sp|Q9XIE2|AB36G_ARATH ----> ABC transporter G family member 36
Intron 1 GTGCCTAAGT ... TGCATATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.09 | 95 | 79 | 77 |
| A2 | 53.37 | 76 | 83 | 91 |
| A3 | 47.98 | 58 | 55 | 52 |
| A4 | 42.22 | 65 | 43 | 52 |
| A5 | 56.9 | 25 | 40 | 26 |
| A6 | 56.25 | 56 | 80 | 64 |
| A7 | 47.52 | 111 | 102 | 99 |
| A8 | 50.34 | 148 | 132 | 168 |
| A9 | 48.63 | 122 | 108 | 123 |
| A10 | 46.67 | 100 | 89 | 86 |
>TRINITY_DN46762_c3_g1_i21 from sample A8 / Example spliced isoformTCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTTTT
CTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCTCCCCTGAAATGA
GGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACC
TTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGA
TTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCT
GCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTATTGATTTCAAACATCATTTGGGGATAGA
CATTGCAGAGCATTACAAAAACTCTTCCCTCCATAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTCTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGT
TGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTACGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGA
TGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTATTTTTTATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGC
ATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATT
CCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGATATAGATCCAACAACGCCCTTGGTCATGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGACCACTCTCATTAGTGCT
ATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATCTTTCCATGATATCTCCAATACTGATCAGATATATGTCTGCAATTTTTCATCAAAGCTTTAGTTTTGAATTCA
TTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTAATCATGCCCATATTTTCAGATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTGAAAGGGCATGCTA
GCAAACAATCTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGC
ATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCACTTGCAAACACGAGGAACACCATCTCTTGGTTC
AAACATAGAAGACTGCATGAATATTTTTGGACAGATTCTTTGTATTAGCATATTCAAAGGCTGTTTTAGTCTCTGTTTCTGTGCAATTTGTTAGGA
>TRINITY_DN46762_c3_g1_i11 from sample A8 / Example unspliced isoform:TCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCGTGATTTGTTTCACTACACACGCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGA
TCTTTCTCACGTTCCATGTTTTCTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGT
TGACATGCCTCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGG
ATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGT
CATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTC
TAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTATTGATT
TCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCTTCCCTCCATAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTCTTTGTGGAAGCAGTGGTGGAGTTACT
AGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTACGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAA
CTGAGAAGCCCGATGAATGTGATGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTATTTTTTATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGG
AACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACG
CATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGgtgcctaagttcttctttttgacaagataactgtgttaacaatattatattttgaattgaaatttgcatggttattgatgattgcagtcaa
atatattcgttatgcatattagATATAGATCCAACAACGCCCTTGGTCATGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGACCACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCA
TATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATCTTTCCATGATATCTCCAATACTGATCAGATATATGTCTGCAATTTTTCATCAAAGCTTTAGTTTTGAATTCATTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTAAT
CATGCCCATATTTTCAGATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTGAAAGGGCATGCTAGCAAACAATCTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGC
CTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGC
TGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCACTTGCAAACACGAGGAACACCATCTCTTGGTTCAAACATAGAAGACTGCATGAATATTTTTGGACAGATTCTTTGTATTAGCATATTCAAAGGCTGTT
TTAGTCTCTGTTTCTGTGCAATTTGTTAGGA
Intron 2 GTATGTACTA ... CTATTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.91 | 20 | 193 | 127.5 |
| A2 | 95.4 | 5 | 150 | 57.5 |
| A3 | 85.63 | 18 | 134 | 80.5 |
| A4 | 91.92 | 8 | 125 | 57 |
| A5 | 94.56 | 4 | 93 | 46 |
| A6 | 77 | 5 | 27 | 6.5 |
| A7 | 74.16 | 6 | 30 | 4.5 |
| A8 | 91.67 | 2 | 42 | 2 |
| A9 | 95.4 | 1 | 37 | 4.5 |
| A10 | 100 | 0 | 24 | 0 |
