sp|Q38931|FKB62_ARATH ----> Peptidyl-prolyl cis-trans isomerase FKBP62
Intron 1 GTATTTGAAC ... GTATTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.46 | 65 | 2 | 6 |
| A2 | 1.08 | 92 | 0 | 1 |
| A3 | 1.7 | 58.2 | 0 | 1 |
| A4 | 21.06 | 90 | 9 | 24 |
| A5 | 7.03 | 53 | 1 | 4 |
| A6 | 0 | 41.4 | 0 | 0 |
| A7 | 0 | 80.2 | 0 | 0 |
| A8 | 0 | 34.4 | 0 | 0 |
| A9 | 0 | 77.2 | 0 | 0 |
| A10 | 0 | 105.2 | 0 | 0 |
>TRINITY_DN104097_c1_g1_i5 from sample A5 / Example spliced isoformATAATTTTCAGTAACTCCCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAG
TGTGAGATTTTCCTCAGAAACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGA
AGTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAA
TTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAG
GGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTG
GAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTG
ATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATA
GAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGTAACGAGTTATTCTCTTTTGTTGGCATTCTTTCCTATCTCGAATACCTGGAAATTTTGACTCAAAACAAAGGTGGCATGGGAGGAACAGTTATATATCTATATATGTGTGTGTAT
GGCGGCATCAATATTGAAAATTTCCTTTGAAATACCTGTATGCAGGCTGC
>TRINITY_DN104097_c1_g1_i2 from sample A5 / Example unspliced isoform:TGAAACCGGTGATGAAGTTGAAGgtatttgaacccatgatttcctaatttgggaaaaaaaactagtgttaatttaatggccctgcaattatttttgggtttttgcacaggatgaatgacatttggtaattgtattggcagTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTC
CATTCAAATTCAAGCTTGGTCAAGGTGAGTCTTCTTATTCTCCCTCTTATTTACTTTATAATAGTTTCTGGGTCCGTGCCTTAGAATACTTTAAACTCAGATCGTCGTGCCTTTGAATTCATTAAACTTAGGTCGTCGCTGCAGGCATGTCGAAAAGGTGATTTATAATCTGATTTTTGCTGGTGTCATCAAATAACCAT
ACTTGATATGCTTGTCAAGGAGCACAAATGGTTACTAGCCCATAAGTCCTGTCATTATGGTTTTTACACTTGCTTCTTAAACTTGGAGCTTAGTTTGCAGGTCTTACTGAACCGGGGCAATAGATTGTATTTTAGGGCTTTAGCTCCTCATTCCGGGCCGATGTTGGCTTCCAATGGGATATGTGGGTGGTTGACGTTTA
ATGTGCTCGCGGACCTCTTTGTCTTTGTATCAGAGCAATGCATTCTTGTTTGTAGTAATGACAATAGCTCAATGGAATTGTAAAAAATTGTGGGTAAATAGGAGAGCAGTGTCTAATGCCCAACCCATCTCCTAGAATTTAATAAAATGAACTCTAAAATCATTCACCCAATGCACTGGGAAAATAAATCAAAGCAGTTA
AAACCAGGAGATTATATTAATGACAATAGCTCATTGGAATTGTAAAAAAAATTGTGGGTTAAATAGGAGAGCACTGTCTAATGCCCAACCCATCTCCTAGAATTTAATAAAATGAACTCTAAAATCATTCACCCAATGCACTGGGAAAATAAATCAAAGCAGTTAAAACTGTAAGTAAATATTGTAGAATCCAATGTAGG
CAAATATTGCAGGATCGAATGTAAGCAACATGGTGTAGTTTTTACTAGCCACCACATAGTAGTATCAGAAGTATTGGATATAGGATGCCCCTGGGGCAGAGTCTCAAGAATTGCATGATGATAAAGGCGTGGTTGTAAGGGAGCTTGGTGAGGTTGTCTGAATCTAGTTCTTGTAGAAGCCCAAAAATATTGTAGGTTAG
GAAAATGGATTATTTCATTTCATTTAATTATTTTAGTTTTTATCCTTCAATATGTTGTTCATTTGTTTTATTGTATTCTCATATTATATTATACTGCATGAAAACATTGTACATTGATAGAGTACATAATTTTAAAATGGTACATTGATACCCGCTCCTATGTGAAGGACTCATTTCTGTGATGCATCTATATTGGGTCC
AACGACTGTACTGTTTTGATTTCAAATGTATTTTGGAAATGGTTCAACGTCCTCTTAAAAACCTCACATTGTAAAAGCTTCTAAAAACAAGTTTGAGAGCTATCGATTGCATTTTGTATTTCCAAATACGAGTAGAGCATACTTATAGGGTGTTAGTACCTGTTGGTCTAAGTAGTGGTATATAATCCTGGATTATTGAG
AAGATAGTATGGTATTGCACTTCTTAAAGTAAGTATTTTCGGTAGTTGCAGATTTCCTGTGGTAATGGACTTCTATCTTTCTGTAAAGTGTGAGTCCGATTATTCTTTTCCTGGAACCTTGTGTCAACTGTATTGGAGTATGTGTTTTGTGGACAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAA
AAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGA
AGCTGATGAAGTTTTGGGTAAGTATTAAAAAATGTAGACCACGAATTATTTTTCCCGATTAAAAATCTTTTGTTTGCATGTAAAACAACTAATTTTATACGATGGACGGTGTACTTGTTTAATTTCTTGTCAACTAACTTTAAATAATGACAGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCA
