sp|Q0JM17|RH56_ORYSJ ----> DEAD-box ATP-dependent RNA helicase 56
Intron 1 GTTCGTGCAT ... TTCTTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.1 | 86 | 27 | 19 |
| A2 | 21.74 | 45 | 15 | 10 |
| A3 | 17.99 | 57 | 14 | 11 |
| A4 | 15.91 | 37 | 7 | 7 |
| A5 | 23.81 | 32 | 13 | 7 |
| A6 | 20 | 36 | 12 | 6 |
| A7 | 22.12 | 81 | 37 | 9 |
| A8 | 15.86 | 61 | 18 | 5 |
| A9 | 19.1 | 108 | 20 | 31 |
| A10 | 20.83 | 95 | 30 | 20 |
>TRINITY_DN111660_c0_g1_i9 from sample A2 / Example spliced isoformTTCTCACTAGCGTCATTCAATTCCCCTTTTGGAATAAGAGCTACAGAGTCCAAACGTCTTTGTTGTCAGCGAGGAGTTCGAGGTCAGAGAGGTGAACGATAAAGACCGAGCGGGACGGAAGTGACCTTCGATCGAAACGAGCGCGGGGTTTCTTCTACCTATTGCACAGATCTGCTATCCCCGTTCTTTTGGTGTTAGTA
TATTTCAATTTTTCTTCACGGCGTCGGCCTCCGTTCTTTGCAGGGTTCTCAAACCCTAACTCCGACATCCAAACCAGATTCTCTGACAAATACCATATTAAGTCAAAAGATGGTGGAAAAGAAGGACAATGCTACGTATCAGGAGGAGCTTCCAGACTATGAAGAGGAGGAAACTGCCCCGAATCATTTTGCTTCGAAGG
GAGCGACTGATGAAGTCAAGAAGTTAGGGTATGACAACATTCACAGTTCGGGATTCAGAGACTTCTTATTGGAACCAGAACTTCATCGGTCTGGATTTGAGCATCCTTCAGAAGGTAGAAGACTTAATTGTTATTTGAGACCTGAGTGGCTTTGTATTTTCTTTTTCCCTTCCGTTTAACTTTCTTTGAATGTGACTTTA
GATGGCTAGAGGAGATGGATTTTTCCTAATGTAGTGCTTAAACTCGTTTATGTTTCTATTTCTTTTTTTTTAATGATGTATCTAAGTTGAATTGATATTCTTGACAATTTGAAGTGTGAATTTCTC
>TRINITY_DN111660_c0_g1_i4 from sample A2 / Example unspliced isoform:TTCTCACTAGCGTCATTCAATTCCCCTTTTGGAATAAGAGCTACAGAGTCCAAACGTCTTTGTTGTCAGCGAGGAGTTCGAGGTCAGAGAGGTGAACGATAAAGACCGAGCGGGACGGAAGTGACCTTCGATCGAAACGAGCGCGGGGTTTCTTCTACCTATTGCACAGATCTGCTATCCCCGTTCTTTTGGTGTTAGTA
TATTTCAATTTTTCTTCACGGCGTCGGCCTCCGTTCTTTGCAGGGTTCTCAAACCCTAACTCCGACATCCAAACCAGATTCTCTGACAAATACCATgttcgtgcattgctatgtttgaaacaccatgttcatgcatcgctttgtttactctctttataatatcttcgtcggattttatgacttcgacgaggtacaagggt
ttgtacgagctctttgaataacacggatgctattttcttagcagATTAAGTCAAAAGATTGTGGAAAAGAAGGACAATGCTAAGTATCATGAGGATCTTCCAGACTATGAAGAGGAGGAAACTGCCCCGAATCATTTTGCTTCGAAGGGAGCGACTGATGAAGTCAAGAAGTTAGGGTATGACAACATTCACAGTTCGGG
ATTCAGAGACTTCTTATTGGAACCAGAACTTCATCGGTCTGGATTTGAGCATCCTTCAGAAGCACGAAAGGCTCGCATAAATGCTGTCTGGGAGCAGTTGAATTGTAATGGATCCTCTAAGACGCCCAGTGCCATTCCTAAAAGCTACAAGGCACCAAGGGACAAGCCCAAGCTCCAAAGACATGTACCTGAATGGATGG