>TRINITY_DN123836_c3_g2_i11 from sample A3 / Example spliced isoformTGAGAAGCCCGATGAATGTGATGAAGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTGTTTTTGATTGAAGGAGCTAAAGGTAATCATTTGACTAAAGTAGATATGAAAAGATGACATGAC
AA
>TRINITY_DN123836_c3_g2_i2 from sample A3 / Example unspliced isoform:TCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGA
AGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGTGTCCAGTTTGGCCTTGCATCGTCTAGTGAAATTAGTAAGGTGTCAGTCTATGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGg
tatgtactatgcagtatggttgcaaaattctcaatcatttgatcattctatcacaatatgttcatgattatattaattggcagaaaaccttcactctaaatgcagcgtgatttactatttctagAAGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAG
GAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTGTTTTTGATTGAAGGAGCAAAAGGTATGCAATTCAAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCATACAGAAGAG
Intron 3 GTCATTTTGG ... GGAGCTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.63 | 36 | 146 | 174 |
| A2 | 77.39 | 45 | 143 | 165 |
| A3 | 83.74 | 32 | 190 | 139.5 |
| A4 | 84.23 | 22 | 132 | 103 |
| A5 | 90.34 | 10 | 116 | 71 |
| A6 | 79.55 | 18 | 63 | 77 |
| A7 | 83.38 | 28 | 122 | 159 |
| A8 | 76.47 | 35 | 94 | 133.5 |
| A9 | 83.3 | 22 | 103 | 116.5 |
| A10 | 80.54 | 25 | 82 | 125 |
>TRINITY_DN47749_c0_g2_i5 from sample A10 / Example spliced isoformAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAG
TAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGG
CCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGTTCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCTTGGGCATTACATGTACATTTGAAG
GAGGGCAAAAGATTGGCATTGTTGGTTGAACAGGAAGTGGGAAGACCACTCTCATTAGTCCTATA
>TRINITY_DN47749_c0_g2_i1 from sample A10 / Example unspliced isoform:AGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGgtcattttggacacattagacttccaacaccaatttatcatccttctcatgtggaggagcttaaacgaattcttagcaaaatatgtttaaactgtttttgattgaaggagctaaag
TTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTT
AAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGTTCTTCTTTTTGACAAGATAACTGTGTTAACAATATTAT
ATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCTTGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAGGAAGTGGGAAGACCACTCTCATTAGTCCTATA
Intron 4 GCTATTCCCA ... GCACAAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 154 | 112 | 196 |
| A2 | 59.15 | 115 | 85 | 248 |
| A3 | 57.79 | 107 | 77 | 216 |
| A4 | 49.67 | 115 | 82 | 145 |
| A5 | 55.56 | 74 | 59 | 126 |
| A6 | 69.84 | 19 | 22 | 66 |
| A7 | 64.71 | 45 | 31 | 134 |
| A8 | 59.02 | 50 | 31 | 113 |
| A9 | 61.02 | 52 | 45 | 117.8 |
| A10 | 65.35 | 35 | 52 | 80 |
>TRINITY_DN46762_c3_g1_i7 from sample A8 / Example spliced isoformTCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTTTT
CTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCTCCCCTGAAATGA
GGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACC
TTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGA
TTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCT
GCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGAGTAAGGTGTCAGTCTACGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAAC
ATGTGGAACTGAGAAGCCCGATGAATGTGATG
>TRINITY_DN46762_c3_g1_i11 from sample A8 / Example unspliced isoform:TCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCGTGATTTGTTTCACTACACACGCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGA
TCTTTCTCACGTTCCATGTTTTCTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGT
TGACATGCCTCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGG
ATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGT
CATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTC
TAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGgctattcccagagtcccaaatatcaaagataaatacaacctagctacatggatgttggaagttagctctattgatt
tcaaacatcatttggggatagacattgcagagcattacaaaaactcttccctccataagcggaacagagacttggttaaagagatcaaaacttcttctccgggagcaaaggatctatactttgctacctagtagtcacaatctttcttcggatagttcaagacttcaagtcctctttgtggaagcagtggtggagttact
agtgaagtccagattgtaatgttgttcaatacttcttcacattagtctgttctctactctttggaacaatcttttggaaagtcagcacaaaaagAGTAAGGTGTCAGTCTACGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAA
CTGAGAAGCCCGATGAATGTGATGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTATTTTTTATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGG
AACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACG
CATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGTTCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAA
ATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCATGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGACCACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCA
TATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATCTTTCCATGATATCTCCAATACTGATCAGATATATGTCTGCAATTTTTCATCAAAGCTTTAGTTTTGAATTCATTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTAAT
CATGCCCATATTTTCAGATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTGAAAGGGCATGCTAGCAAACAATCTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGC
CTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGC
TGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCACTTGCAAACACGAGGAACACCATCTCTTGGTTCAAACATAGAAGACTGCATGAATATTTTTGGACAGATTCTTTGTATTAGCATATTCAAAGGCTGTT
TTAGTCTCTGTTTCTGTGCAATTTGTTAGGA
Intron 5 GTAAGGTTTC ... ACCTTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.9 | 84 | 27 | 38 |
| A2 | 25.83 | 89 | 28 | 34 |
| A3 | 24.2 | 83 | 28 | 25 |
| A4 | 24.1 | 74 | 15 | 32 |
| A5 | 22.63 | 53 | 11 | 20 |
| A6 | 22.73 | 17 | 2 | 8 |
| A7 | 16.98 | 22 | 4 | 5 |
| A8 | 33.33 | 15 | 9 | 6 |
| A9 | 20 | 34 | 8 | 9 |
| A10 | 15.56 | 38 | 6 | 8 |
>TRINITY_DN123836_c3_g2_i9 from sample A3 / Example spliced isoformTCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGA
AGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGGCTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGC
ATTGAAAGACCAAGAACTAGTAAATGCCCTTGCAGATACTGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACT
GCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCGTGAGTTGTTTCACTACACACGGTACCTGCTATTCTCTTTTTGTTCATATTTATTTTACCAAATATTTTCCCATATGA
AATGATATGGGATTTGTTTGTGTGTAGCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGT
>TRINITY_DN123836_c3_g2_i4 from sample A3 / Example unspliced isoform:TCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGA
AGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGGCTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGC
ATTGAAAGACCAAGAACTAGTAAATGCCCTTGCAGATACTGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTgtaaggtttcgacctttttaatccactaaga
attccatgcaattttatagacccaatggaaataatctatgatatttttaactatgaaaaggttttatacacctatgcatcacattgactagtttcatggaaccatgttgaccttcatagTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGG
AGCTGGTGCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCGTGAGTTGTTTCACTACACACGGTACCTGCTATTCTCTTTTTGTTCATATTTATTTTACCAAATATTTTCCCATATGAAATGATATGGGATTTGTTTGTGTGTAGCTCTTGGGAAATCTCAAGCTGTC
ATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGT
Intron 6 GTATGGAACT ... TCATCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.78 | 112 | 60 | 35 |
| A2 | 32 | 102 | 53 | 43 |
| A3 | 25.49 | 114 | 36 | 42 |
| A4 | 28.47 | 98 | 50 | 28 |
| A5 | 35.71 | 63 | 35 | 35 |
| A6 | 20 | 16 | 4 | 4 |
| A7 | 32.35 | 46 | 18 | 26 |
| A8 | 18.37 | 40 | 9 | 9 |
| A9 | 22.81 | 22 | 11 | 2 |
| A10 | 29.73 | 39 | 14 | 19 |
>TRINITY_DN46762_c3_g1_i17 from sample A8 / Example spliced isoformTCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTTTT
CTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCTCCCCTGAAATGA
GGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACC
TTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGA
TTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCT
GCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTATTGATTTCAAACATCATTTGGGGATAGA
CATTGCAGAGCATTACAAAAACTCTTCCCTCCATAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTCTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGT
TGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTACGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGA
TGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACT
>TRINITY_DN46762_c3_g1_i14 from sample A8 / Example unspliced isoform:TCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTTTT
CTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCTCCCCTgtatgga
acttgagccatgagactagtctatcatgtgatccagctattgccaatttttaggaattctcttgcttgaaaggtttggctgactaatcctggattcatctacagGAAATGAGGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGG
GTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCT
CCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACT
GGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGA
AGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTATTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCTTCCCTCCATAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGG
ATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTCTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTA
CGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAAT
TCTTAGCAAAATATGTTTAAACTATTTTTTATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCC
ATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGT
GCCTAAGTTCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCATGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGT
GGGAAGACCACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATCTTTCCATGATATCTCCAATACTGATCAGATATATGTCTGCAATTTTTC
ATCAAAGCTTTAGTTTTGAATTCATTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTAATCATGCCCATATTTTCAGATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAAT
CTTCAAGTGTGAAAGGGCATGCTAGCAAACAATCTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCA
TCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCACTTGCAAAC
ACGAGGAACACCATCTCTTGGTTCAAACATAGAAGACTGCATGAATATTTTTGGACAGATTCTTTGTATTAGCATATTCAAAGGCTGTTTTAGTCTCTGTTTCTGTGCAATTTGTTAGGA
Intron 7 GTAAGAAAGC ... GGTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.52 | 154 | 44 | 26 |
| A2 | 19.05 | 102 | 36 | 12 |
| A3 | 16.44 | 122 | 31 | 17 |
| A4 | 18.77 | 132 | 42 | 19 |
| A5 | 22.61 | 89 | 33 | 19 |
| A6 | 26.67 | 11 | 2 | 6 |
| A7 | 22 | 39 | 12 | 10 |
| A8 | 17.5 | 33 | 9 | 5 |
| A9 | 15.56 | 38 | 10 | 4 |
| A10 | 23.81 | 32 | 15 | 5 |
>TRINITY_DN125477_c4_g1_i12 from sample A2 / Example spliced isoformCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTAGCAGCTCTCCATACGACCTTGGAAAATTCTGGCGGAAGGACAAACCCTCCCTTGCCGAGTCCCGACGACACACTTCAACTCACGCGCATGTAAA
CTGCCACGCGGCCATTCAAAAGGGAGTGGCACGACGATGGAGTACTTATTATTACCAGCTCTCCTGTGTCTCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTA
GAAGGACGAAGAAGATCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGAAGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGG
CTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGCATTGAAAGACCAGGAACTAGTAAATGCTCTTGCAGATACTGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGA
CCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCT
TCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTCTTCTGCAGATGCGAATAATTCTTCTAA
AATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCCCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAG
ACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTG
AGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATG
ACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATA
ATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTGTTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCT
TCCCTCCACAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTGTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTC
TGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTATGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGGTATGTACTATGCAGTATGGTTG
CAAAATTCTCAATCATTTGATCATTCTATCACAATATGTTCATGATTATATTAATTGGCAGAAAACCTTCACTCTAAATGCAGCGTGATTTACTATTTCTAGAAGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCA
AAATATGTTTAAACTGTTTTTGATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTA
TGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGT
TCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCTTGGGCATTACATGCACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGAC
CACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATATTTCCATGAGATCTCCAGTATCGATCAGATATATGTCTTTGCACTTCTTCATCGAA
GCTTTAGTTTTGAATTCATTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTAATCATGCCCATATTTTCAGATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAA
GTGTAAAAGGGCATGCTAGCAAACAATGTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACT
TTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCAAACACGAGGAACATC
ATCTCTTGGTTCAAACATAGAAGACTGCATGCAGATTTTCGGACAGATTCTCTGTATTAGCAGATTCAAAGTCTGCTTAGTCTCTGTTTCTGTGCAATTTGTTAGGACACATTGTACCTTATTGATGTTCTTCTCATCTCTAATGAGGGGCCAATAGAAAAGGTTTATGGCATGTTTGTTATTTCATTGATATAATTGAT
CCATGATTTTCAGTATTTCCAAAATACTCCTTTCAAATTTCTATTTAATAATCATTAAGGTATAAAGCACATCACAGAAAATGGCAGCAAGGCACATTGCCAAGAAGTTGCAAAAACTTCAGAATTCGTGGTGTGTACTACAAAGT
>TRINITY_DN125477_c4_g1_i4 from sample A2 / Example unspliced isoform:AGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATC
CTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTCTTCTGCAGATGCGAATAATTCTTgtaagaaagctattaaccatctcttgctcagatttttttgaata
aattaaaatttaaagagtttagatagaaaatgaattccatgtttcttagttctataacaaattcttcattgtttggttatgcagCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTT
CAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCCCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGG
AAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACA
AAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTT
GTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATA
CAACCTAGCTACATGGATGTTGGAAGTTAGCTCTGTTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCTTCCCTCCACAAG
Intron 8 GTGCCTAAGT ... ATGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.69 | 75 | 79.2 | 69 |
| A2 | 54.05 | 73.8 | 83 | 90.5 |
| A3 | 47.5 | 60.3 | 55 | 54 |
| A4 | 39.26 | 71.8 | 43 | 49.8 |
| A5 | 60.76 | 23.3 | 40 | 32 |
| A6 | 60.35 | 48.3 | 80 | 66.9 |
| A7 | 49.29 | 102.8 | 102 | 97.8 |
| A8 | 47.84 | 163.3 | 132 | 167.4 |
| A9 | 47.04 | 122.8 | 108.3 | 109.8 |
| A10 | 46.86 | 97 | 89.1 | 82 |
>TRINITY_DN46762_c3_g1_i22 from sample A8 / Example spliced isoformTCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTTTT
CTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCTCCCCTGTATGGA
ACTTGAGCCATGAGACTAGTCTATCATGTGATCCAGCTATTGCCAATTTTTAGGAATTCTCTTGCTTGAAAGGTTTGGCTGACTAATCCTGGATTCATCTACAGGAAATGAGGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGG
GTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCT
CCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACT
GGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGA
AGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTATTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCTTCCCTCCATAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGG
ATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTCTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTA
CGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAAT
TCTTAGCAAAATATGTTTAAACTATTTTTTATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCC
ATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGTC
AAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCATGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGACCACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAG
CATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATCTTTCCATGATATCTCCAATACTGATCAGATATATGTCTGCAATTTTTCATCAAAGCTTTAGTTTTGAATTCATTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTA
ATCATGCCCATATTTTCAGATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTGAAAGGGCATGCTAGCAAACAATCTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATG
GCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGT
GCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCACTTGCAAACACGAGGAACACCATCTCTTGGTTCAAACATAGAAGACTGCATGAATATTTTTGGACAGATTCTTTGTATTAGCATATTCAAAGGCTG
TTTTAGTCTCTGTTTCTGTGCAATTTGTTAGGA
>TRINITY_DN46762_c3_g1_i16 from sample A8 / Example unspliced isoform:TCAACTTGCATTTGAATTAAGAATACCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGT
GCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTTTT
CTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCTCCCCTGAAATGA
GGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACC
TTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGA
TTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCT
GCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTATTGATTTCAAACATCATTTGGGGATAGA
CATTGCAGAGCATTACAAAAACTCTTCCCTCCATAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTCTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGT
TGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTACGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGA
TGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTATTTTTTATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGC
ATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTATGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATT
CCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGgtgcctaagttcttctttttgacaagataactgtgttaacaatattatattttgaattgaaatttgcatggttattgatgattgcagTCAAATATATTCGTTATGCATATTAG
ATATAGATCCAACAACGCCCTTGGTCATGGGCATTACATGTACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGACCACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTC
CACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATCTTTCCATGATATCTCCAATACTGATCAGATATATGTCTGCAATTTTTCATCAAAGCTTTAGTTTTGAATTCATTTGTTTTGCAGCGTCTGTACTGTTTTCAATCAAAATTTTATTTTGGAGATTTTAAAGTTGTAATCATGCCCATATTTTCAGATATC
AATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTGAAAGGGCATGCTAGCAAACAATCTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATT
ATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTA
AAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCACTTGCAAACACGAGGAACACCATCTCTTGGTTCAAACATAGAAGACTGCATGAATATTTTTGGACAGATTCTTTGTATTAGCATATTCAAAGGCTGTTTTAGTCTCTGTTTCTGTGCAAT
TTGTTAGGA
Intron 9 GTAAATGCTC ... CTGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.54 | 91 | 150 | 107 |
| A2 | 63.51 | 79 | 151 | 124 |
| A3 | 51.1 | 100 | 126 | 83 |
| A4 | 51.69 | 93 | 115 | 84 |
| A5 | 50 | 70 | 85 | 55 |
| A6 | 68.85 | 19 | 47 | 37 |
| A7 | 67.57 | 30 | 73 | 52 |
| A8 | 56.29 | 33 | 60 | 25 |
| A9 | 66.67 | 37 | 93 | 55 |
| A10 | 61.7 | 45 | 80 | 65 |
>TRINITY_DN125477_c4_g1_i7 from sample A2 / Example spliced isoformCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTAGCAGCTCTCCATACGACCTTGGAAAATTCTGGCGGAAGGACAAACCCTCCCTTGCCGAGTCCCGACGACACACTTCAACTCACGCGCATGTAAA
CTGCCACGCGGCCATTCAAAAGGGAGTGGCACGACGATGGAGTACTTATTATTACCAGCTCTCCTGTGTCTCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTA
GAAGGACGAAGAAGATCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGAAGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGG
CTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGCATTGAAAGACCAGGAACTAAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATG
AATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCTTCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAA
ATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTCTTCTGCAGATGCGAATAATTCTTCTAAAATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATT
CTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCCCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAGACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTA
ACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTGAGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGT
ATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATGACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCT
GTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATAATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAA
AGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTGTTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCTTCCCTCCACAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCG
GATAGTTCAAGACTTCAAGTCCTGTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTCTGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTATGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAA
TGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGGTATGTACTATGCAGTATGGTTGCAAAATTCTCAATCATTTGATCATTCTATCACAATATGTTCATGATTATATTAATTGGCAGAAAACCTTCACTCTAAATGCAGCGTGATTTACTATTTCTAGA
AGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCAAAATATGTTTAAACTGTTTTTGATTGAAGGAGC
>TRINITY_DN125477_c4_g1_i3 from sample A2 / Example unspliced isoform:CGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTAGCAGCTCTCCATACGACCTTGGAAAATTCTGGCGGAAGGACAAACCCTCCCTTGCCGAGTCCCGACGACACACTTCAACTCACGCGCATGTAAA
CTGCCACGCGGCCATTCAAAAGGGAGTGGCACGACGATGGAGTACTTATTATTACCAGCTCTCCTGTGTCTCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTA
GAAGGACGAAGAAGATCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGAAGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGG
CTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGCATTGAAAGACCAGGAACTAgtaaatgctcttgcagatactgactatgtgaaagcaattcaacttgcatttgaattaagaaga
ccttataagctccttaatgtctttactgaactgtatgcagAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCT
TCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTCTTCTGCAGATGCGAATAATTCTTCTAA
AATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCCCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAG
ACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTG
AGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATG
ACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATA
ATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTGTTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCT
TCCCTCCACAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTGTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTC
TGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTATGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGGTATGTACTATGCAGTATGGTTG
CAAAATTCTCAATCATTTGATCATTCTATCACAATATGTTCATGATTATATTAATTGGCAGAAAACCTTCACTCTAAATGCAGCGTGATTTACTATTTCTAGAAGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCA
AAATATGTTTAAACTGTTTTTGATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTA
TGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGT
TCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCTTGGGCATTACATGCACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGAC
CACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATATTTCCATGAGATCTCCAGTATCGATCAGATATATATATCAATGTCCCCATTGACAA
TTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTAAAAGGGCATGCTAGCAAACAATGTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGA
ATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTAC
GGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCAAACACGAGGAACATCATCTCTTGGTTCAAACATAGAAGACTGCATGCAGATTTTCGGACAGATTCTCTGTATTAGCAGATTCAAAGTCTGCTTAGTCTCTGTTTCTGTGCAATTTGTTAGGACACATTGTACCTTAT
TGATGTTCTTCTCATCTCTAATGAGGGGCCAATAGAAAAGGTTTATGGCATGTTTGTTATTTCATTGATATAATTGATCCATGATTTTCAGTATTTCCAAAATACTCCTTTCAAATTTCTATTTAATAATCATTAAGGTATAAAGCACATCACAGAAAATGGCAGCAAGGCACATTGCCAAGAAGTTGCAAAAACTTCAG
AATTCGTGGTGTGTACTACAAAGT
Intron 10 GTCTTTGCAC ... ATATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.57 | 87 | 77 | 101 |
| A2 | 39.62 | 96 | 44 | 82 |
| A3 | 46.13 | 73 | 54 | 71 |
| A4 | 44.05 | 47 | 26 | 48 |
| A5 | 54.39 | 26 | 36 | 26 |
| A6 | 42.81 | 185 | 64 | 213 |
| A7 | 43.18 | 248 | 106 | 271 |
| A8 | 42.83 | 281 | 139 | 282 |
| A9 | 44.76 | 211 | 129 | 213 |
| A10 | 42.06 | 186 | 86 | 184 |
>TRINITY_DN125477_c4_g1_i3 from sample A2 / Example spliced isoformCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTAGCAGCTCTCCATACGACCTTGGAAAATTCTGGCGGAAGGACAAACCCTCCCTTGCCGAGTCCCGACGACACACTTCAACTCACGCGCATGTAAA
CTGCCACGCGGCCATTCAAAAGGGAGTGGCACGACGATGGAGTACTTATTATTACCAGCTCTCCTGTGTCTCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTA
GAAGGACGAAGAAGATCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGAAGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGG
CTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGCATTGAAAGACCAGGAACTAGTAAATGCTCTTGCAGATACTGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGA
CCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCT
TCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTCTTCTGCAGATGCGAATAATTCTTCTAA
AATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCCCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAG
ACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTG
AGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATG
ACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATA
ATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTGTTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCT
TCCCTCCACAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTGTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTC
TGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTATGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGGTATGTACTATGCAGTATGGTTG
CAAAATTCTCAATCATTTGATCATTCTATCACAATATGTTCATGATTATATTAATTGGCAGAAAACCTTCACTCTAAATGCAGCGTGATTTACTATTTCTAGAAGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCA
AAATATGTTTAAACTGTTTTTGATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTA
TGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGT
TCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCTTGGGCATTACATGCACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGAC
CACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATATTTCCATGAGATCTCCAGTATCGATCAGATATATATATCAATGTCCCCATTGACAA
TTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAAGTGTAAAAGGGCATGCTAGCAAACAATGTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGA
ATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACTTTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTAC
GGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCAAACACGAGGAACATCATCTCTTGGTTCAAACATAGAAGACTGCATGCAGATTTTCGGACAGATTCTCTGTATTAGCAGATTCAAAGTCTGCTTAGTCTCTGTTTCTGTGCAATTTGTTAGGACACATTGTACCTTAT
TGATGTTCTTCTCATCTCTAATGAGGGGCCAATAGAAAAGGTTTATGGCATGTTTGTTATTTCATTGATATAATTGATCCATGATTTTCAGTATTTCCAAAATACTCCTTTCAAATTTCTATTTAATAATCATTAAGGTATAAAGCACATCACAGAAAATGGCAGCAAGGCACATTGCCAAGAAGTTGCAAAAACTTCAG
AATTCGTGGTGTGTACTACAAAGT
>TRINITY_DN125477_c4_g1_i12 from sample A2 / Example unspliced isoform:CGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTGCCCGATCGATCCTTGTGCGGGCGACGCGGTGGTTGGCACTAGCAGCTCTCCATACGACCTTGGAAAATTCTGGCGGAAGGACAAACCCTCCCTTGCCGAGTCCCGACGACACACTTCAACTCACGCGCATGTAAA