GAGGAGGGGGTGGAGTTTCATGTAAAGGATGGTATGGTGACTTTCACATCAAATTGACACTTGTTTTTGTCATTCTTTATGTCGAGCAATGGAATTCGTGTGCTAGATTGGTTTCTCTTTTATGAATTTTGTGCGTCTCCTATTAGGATTATATCAATCTGTGACAATACTTTTGGCTCCTGATATTTGAGACTGGTTTA
TGTTCCAGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTGTAAGTTATAGGAGTTGCTGATAATAAAATGATTACGCATTCAAATTATATTCCAGCTTTTGCATCTCAGCTTTTGTCATTTATATCCCGTG
Intron 2 GTTTGCATAC ... CTTTCATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.24 | 67 | 24 | 10 |
| A2 | 30 | 35 | 16 | 14 |
| A3 | 29.94 | 62 | 31 | 22 |
| A4 | 36.42 | 48 | 37 | 18 |
| A5 | 33.33 | 18 | 13 | 5 |
| A6 | 17.53 | 40 | 11 | 6 |
| A7 | 21.07 | 163 | 53 | 34 |
| A8 | 20.92 | 155 | 60 | 22 |
| A9 | 21.54 | 153 | 64 | 20 |
| A10 | 22.22 | 161 | 72 | 20 |
>TRINITY_DN119612_c7_g1_i4 from sample A3 / Example spliced isoformCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAGTGTGAGATTTTCCTCAGA
AACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGAAGTTCATTACACGGGGAC
TCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTT
TGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTA
AAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGT
CACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTG
TGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACG
GATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTA
TATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGA
CAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTG
AAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATC
TTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCT
>TRINITY_DN119612_c7_g1_i6 from sample A3 / Example unspliced isoform:TGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGGTGAATTGTAGTTTTGTTTAGGCGTATTTGGTAGTTGTGTTTTTGCTGGTTGAGAATATCCTCGTTATCTTTTAAGAACAGTGTATTATCTTC
TCGAGATGTACAAAAAGGAAGAAGTAACCGGCAAAGCCTTTTATCCAAAATTCTAATTCCATGAAAATTATGTTATTGCTTCCTGGCAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATT
TGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGgtttgcataccatctttttttcataatggacgttccaagtgatttatatttaaataatatttctacccttattctaatgctcctgggtctttcattagGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAG
AGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGTAACGAGTTATTCTCTTTTGTTGGCATTCTTTCCTATCTCGAATACCTGGAAATTTTGACTCAAAACAAAGGTGGCATGGGAGGAACAGTTATATATCTATATATGTGTGTGTATG
GCGGCATCAATATTGAAAATTTCCTTTGAAATACCTGTATGCAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTACGGTGT
GTTGGCTTTTGGCATGTTAACAAGGTTTCGGGATTATACAATTTTCAGCTAATTTTCTTCTTATTAACTTTGCAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAA
CAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTT
GAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGC
TCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCT
Intron 3 GTGAATTGTA ... TTCCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.69 | 69.7 | 9 | 16 |
| A2 | 16.55 | 70.7 | 5 | 14 |
| A3 | 25.84 | 66 | 10 | 23 |
| A4 | 38.25 | 61.3 | 21 | 38 |
| A5 | 16.67 | 35 | 4 | 7 |
| A6 | 8.39 | 43.7 | 1 | 4 |
| A7 | 15.21 | 206.3 | 3 | 37 |
| A8 | 22.42 | 145.3 | 2 | 42 |
| A9 | 16.37 | 168.7 | 8 | 33 |
| A10 | 12.82 | 170 | 0 | 25 |
>TRINITY_DN119612_c7_g1_i4 from sample A3 / Example spliced isoformCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAGTGTGAGATTTTCCTCAGA
AACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGAAGTTCATTACACGGGGAC
TCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTT
TGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTA
AAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGT
CACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTG
TGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACG
GATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTA
TATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGA
CAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTG
AAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATC
TTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCT
>TRINITY_DN119612_c7_g1_i6 from sample A3 / Example unspliced isoform:TGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGgtgaattgtagttttgtttaggcgtatttggtagttgtgtttttgctggttgagaatatcctcgttatcttttaagaacagtgtattatcttc
tcgagatgtacaaaaaggaagaagtaaccggcaaagccttttatccaaaattctaattccatgaaaattatgttattgcttcctggcagAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATT
TGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGTTTGCATACCATCTTTTTTTCATAATGGACGTTCCAAGTGATTTATATTTAAATAATATTTCTACCCTTATTCTAATGCTCCTGGGTCTTTCATTAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAG
AGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGTAACGAGTTATTCTCTTTTGTTGGCATTCTTTCCTATCTCGAATACCTGGAAATTTTGACTCAAAACAAAGGTGGCATGGGAGGAACAGTTATATATCTATATATGTGTGTGTATG
GCGGCATCAATATTGAAAATTTCCTTTGAAATACCTGTATGCAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTACGGTGT
GTTGGCTTTTGGCATGTTAACAAGGTTTCGGGATTATACAATTTTCAGCTAATTTTCTTCTTATTAACTTTGCAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAA
CAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTT
GAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGC
TCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCT
Intron 4 GTAAGTTATA ... CCCCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.63 | 51.1 | 6.5 | 14 |
| A2 | 17.24 | 53 | 4.8 | 11 |
| A3 | 20.95 | 61.5 | 6.5 | 16 |
| A4 | 22.1 | 49.8 | 20.3 | 14 |
| A5 | 15.53 | 38.1 | 8.5 | 7 |
| A6 | 12.9 | 27.3 | 1.5 | 4 |
| A7 | 16.47 | 123.9 | 11 | 24 |
| A8 | 12.66 | 76.8 | 4.5 | 11 |
| A9 | 6.03 | 78.1 | 4.8 | 5 |
| A10 | 14.03 | 86.3 | 4.5 | 14 |
>TRINITY_DN112102_c7_g2_i8 from sample A4 / Example spliced isoformTACAGGATTAATAACCGTTACAATAATATTACTCCGATGATAACCCCAGTTAAGTCTAGTAGGTTGGTTAGAGCAAGTGCCATGATCCGCATGACCTAGAAACATCCCCACTTTTCTAGTACCTTAATAATTTTCAGTAACTCCCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTT
AGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAGTGTGAGATTTTCCTCAGAAACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAA
TGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGAAGTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCA
AGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGAT
GGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGG
TGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAA
AACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGT
TATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAA
ATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAA
GAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGTTTGTGTTTCTATCTTAGTAAGGGTCTTTTGTTTGAATCATCAATTCCATTTTTCTTGCAAATGTATTTGTTTGTTAATGCAAAGTCCCATTAGCTCTGAAAGTTGATTTTATT
TGATTTTATTTTTGTTAGCTCCTTTCGTATGGAAGAAAACTGCTTTCACCAATGAAGACATTACAAAATCCGAAAATCGCAACTTGTCCATGGCGAAGTTATGATATATGAATATGAAC
>TRINITY_DN112102_c7_g2_i11 from sample A4 / Example unspliced isoform:GTGTGAGTCCGATTATTCTTTTCCTGGAACCTTGTGTCAACTGTATTGGAGTATGTGTTTTGTGGACAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACT
TTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGGTAAGTATTAAAAAATGTAGACCACGAATTATTTTTCCCGATTAAAAATCTTTTGTTTGCATGTAAAACA
ACTAATTTTATACGATGGACGGTGTACTTGTTTAATTTCTTGTCAACTAACTTTAAATAATGACAGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGTATGGTGACTTTCACATCAAATTGACACTTGTTTTTGTCATTCTTTATGTCGAGC
AATGGAATTCGTGTGCTAGATTGGTTTCTCTTTTATGAATTTTGTGCGTCTCCTATTAGGATTATATCAATCTGTGACAATACTTTTGGCTCCTGATATTTGAGACTGGTTTATGTTCCAGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCA
GTgtaagttataggagttgctgataataaaatgattacgcattcaaattatattccagcttttgcatctcagcttttgtcatttatatcccgtgtcattcagaagtcttgttgtagtgactttcaaaaaacatggagccccttgcagATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCA
CCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGA
AGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAA
AGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACT
TGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAG
GTTTGTGTTTCTATCTTAGTAAGGGTCTTTTGTTTGAATCATCAATTCCATTTTTCTTGCAAATGTAT
Intron 5 GTACGGTGTG ... AACTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.29 | 42 | 7 | 7 |
| A2 | 14.02 | 46 | 8 | 7 |
| A3 | 25.22 | 43 | 13 | 16 |
| A4 | 31.38 | 34 | 15 | 16.1 |
| A5 | 11.76 | 15 | 3 | 1 |
| A6 | 18.42 | 62 | 11 | 17 |
| A7 | 13.49 | 109 | 23 | 11 |
| A8 | 13.38 | 123 | 14 | 24 |
| A9 | 13.02 | 147 | 11 | 33 |
| A10 | 17.09 | 97 | 17 | 23 |
>TRINITY_DN119612_c7_g1_i4 from sample A3 / Example spliced isoformCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAGTGTGAGATTTTCCTCAGA
AACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGAAGTTCATTACACGGGGAC
TCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTT
TGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTA
AAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGT
CACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTG
TGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACG
GATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTA
TATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGA
CAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTG
AAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATC
TTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCT
>TRINITY_DN119612_c7_g1_i6 from sample A3 / Example unspliced isoform:TGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGGTGAATTGTAGTTTTGTTTAGGCGTATTTGGTAGTTGTGTTTTTGCTGGTTGAGAATATCCTCGTTATCTTTTAAGAACAGTGTATTATCTTC
TCGAGATGTACAAAAAGGAAGAAGTAACCGGCAAAGCCTTTTATCCAAAATTCTAATTCCATGAAAATTATGTTATTGCTTCCTGGCAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATT
TGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGTTTGCATACCATCTTTTTTTCATAATGGACGTTCCAAGTGATTTATATTTAAATAATATTTCTACCCTTATTCTAATGCTCCTGGGTCTTTCATTAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAG
AGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGTAACGAGTTATTCTCTTTTGTTGGCATTCTTTCCTATCTCGAATACCTGGAAATTTTGACTCAAAACAAAGGTGGCATGGGAGGAACAGTTATATATCTATATATGTGTGTGTATG
GCGGCATCAATATTGAAAATTTCCTTTGAAATACCTGTATGCAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGgtacggtgt
gttggcttttggcatgttaacaaggtttcgggattatacaattttcagctaattttcttcttattaactttgcagGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAA
CAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTT
GAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGC
TCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCT
Intron 6 GTATGGTGAC ... TATGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.82 | 58.6 | 5.5 | 17.3 |
