NA ----> NA
Intron 1 GTGAATACCC ... GTTGACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.37 | 5 | 5 | 4 |
| A2 | 20 | 8 | 3 | 1 |
| A3 | 0 | 8 | 0 | 0 |
| A4 | 25 | 3 | 0 | 2 |
| A5 | 41.18 | 10 | 7 | 7 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 9.09 | 10 | 0 | 2 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 23.81 | 8 | 0 | 5 |
| A10 | 23.08 | 5 | 3 | 0 |
>TRINITY_DN85018_c0_g1_i1 from sample A5 / Example spliced isoformGATGCGACTCGGGTCGAAATCACAGTTCCGTTCATGGTTCACCCGCATCATTATTTCACCATGCTCCGACTCCGAGTCGAGTCGGAACATAAAAAAAAGAAAAAGAATCGCGCTGGATCGATCAAGAGCATAATATATTTTTGTTGCTGGATTCTGGCAAGGCTGTTTTCTTTTATGTTTGCTGGGTTCCGGCGAGGGTT
GCCAAGCAGGGGGTGTTTTTCCAACAAAGCGTTTCAGGGCTGGATTCGGAGCAGATACTTTTTTTCATTCCCACACCATTTCGACTTGTTTCTGGTGAATGGACATTTTATTAGGGCATCATAGGAAATGGATTTCCACAGGCTCAACGAAGGATTTATAGGGTTACTGCTGCTTTCTTCTCTTCTGCTATTCCCAGCAT
CACCGGACGCTAAAGAAATCATAAGCTCGGTATCCGAAGACAATTCACGGGATGGAAGTAGTACCCAATTCAGAAATCAGAAGAGAATAATCGATCAGAGAATTGTCGATGGTTCCAGCCCATCACCGTCAATAACAACAGTTTTACATTCAGATCAATGTTCGTCCATTCTTTCAGATTCACATATTTCTAATTCGCCT
CCTCTTGAACACTTAGGAAAGAAGAGTGACAAAACCAAGGCAGTTGTTACAGCTGTCATTATTACTGCAATATCAACTCTTGCGCTCGCGGGGATGTTTTCTAACTTGTATCAAAAGTTTGCCACTGGTCGACATGGATCGAATGAGCAAAAGGATGATAGGCCTCTTATATTTTCAAGCGTAGAAAGGGTGTCAGTTAG
TCATTCTTATGGTGAATCAAATGTGTTAAATTACACTGGAAATTCACATCAAGTAGCTTCTTCGGAAACAGGCAAAGCAGAAGGTATGCAATTGCCTTCCTTAAATCGGGGGAAACATCG
>TRINITY_DN85018_c0_g1_i2 from sample A5 / Example unspliced isoform:GATGCGACTCGGGTCGAAATCACAGTTCCGTTCATGGTTCACCCGCATCATTATTTCACCATGCTCCGACTCCGAGTCGAGTCGGAACATAAAAAAAAGAAAAAGAATCGCGCTGGATCGATCAAGAGCATAATATATTTTTGTTGCTGGATTCTGGCAAGGCTGTTTTCTTTTATGTTTGCTGGGTTCCGGCGAGGGTT
GCCAAGCAGGGGGTGTTTTTCCAACAAAGCGTTTCAGGGCTGGATTCGGAGCAGATACTTTTTTTCATTCCCACACCATTTCGACTTGTTTCTGGTGAATGGACATTTTATTAGGGCATCATAGGAAATGGATTTCCACAGGCTCAACGAAGGATTTATAGGGTTACTGCTGCTTTCTTCTCTTCTGCTATTCCCAGCAT
CACCGGACGCTAAAGAAATCATAAGCTCGGTATCCGAAGACAATTCACGGGATGGAAGTAGTACCCAATTCAGAAATCAGAAGAGAATAATCGATCAGgtgaataccctgaatttctcatattttgtgtcaattttattatttattatgaattgtaacgagtagctaattcgaggattcgggtctgggttaatgtttgga
ttgggttttattctttattacgtgtctccgaaggtccctcgaattgaacatatgaccacttgttgacacagAGAATTGTCGATGGTTCCAGCCCATCACCGTCAATAACAACAGTTTTACATTCAGATCAATGTTCGTCCATTCTTTCAGATTCACATATTTCTAATTCGCCTCCTCTTGAACACTTAGGAAAGAAGAGT
GACAAAACCAAGGCAGTTGTTACAGCTGTCATTATTACTGCAATATCAACTCTTGCGCTCGCGGGGATGTTTTCTAACTTGTATCAAAAGTTTGCCACTGGTCGACATGGATCGAATGAGCAAAAGGATGATAGGCCTCTTATATTTTCAAGCGTAGAAAGGGTGTCAGTTAGTCATTCTTATGGTGAATCAAATGTGTT
