCTATTAATCATTTTTATGGTTTCCAGATGTTTTCACGGTTTCTTTTGTTTGGAAATGTAAAGCATATTTGACGAGCAAAGTGACCCATGACAAACATTTTGCCTATCAAATTCAAACCATGCAGGAATCCACAACCCAAATTTATCAAATTCTAACTGCAGGGATCCACTACCGAAATTTACC
CGCAATTCCTGTTCGCTCTGCCCGTCGCGATCTGAAGACGGTGGATGAGGATTAATTTACAGAGCAAGCTTGCTCCCATAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATATTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTT
TGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTACTATGGAAATCTTTTAAGCCAACCAATGCAGTTATATTTTTTAATCTGCCTCAGATCATATATGTAGTTATACTCGTACAATTCTCTTTTGAAGGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGATCAAAATGAAATTC
TGGAAAATTCTCAAGAACCAGATCAAAGAGTCTCCATCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTCAAGAAACGTTTGAAGTTAATTTTGGCCAAGGATCGAATCGGAGGGATCGCCGGAATCTGTAGCGGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGACGATTCGAACGGCTGTTCAAGCA
GTGGCTCCAATCGAGACGATGATTTTAACGATATCGAAGACATATCCAAACTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAATTGAAAGGGTGAGGAATACCGTCGATCCGAGCAGTAACCACGATATGATCAGAGTCTGCCAT
GATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACCGGTTTGGTGAAAATAACAAATAAATACGACAAAAGAACCGGAGGAATCTCGCGTCTGGCGAAAATTCAGAAGGTTTTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAAC
TCTTCATAACCTAATTTCTTCTTCCGAAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGGGGAAGAAGAAGGAAGTGAGGGGGAAGCGGCAGCGTATTTGGGGCAGGACGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCT
CTACTTACAGCAAGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAACTATGTTTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTG
TTTATCTTTGGGTGGTTGGG
>TRINITY_DN47815_c0_g2_i1 from sample A10 / Example unspliced isoform:CAAGTCGGTGGAGTAATGAAAATTAGTGATGTACGTCTAGGTGCAACATTTCAACCTGCAAGGAAGATTCAGGAGAATATGCGTTTAAAACATTAGCATATGGAATATGCGTAAAGCATCCAAGAGTATTGACCCGCGATTCCTGCTCGCACCTTCCCAGAATATTGACCCGCAATTCTTGTTCGCTCTGCCCGTCGCAA
TCTGAATACGGTGGATGAGGATTAATTTACAGAGCGAGCTTCCTCCCATGTAATCTTTGTTTGGTAAATGGATGGAATTGCATTTGTGATTAGACCCATTTCAGAGGTAATGATGAATTTCTGATCTTTTTTTAATTGCTGAAACTTCGGGGATATCAGAGGTGTTTCTGTAAGTTCATCAGATTATAGATGCAGTTATA
TTTTTGAATCTGGCTCAGATTATATATGTAGTTATATTCTTCTTTGGAAGGGCCTAGGGTTTTGGATTTTTGGTAAATGAGGCCATTTTTGCGGAAATGATCGGAAAAACAAAATTTTCTACTATGGAAATCTTTTAAGCCAACCAATGCAGTTATATTTTTTAATCTGCCTCAGATCATATATGTAGTTATACTCGTAC
AATTCTCTTTTGAAGGGCCTAGGGTTTTCGATTTTTGGTAAATGCAGATCAAAATGAAATTCTGGAAAATTCTCAAGAACCAGATCAAAGAGTCTCCATCTGGATGGCAAGATCAATTTCTGTCGTACAAAGAACTCAAGAAACGTTTGAAGTTAATTTTGGCCAAGGATCGAATCGGAGGGATCGCCGGAATCTGTAGC
GGAAAGAAGAAACGATTCTTGTTCTTTCGCTAAAAGTGACGATTCGAACGGCTGTTCAAGCAGTGGCTCCAATCGAGACGATGATTTTAACGATATCGAAGACATATCCAAACTAAATCCGGAGCTTGTGAAGTTTAACGCATTCTTCGGGGCTAAGCAAGAGGAATACATCGTCCGTCAAAAGGAATTGCAGGAGAGAA
TTGAAAGGGTGAGGAATACCGTCGATCCGAGCAGTAACCACGATATGATCAGAGTCTGCCATGATGCTGTCAAATTTCACGGCGAAATGGTTCTCTTGGAGAATTACAGCATTTTGAATTTCACCGGTTTGGTGAAAATAACAAATAAATACGACAAAAGAACCGGAGGAATCTCGCGTCTGGCGAAAATTCAGAAGGTT
TTAGAGCAGCCATTTTTCACCATGGATCTTCTGTTCAAGCTCGTCAAGCAATGCGAGGAAACTCTTCATAACCTAATTTCTTCTTCCGAAGAGGAGGACGAAGGAACAGATGAGGAAACGGAGGAGGAAGAAGGAACAGAGGATGAAACTGGGGAAGAAGAAGGAAGTGAGGGGGAAGCGGCAGCGTATTTGGGGCAGGA
CGAGTTATCCAGAAGCATCATGGCCGCTCTTCACAGCACGCAAGAAATGCGCAAAGGCAGCTCTACTTACAGCAAgtaacttttttttaagatttttaattgtacacattttatgctagtattcttaattttacacacttgatgccacttactaggtcaggtcaagtcatttggacttcgtcctactcttgtagtttctt
ttatgtttagcttttttgcattttcaccttcatatttggtgctcggacctgctatttttgatacgctaggtataaccaaagtctaaatgacattcattagttgtatggcttacattctacctccaactttacaataaatatggaattaactatttcaaacttttccttttacactaaaatatcattttctctctagtcgg
tggagattatagagcatgtggatgttataactacgttgctaaaagttgttgcatgtatgctgttatgcttagtgatttcattttatatgcatgttatgcttagtgatttcattttatatgcagGTAAAGAGGAGGAGAAATTTCACCATGTCTAATTACACAATCAGAATCCTTTATTTATAAAAACATGATATTTGGAA
CTATGTTTTCTATATACTTTTGATGGATTTCCTTTCTTCAATGAAAGGGTTGTTTTTTCAATTTTTAAGAGGAACTTCTAGCTTGATGATTAAATCTATATATTCTGTTGTTTATCTTTGGGTGGTTGGG