| A2 | 13.82 | 57.6 | 8.1 | 10.3 |
| A3 | 10.94 | 103.4 | 9.3 | 14 |
| A4 | 37.29 | 53.7 | 31.2 | 32.3 |
| A5 | 18.21 | 57.5 | 14.9 | 14.7 |
| A6 | 6.52 | 36.8 | 0.4 | 3 |
| A7 | 7.8 | 178.7 | 1.1 | 18.3 |
| A8 | 8.51 | 104.1 | 1.3 | 12 |
| A9 | 8.56 | 135 | 1.6 | 15.7 |
| A10 | 7.17 | 145 | 2.4 | 13.3 |
>TRINITY_DN122775_c0_g1_i3 from sample A1 / Example spliced isoformTGATAAAGGCGTGGTTGTAAGGGAGCTTGGTGAGGTTGTCTGAATCTAGTTCTTGTAGAAGCCCAAAAATATTGTAGGTTAGGAAAATGGATTATTTCATTTCATTTAATTATTTTAGTTTTTATCCTTCAATATGTTGTTCATTTGTTTTATTGTATTCTCATATTATATTATACTGCATGAAAACATTGTACATTGAT
AGAGTACATAATTTTAAAATGGTACATTGATACCCGCTCCTATGTGAAGGACTCATTTCTGTGATGCATCTATATTGGGTCCAACGACTGTACTGTTTTGATTTCAAATGTATTTTGGAAATGGTTCAACGTCCTCTTAAAAACCTCACATTGTAAAAGCTTCTAAAAACAAGTTTGAGAGCTATCGATTGCATTTTGTA
TTTCCAAATACGAGTAGAGCATACTTATAGGGTGTTAGTACCTGTTGGTCTAAGTAGTGGTATATAATCCTGGATTATTGAGAAGATAGTATGGTATTGCACTTCTTAAAGTAAGTATTTTCGGTAGTTGCAGATTTCCTGTGGTAATGGACTTCTATCTTTCTGTAAAGTGTGAGTCCGATTATTCTTTTCCTGGAACC
TTGTGTCAACTGTATTGGAGTATGTGTTTTGTGGACAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGG
CTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTGCC
AAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAAT
CCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCT
TGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTC
GGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATC
TCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAA
GAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTT
TGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGC
TGAAAAAAAA
>TRINITY_DN122775_c0_g1_i10 from sample A1 / Example unspliced isoform:TTTCATGTAAAGGATGgtatggtgactttcacatcaaattgacacttgtttttgtcattctttatgtcgagcaatggaattcgtgtgctagattggtttctcttttatgaattttgtgcgtctcctattaggattatatcaatctgtgacaatacttttggctcctgatatttgagactggtttatgttccagGGTATTT
CTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGA
AAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAG
AAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAA
TGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGG
TTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTAT
GGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAAT
CAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCT
TGGTTTTTGTTTGCGCTGAAAAAAAA
Intron 7 GTATGCAAAT ... GTTTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 44 | 22 | 1 |
| A2 | 17.24 | 48 | 10 | 0 |
| A3 | 31.37 | 35 | 16 | 0 |
| A4 | 23.33 | 23 | 7 | 0 |
| A5 | 26.32 | 14 | 5 | 0 |
| A6 | 20.65 | 123 | 32 | 0 |
| A7 | 23.89 | 137 | 43 | 0 |
| A8 | 22.13 | 190 | 54 | 1 |
| A9 | 25.99 | 131 | 46 | 0 |
| A10 | 20.39 | 121 | 31 | 0 |
>TRINITY_DN37365_c0_g1_i2 from sample A8 / Example spliced isoformCAGTTAAGTCTAGTAGGTTGGTTAGAGCAAGTGCCATGATCCGCATGACCTAGAAACATCCCCACTTTTCTAGTACCTTAATAATTTTCAGTAACTCCCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGT
TGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAGTGTGAGATTTTCCTCAGAAACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAA
ATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGAAGTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGC
AACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGA
ACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACAT
AAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTT
AGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGT
CCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGT
GAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGAT
CGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAG
GGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAAT
GGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCTGAAAAAAGTTCTCTCTGCGATGTTATAAAGTCGTTTCAACTAAAATAAAGAGTTAATTAGGATTTAAAGTT
ATTTTAATATAGTAAAAAG
>TRINITY_DN37365_c0_g1_i1 from sample A8 / Example unspliced isoform:TTTAAGGTTGATTACAAGACCTACTTATTTTTATTTAGATTGTGGATTATATGTGATGTCAGTAACTTTTGCTGAGAGTTTCCTTTATTTGACATTGAACTTGCTGGTATATTTCTGGAATGTGCCCGTCATTGTAATGTTTAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGA
AGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGgtatgcaaattctcattgtagtgtgtagttatatttcaatttgtttcacaaaaatatcttaatcaactattgctttgtcagaaatccatatcttatttaactgttgttttgtcagAAATCCGGGAGC
Intron 8 GTGAGTCTTC ... TTGTGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 45 | 15.5 | 9 |
| A2 | 18.45 | 68 | 18 | 12 |
| A3 | 24.2 | 49 | 16.5 | 13 |
| A4 | 35.73 | 57 | 32.5 | 32 |
| A5 | 24.28 | 53 | 19 | 9 |
| A6 | 17.44 | 28 | 7.5 | 2 |
| A7 | 18.25 | 79 | 22 | 10 |
| A8 | 12.72 | 41 | 7 | 5 |
| A9 | 14.64 | 70 | 14.5 | 5 |
| A10 | 18.15 | 86 | 24.5 | 2 |
>TRINITY_DN104097_c1_g1_i5 from sample A5 / Example spliced isoformATAATTTTCAGTAACTCCCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAG
TGTGAGATTTTCCTCAGAAACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGA
AGTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAA
TTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAG
GGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTG
GAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTG
ATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATA
GAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGTAACGAGTTATTCTCTTTTGTTGGCATTCTTTCCTATCTCGAATACCTGGAAATTTTGACTCAAAACAAAGGTGGCATGGGAGGAACAGTTATATATCTATATATGTGTGTGTAT
GGCGGCATCAATATTGAAAATTTCCTTTGAAATACCTGTATGCAGGCTGC
>TRINITY_DN104097_c1_g1_i7 from sample A5 / Example unspliced isoform:ATAATTTTCAGTAACTCCCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCTTCATCTCATTTTTTCAAG
TGTGAGATTTTCCTCAGAAACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGAAACCGGTGATGAAGTTGA
AGTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGgtgagtcttcttattctccctcttatttactttataatagtttctgggtccgtgccttagaatactttaaactcagatcgtcgtgcctttgaattcattaaacttaggtcgtcg
ctgcaggcatgtcgaaaaggtgatttataatctgatttttgctggtgtcatcaaataaccatacttgatatgcttgtcaaggagcacaaatggttactagcccataagtcctgtcattatggtttttacacttgcttcttaaacttggagcttagtttgcaggtcttactgaaccggggcaatagattgtattttagggc
tttagctcctcattccgggccgatgttggcttccaatgggatatgtgggtggttgacgtttaatgtgctcgcggacctctttgtctttgtatcagagcaatgcattcttgtttgtagtaatgacaatagctcaatggaattgtaaaaaattgtgggtaaataggagagcagtgtctaatgcccaacccatctcctagaat
ttaataaaatgaactctaaaatcattcacccaatgcactgggaaaataaatcaaagcagttaaaaccaggagattatattaatgacaatagctcattggaattgtaaaaaaaattgtgggttaaataggagagcactgtctaatgcccaacccatctcctagaatttaataaaatgaactctaaaatcattcacccaatg
cactgggaaaataaatcaaagcagttaaaactgtaagtaaatattgtagaatccaatgtaggcaaatattgcaggatcgaatgtaagcaacatggtgtagtttttactagccaccacatagtagtatcagaagtattggatataggatgcccctggggcagagtctcaagaattgcatgatgataaaggcgtggttgtaa
gggagcttggtgaggttgtctgaatctagttcttgtagaagcccaaaaatattgtaggttaggaaaatggattatttcatttcatttaattattttagtttttatccttcaatatgttgttcatttgttttattgtattctcatattatattatactgcatgaaaacattgtacattgatagagtacataattttaaaat