CTGCCACGCGGCCATTCAAAAGGGAGTGGCACGACGATGGAGTACTTATTATTACCAGCTCTCCTGTGTCTCGCACACAATCTTTATTTTCTGCTTCTGCTTCTGTTCAGCTGGCTTCGTTGGTTGGTTGGTTGCTTTTCACTTACAGACTAGAAGGACGAGGAAGACCAGTTGGTTGGTTGCTCTTTACCCACAGACTA
GAAGGACGAAGAAGATCAGTTGGTTGGTTGCTCTTTACCCACAGACTAACAAGAGGGAAGGAAGGCCAGTGAGTGAAGCAGTAAATCACTTCGTTTACTCGCAGTCTGGCACGATGGAAGAAGCTGCTCGGTTTCCCAGGCGACTTTAACAGGCGTCCAGTTTGGCCTTGCATCGTCCAGAGAAATTATCTGGGCAATGG
CTATTGGCAAGAATACAGAAATGCTGGCAACTGGTGGCAGTGATTCTCTTGTCAATTTGTGGCATGATTGCACTGCTATAGACGAGGAGGAGGCTCTGCTCAAAGAGGAGGAAGCAGCATTGAAAGACCAGGAACTAGTAAATGCTCTTGCAGATACTGACTATGTGAAAGCAATTCAACTTGCATTTGAATTAAGAAGA
CCTTATAAGCTCCTTAATGTCTTTACTGAACTGTATGCAGAGAATGTGATCTCTGTGAATGAGATGCTTGCTCCTAGATGAAAGATTTGGAAATGATACCATGAATTCGGGCCTTACTGCGCTGAAGAGTCATAGCATCTTTCCACAAGCATATTGGTATTGGATAGGAGCTGGTGCTTTGTTGGGGTTTCCATTACTCT
TCAATATGCTTCTTAACTTGGGCTCTTGCATATCTAAATCCTCTTGGGAAATCTCAAGCTGTCATTTCTCAGGAAGTTTTTAAGTAAATGCAAACCCAACAAAATGGTACAGAGCAAGGGCTCAATACAAGAGCATCAAGCTCAAGAAAGGGATCTTTCTCACGTTCCATGTCTTCTGCAGATGCGAATAATTCTTCTAA
AATGCAGATCAAACAAATGAGCAGCCAATCAACTAATCTAGCAGGCGATAATGGGCTGGCTTTGGAGACTGCAACAGGAGTTGCTCCAAAGCGAGGAATGATTCTTCCATTTCAGCTACTAGCCATGTCTTTTGAAGATGTCAAACACTTTGTTGACATGCCCCCCCTGAAATGAGGGAATAAGGAGTTACTGAAGATAG
ACTTCGAATGCTCTGAGATGTTACAGGTGCATCCAGACCTGGTGTTCTTACAGCATTGATGGGGGTCAGCGGTGCAGGGAAGACAACTCTCATGGATGTCTTAACTGGAAGGAAGACTGGAGGATATATCGAGAGTGATATATAGATCTCTGGATTTCCCAAAAAGCAAGAAACCTTTGCTCAGATTTTTGGTTACTGTG
AGCGGAATGATATACATTCTCCACAGGTCATTATTCGGGAATCAGTGTTATATTCAGCATTTCTCCATCTTCCAAAGGATGTTGACAAAGAAACCAAAGTTGTATGTCTACAAAACTAATCAATTTTTCTTATTTGACATGGTGCCAAATTGTCATTTTACTGACCTGCAAAAGATTCAATTTACAGTCCTTTTTTGATG
ACGTCAAAGGACTTGTGGAATTAGACAATTTAAGGGATGCATTGGTAGCCTACCTAGTGTGACTGGATTGTTAACTGAACAAAGGAAAAGGCTAACAATAGCTGTGCAGCTTGTTTCATATCCTTCTATAATTTTCATGGATGATCCCACTTCTAGTTTGGATGCCAGAGCAGCTGCGATTGTTATGCGAACTGTTCATA
ATACAGTATATACTGGAAGGACTGTTGTCTGTAACATTCATCAGCCTAGCATTGACATCTTTGAAGCCTTTGATGAGGCTATTCCCAGAGTCCCAAATATCAAAGATAAATACAACCTAGCTACATGGATGTTGGAAGTTAGCTCTGTTGATTTCAAACATCATTTGGGGATAGACATTGCAGAGCATTACAAAAACTCT
TCCCTCCACAAGCGGAACAGAGACTTGGTTAAAGAGATCAAAACTTCTTCTCCGGGAGCAAAGGATCTATACTTTGCTACCTAGTAGTCACAATCTTTCTTCGGATAGTTCAAGACTTCAAGTCCTGTTTGTGGAAGCAGTGGTGGAGTTACTAGTGAAGTCCAGATTGTAATGTTGTTCAATACTTCTTCACATTAGTC
TGTTCTCTACTCTTTGGAACAATCTTTTGGAAAGTCAGCACAAAAAGAGTAAGGTGTCAGTCTATGGAATGTCTTCTATTCAACATCCAACTCAGCTTGTGAATGCTCGACTGGGACTCCCGGTTAAGTCTGGTAAATGTGAAACATGTGGAACTGAGAAGCCCGATGAATGTGATGGTATGTACTATGCAGTATGGTTG
CAAAATTCTCAATCATTTGATCATTCTATCACAATATGTTCATGATTATATTAATTGGCAGAAAACCTTCACTCTAAATGCAGCGTGATTTACTATTTCTAGAAGTTGAAACTGTTTTGCAGGTCATTTTGGACACATTAGACTTCCAACACCAATTTATCATCCTTCTCATGTGGAGGAGCTTAAACGAATTCTTAGCA
AAATATGTTTAAACTGTTTTTGATTGAAGGAGCTAAAGTTGATGTTGGATGGGGAGATTCATCAAGCTGGGCAATATCAGGAACTACTGGTCTCAAGTGAGGCATTTAGGGAGCTTGTGAATGCACACAAGAACACTGTTTCTCAGCAAATCAGTAGTTGATTCAACGTCTGGAGGTTTTGTTAGGATAGCCATATCTTA
TGGTGTCTCATTGGACATATCATTGGTATTTAGTATTTAAAACCAAGGCACACTAGCAAACTACATTGTGTCTATAGAACGCATCAAACAGTACATGCACATTCCTAGTGAGGCACCAGTAGTTATAGAAGATCTCAGGCCACCAGCTAATTGGCCCTCGCATGGGAAGGTGGAATTACAAGAATCGAAGGTGCCTAAGT
TCTTCTTTTTGACAAGATAACTGTGTTAACAATATTATATTTTGAATTGAAATTTGCATGGTTATTGATGATTGCAGTCAAATATATTCGTTATGCATATTAGATATAGATCCAACAACGCCCTTGGTCTTGGGCATTACATGCACATTTGAAGGAGGGCAAAAGATTGGCATTGTTGGTTGAACAAGAAGTGGGAAGAC
CACTCTCATTAGTGCTATACTCTCATTAGAACAAGAAGTGGGAAGACCACGTTGGAGGCCAACCATACTTACTGATAAGCATATGTGTGGAAAGGAACCTTTCCACAAGCAAGCTGGAGAAGAGGATGCAAGTCAAATGAAATATTTCCATGAGATCTCCAGTATCGATCAGATATATgtctttgcacttcttcatcgaa
gctttagttttgaattcatttgttttgcagcgtctgtactgttttcaatcaaaattttattttggagattttaaagttgtaatcatgcccatattttcagATATCAATGTCCCCATTGACAATTGAGGATTTCAACCTTTTTGCTTCACCAAGAAAACTTTGTTGGACTTTACAACAACAGTCTTCCTCTGAATCTTCAA
GTGTAAAAGGGCATGCTAGCAAACAATGTGAAAATGACAAGTTGGACACTTCAAGCGACGAAGACTCGAGCGAAGCAGATGGCCTGACTTCCAACCATACTAATTATGAACCAAGTAAGAGAATGCAAGGGAAGCTGACTGTTTCTCTGAAAGGTGGGGCATTGCAAACTGTCCAAAGAACTGAATCTATGTCATCAACT
TTTTTTAGTCATATTTGCATGGATGAAATCCCAGAACCACAATTAGCAAACGTCATGCGAGTACATTCCCTTGAAAGAAGTGCTGGACAAAGAGATGCCAGCCTAAAAGCAAAGAGCCTTACGGTTATTTTGAGATCCATCTTTGCTGTGTTGTTTTTTTCTGCACTTCTGATGATTGTAAAGCAAACACGAGGAACATC
ATCTCTTGGTTCAAACATAGAAGACTGCATGCAGATTTTCGGACAGATTCTCTGTATTAGCAGATTCAAAGTCTGCTTAGTCTCTGTTTCTGTGCAATTTGTTAGGACACATTGTACCTTATTGATGTTCTTCTCATCTCTAATGAGGGGCCAATAGAAAAGGTTTATGGCATGTTTGTTATTTCATTGATATAATTGAT
CCATGATTTTCAGTATTTCCAAAATACTCCTTTCAAATTTCTATTTAATAATCATTAAGGTATAAAGCACATCACAGAAAATGGCAGCAAGGCACATTGCCAAGAAGTTGCAAAAACTTCAGAATTCGTGGTGTGTACTACAAAGT