AAATTACACTGGAAATTCACATCAAGTAGCTTCTTCGGAAACAGGCAAAGCAGAAGGTATGCAATTGCCTTCCTTAAATCGGGGGAAACATCG
Intron 2 GTGAATACCC ... GAACACTTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.52 | 5 | 5 | 8 |
| A2 | 35.71 | 9 | 3 | 7 |
| A3 | 42.86 | 4 | 0 | 6 |
| A4 | 33.33 | 4 | 0 | 4 |
| A5 | 55.56 | 6 | 7 | 8 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 66.67 | 1 | 0 | 4 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 100 | 0 | 0 | 2 |
| A10 | 35.71 | 9 | 3 | 7 |
>TRINITY_DN124141_c8_g1_i1 from sample A1 / Example spliced isoformAAAAAAAAGAAAAAGAATCGCGCTGGATCGATCAAGAGCATAATATATTTTTGTTGCTGGATTCTGGCAAGGCTGTTTTCTTTTATGTTTGCTGGGTTCCGGCGAGGGCTGCCAAGCAGGGGGTGTTTTTCCAACAAAGCGTTTCAGGGCTGGATTCGGAGCAGATGCTTTTTTTCATTCCCACACCATTTCGACTTATT
TCTGGTGAATGGACATTTTATTAGGGCATCATAGGAAATGGATTTCCACAGGCTCAACGAAGGATTTATAGGGTTACTGCTGCTTTCTTCTCTTCTGCTATTCCCAGCATCACCGGACGCTAAAGAAATCATAAGCTCGGTATCCGAAGACAATTCACGGGATGGAAGTAGTACCCAATTCAGAAATCAGAAGAGAATAA
TCGATCAGGAAAGAAGAGTGACAAAACCAAGGCAGTTGTTACAGCTGTCATTATTACTGCAATATCAACTCTTGCGCTCGCGGGGATGTTTTCTAACTTGTATCAAAAGTTTGCCACTGGTCGACATGGATCGAATGAGCAAAAGGATGATAGGCCTCTTATATTTTCAAGCGTAGAAAGGGTGTCAGTTAGTCATTCTT
ATGGTGAATCAAATGTGTTAAATTACACTGGAAATTCACATCAAGTAGCTTCTTCGGAAACAGGCAAAGCAGAAGGTATGCAATTGCCTT
>TRINITY_DN124141_c8_g1_i2 from sample A1 / Example unspliced isoform:AAAAAAAAGAAAAAGAATCGCGCTGGATCGATCAAGAGCATAATATATTTTTGTTGCTGGATTCTGGCAAGGCTGTTTTCTTTTATGTTTGCTGGGTTCCGGCGAGGGCTGCCAAGCAGGGGGTGTTTTTCCAACAAAGCGTTTCAGGGCTGGATTCGGAGCAGATGCTTTTTTTCATTCCCACACCATTTCGACTTATT
TCTGGTGAATGGACATTTTATTAGGGCATCATAGGAAATGGATTTCCACAGGCTCAACGAAGGATTTATAGGGTTACTGCTGCTTTCTTCTCTTCTGCTATTCCCAGCATCACCGGACGCTAAAGAAATCATAAGCTCGGTATCCGAAGACAATTCACGGGATGGAAGTAGTACCCAATTCAGAAATCAGAAGAGAATAA
TCGATCAGgtgaataccctgaatttctcatattttgtgtcaattttattatttattatgaattgtaacgagtagctaattcgaggattcgggtctgggttaatgtttggattgggttttattctttattacgtggctccgaaggtccctcgaattgaacatatgaccacttgttgacacagagaattgtcgatggttcca
gcccatcaccgtcaataacaacagttttacattcagatcaatgttcgtccattctttcagattcacatatttctaattcgcctcctcttgaacacttagGAAAGAAGAGTGACAAAACCAAGGCAGTTGTTACAGCTGTCATTATTACTGCAATATCAACTCTTGCGCTCGCGGGGATGTTTTCTAACTTGTATCAAAAG
TTTGCCACTGGTCGACATGGATCGAATGAGCAAAAGGATGATAGGCCTCTTATATTTTCAAGCGTAGAAAGGGTGTCAGTTAGTCATTCTTATGGTGAATCAAATGTGTTAAATTACACTGGAAATTCACATCAAGTAGCTTCTTCGGAAACAGGCAAAGCAGAAGGTATGCAATTGCCTT