ggtacattgatacccgctcctatgtgaaggactcatttctgtgatgcatctatattgggtccaacgactgtactgttttgatttcaaatgtattttggaaatggttcaacgtcctcttaaaaacctcacattgtaaaagcttctaaaaacaagtttgagagctatcgattgcattttgtatttccaaatacgagtagagc
atacttatagggtgttagtacctgttggtctaagtagtggtatataatcctggattattgagaagatagtatggtattgcacttcttaaagtaagtattttcggtagttgcagatttcctgtggtaatggacttctatctttctgtaaagtgtgagtccgattattcttttcctggaaccttgtgtcaactgtattggag
tatgtgttttgtggacagGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGC
AAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGGTAAGTATTAAAAAATGTAGACCACGAATTATTTTTCCCGATTAAAAATCTTTTGTTTGCATGTAAAACAACTAATTTTATACGATGGACGGTGTACTTGTTTAATTTCTTGTCAACTAAC
TTTAAATAATGACAGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGTATGGTGACTTTCACATCAAATTGACACTTGTTTTTGTCATTCTTTATGTCGAGCAATGGAATTCGTGTGCTAGATTGGTTTCTCTTTTATGAATTTTGTGCGTCT
CCTATTAGGATTATATCAATCTGTGACAATACTTTTGGCTCCTGATATTTGAGACTGGTTTATGTTCCAGGGTATTTCTGTCCAGCTTTTGCCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTGTAAGTTATAGGAGTTGCTGATAATAAAATGATTACGCATTCAAATTAT
ATTCCAGCTTTTGCATCTCAGCTTTTGTCATTTATATCCCGTG
Intron 9 GTAACGAGTT ... CTGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.4 | 47 | 11.7 | 16 |
| A2 | 26.15 | 48 | 9.3 | 17 |
| A3 | 32.61 | 62 | 14.3 | 30 |
| A4 | 37.04 | 51 | 7 | 30 |
| A5 | 29.17 | 17 | 10.3 | 7 |
| A6 | 19.57 | 74 | 10.7 | 18 |
| A7 | 22.17 | 179 | 23.3 | 51 |
| A8 | 24.48 | 145 | 14 | 47 |
| A9 | 21.64 | 134 | 13.3 | 37 |
| A10 | 22.73 | 119 | 11.3 | 35 |
>TRINITY_DN122775_c0_g1_i1 from sample A1 / Example spliced isoformTACGCATTCAAATTATATTCCAGCTTTTGCATCTCAGCTTTTGTCATTTATATCCCGTGTCATTCAGAAGTCTTGTTGTAGTGACTTTCAAAAAACATGGAGCCCCTTGCAGATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGT
GTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAG
TTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAA
AAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATT
GAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGA
AACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTT
ATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTG
CTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCTGAAAAAAAA
>TRINITY_DN122775_c0_g1_i12 from sample A1 / Example unspliced isoform:GGCTTCCAAGAAATATGAGAAGgtaacgagttattctcttttgttggcattctttcctatctcgaatacctggaaattttgactcaaaacaaaggtggcatgggaggaacagttatatatctatatatgtgtgtgtatggcggcatcaatattgaaaatttcctttgaaatacctgtatgcagGCTGCAAAGTATATTGA
ATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAG
ATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACG
GAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGC
AAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGCTGAAAAAAAA
Intron 10 GTAAGTATTA ... ATAATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.31 | 37.9 | 17 | 4.6 |
| A2 | 15.11 | 51.3 | 8 | 10.1 |
| A3 | 20.67 | 53.3 | 17 | 9.5 |
| A4 | 42.46 | 41.6 | 30 | 31.3 |
| A5 | 22.15 | 34.3 | 10 | 9.5 |
| A6 | 5.66 | 28.9 | 3 | 0.4 |
| A7 | 8.82 | 103.5 | 17.3 | 2.3 |
| A8 | 9.18 | 65.8 | 12 | 1.2 |
| A9 | 9.65 | 99.4 | 19 | 2.1 |
| A10 | 4.9 | 104.7 | 9 | 1.9 |
>TRINITY_DN122775_c0_g1_i3 from sample A1 / Example spliced isoformTGATAAAGGCGTGGTTGTAAGGGAGCTTGGTGAGGTTGTCTGAATCTAGTTCTTGTAGAAGCCCAAAAATATTGTAGGTTAGGAAAATGGATTATTTCATTTCATTTAATTATTTTAGTTTTTATCCTTCAATATGTTGTTCATTTGTTTTATTGTATTCTCATATTATATTATACTGCATGAAAACATTGTACATTGAT
AGAGTACATAATTTTAAAATGGTACATTGATACCCGCTCCTATGTGAAGGACTCATTTCTGTGATGCATCTATATTGGGTCCAACGACTGTACTGTTTTGATTTCAAATGTATTTTGGAAATGGTTCAACGTCCTCTTAAAAACCTCACATTGTAAAAGCTTCTAAAAACAAGTTTGAGAGCTATCGATTGCATTTTGTA
TTTCCAAATACGAGTAGAGCATACTTATAGGGTGTTAGTACCTGTTGGTCTAAGTAGTGGTATATAATCCTGGATTATTGAGAAGATAGTATGGTATTGCACTTCTTAAAGTAAGTATTTTCGGTAGTTGCAGATTTCCTGTGGTAATGGACTTCTATCTTTCTGTAAAGTGTGAGTCCGATTATTCTTTTCCTGGAACC
TTGTGTCAACTGTATTGGAGTATGTGTTTTGTGGACAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAATCAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGG
CTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTGCC
AAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAAAT
CCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTCCT
TGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGGTC
GGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAATC
TCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGCAA
GAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAGTT
TGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGCGC
TGAAAAAAAA
>TRINITY_DN122775_c0_g1_i9 from sample A1 / Example unspliced isoform:CACTTTTCTAGTACCTTAATAATTTTCAGTAACTCCCTCTTTCTTCACATTTTCTCACGGGAGGAAGCATCTAGAATTCTTGGAATCGCTTTAGGCATATATAAAATCATCCCCTTCCCCCTTTACTTTAGTGTTGGTTGTCTGCAAAGAATTCAGACTGTCGAAGTGCTCTTCTGCTTTGATTCTGATTTTGATTATCT
TCATCTCATTTTTTCAAGTGTGAGATTTTCCTCAGAAACGCTGCGATGGCGGAAGATTTTGAACTTCCCGAGAGCGCCGGAATGATGGAAAATGATGACTTTAGTGAAACCGTTTTCAAGGTTGGTGAAGAGAAAGAAATTGGTAAGCAGGGGTTGAAGAAATTGCTGGTTAAAGAAGGAGAAGGCTGGGAAACACCTGA
AACCGGTGATGAAGTTGAAGTTCATTACACGGGGACTCTTCTGGACGGTACAAAGTTCGACTCTAGTCGTGATAGAGCTCCATTCAAATTCAAGCTTGGTCAAGGTCAAGTGATCAAAGGATGGGACCAGGGGATTGCAACGATGAAAAAGGGGGAAAATGCTGTTTTCACCATTCCCCCCGATATGGCATATGGAGAAT
CAGGGTCGCCACCCACAATTCCTCCTAATGCGACTTTGAAATTCGATGTTGAATTGCTTTCTTGGGCTAGTGTAAAAGATATCTGCAAGGATGGAGGCATTTTTAAGAAAATTATCAAGGAGGGGGAGAAATGGGAGAACCCGAAAGAAGCTGATGAAGTTTTGGgtaagtattaaaaaatgtagaccacgaattatttt
tcccgattaaaaatcttttgtttgcatgtaaaacaactaattttatacgatggacggtgtacttgtttaatttcttgtcaactaactttaaataatgacagTTAAATATGAGGCCAGACTGGAGGATGGAACTGTTGTGTCCAAATCAGAGGAGGGGGTGGAGTTTCATGTAAAGGATGGGTATTTCTGTCCAGCTTTTG
CCAAAGCAGTTAAAACAATGAAAAGGGGTGAAAAAGTCTTATTAACAGTGAAGCCTCAGTATGGTTTTGGACATAAAGGCCGCGAAGCAATTGGAAACGATGTGGCCGTTCCACCAAATGCAACGTTGATGGTGGATCTTGAGCTTGTGTCTTGGAAGGTTGTCGATGAAGTCACTGATGATAAGAAAGTGTTGAAGAAA
ATCCTGAAGCAAGGAGAAGGCTATGAAAAACCTAATGATGGGGCAGTTGTGAAAGTTAAATACACGGGCAAGTTAGAGGATGGTACTGTTTTCGAGGAAAAAGGATCTGACGAAGAGCCATTTGAATTTATGACTGGAGAAGAGCAAGTTGTTGATGGACTAGATAGAGCGGTTATGACAATGAAGAAAGGAGAAGTTTC
CTTGGTGACTGTAGCACCTGAATATGGTTATGAAACTGAGATTAAGACGGATTTGGCAGTTGTTCCAGCGAAGTCCTCTCTGATTTATGAAGTTGAGCTGGTTTCATTTGTAAAGGAGAAAGAGTCATGGGACATGGACACAGCTGAAAAGATAGAGGCAGCTGGGAAGAAGAAAGAAGAAGGGAATGCATTATTCAAGG
TCGGCAAGTATTTTAGGGCTTCCAAGAAATATGAGAAGGCTGCAAAGTATATTGAATATGACACATCATTCAGTGAGGAAGAGAAGAAGCAATCTAAGCCTTTAAAGGTCACTTGTAATCTGAACAATGCAGCTTGTAAACTCAAATTGAAAGATTACACTCAGGCAGAAAAATTATGTACAAAGGTTTTGGAATTTGAA
TCTCAAAATGTGAAGGCTTTATACAGAAGAGCACAGGCGTACATTCAGACAGCAGATTTGGAGCTAGCAGAGATCGACATAAAGAAAGCACTTGAGATTGATCCAAACAACAGGGATGTGAAGCTGGAGTACAAGGCTCTTAAGGAGAAACAAAAGGAGTACAATAAGAAGGAAGCCAAATTCTATGGCAACATGTTTGC
AAGAATGAGCAGGTTGGAGGAATTAGAAAGCAAGAAATCCGGGAGCCTGAAAACGGAGACTGTTGATAAAGAAGGGTCTGATGCCATGGCTGTAGATGGCGAGTCTTCTTGAAACATTTTTGCAAGCTCATAGCCATGGATATATTTTATGCAGTCCTATGAGTCCGTCTTTTAATTCGTCATAATCAAAGCATGTTAAG
TTTGGTGTATGCTTTTTTAACTCTGCTAGGTTGATCTATTTGAAGGATCTTTTGCAAGATCCTGCTGCATTAATGGCACAATTGTAAGAGGGAGGGTCAGGCTGAATTGCTCTTAACTGATAAAAGAGGATGTATTTTTGAAGTATTGCTGTGGTCTAATCCAATCGATTTAGATAATAAAGGTCTTGGTTTTTGTTTGC
GCTGAAAAAAAA