TAAGTCTTGGCATAGCATCGAAGAAACCCTCAATGGTGAATTCGAATATTGATGGTACCCAAGCTTTAAATGATGGATTGGCATCAAAGAGGCACCAAGAAGTTGGCACAAAAAGTATTGAAGCAAGTGAAGAGGCAAAAAAAATTGCGGCTGCGGCTTTGGCAGCAGTGAAAGATGCTACTGCAGTAAACAAAGGGGGA
AAGATAGAGGTCAATGAAGTCCGTAATTTTGCTGGGGAAGAAGTGAAGCTAAGAAAATTTGTAGATCCTAATTCTATGGAAGCTCAGATTGCGCAGGAAAGAACAAAGATGCAAGCCTCATCAAGTTCTAGTTTGGATGCATTACTTGAACAAATAAGTAAAAAGCCAAAGCTTAACATACTGGACAAATCGAAAAAGGA
CTGGGGTGACTTCAAAGAAAAAGAGGGTTTAGAAAATGAGCTGGATGCCTACAAGAAAAGTAGTGACAAATATCTGGATAAAGTTTCTTTCCTTCAGAGAGCTGATCAACGGGAGTATGAAAGAGAGAGAGAGGTTCGCTTGGCTCAACTGTCAAAGAGACGGGCGGATTCTCAAAGAGATTAGCCTAAAAAAGTATTAA
AAATATATACCAGGATTATTTCCTGCCAGCTCTGGCACGTTACTGGAGGAGAAGCTATGGTGAGAAAGAAAATGGTGAGAAAGAATAATATATTCTTGTGAGGTTGTTTTGTGATAAGCCTTATGGGAGCTCTTTTATAAGTCCAGGAAAATATTTCCTGCTTGTTGGCTGCATTTCATTATACCAATATATTTTCTGCA
GGACCTTTCCATGAACTATTTACTTGAAGAACCACTGTTTCATGGATCCGGGATTTGTACTTTGGCTCCCATCCT
Intron 2 GTGAGAAAGA ... TTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.67 | 9 | 42 | 38.5 |
| A2 | 70.97 | 19 | 57 | 36 |
| A3 | 82.37 | 8 | 35 | 40 |
| A4 | 81.09 | 6 | 32 | 19.5 |
| A5 | 56.47 | 8 | 12 | 9 |
| A6 | 67.28 | 106 | 220 | 218 |
| A7 | 66.57 | 100 | 223 | 177 |
| A8 | 66.92 | 131 | 287 | 246 |
| A9 | 65.8 | 93 | 191 | 169 |
| A10 | 69.91 | 48 | 118 | 106 |
>TRINITY_DN111660_c0_g1_i6 from sample A2 / Example spliced isoformTTCTCACTAGCGTCATTCAATTCCCCTTTTGGAATAAGAGCTACAGAGTCCAAACGTCTTTGTTGTCAGCGAGGAGTTCGAGGTCAGAGAGGTGAACGATAAAGACCGAGCGGGACGGAAGTGACCTTCGATCGAAACGAGCGCGGGGTTTCTTCTACCTATTGCACAGATCTGCTATCCCCGTTCTTTTGGTGTTAGTA
TATTTCAATTTTTCTTCACGGCGTCGGCCTCCGTTCTTTGCAGGGTTCTCAAACCCTAACTCCGACATCCAAACCAGATTCTCTGACAAATACCATATTAAGTCAAAAGATGGTGGAAAAGAAGGACAATGCTACGTATCAGGAGGAGCTTCCAGACTATGAAGAGGAGGAAACTGCCCCGAATCATTTTGCTTCGAAGG
GAGCGACTGATGAAGTCAAGAAGTTAGGGTATGACAACATTCACAGTTCGGGATTCAGAGACTTCTTATTGGAACCAGAACTTCATCGGTCTGGATTTGAGCATCCTTCAGAAGGAAGCAAAAAGAGAGCAAAAGATGAGGTTTTATTTGCAGAAGCTGTTCAGAGTGAGGAGGAACCTGTAGATCCATTGTCACAAGTT
AAAGCAAATGCACGAAAGGCTCGCATAAATGCTGTCTGGGAGCAGTTGAATTGTAATGGATCCTCTAAGACGCCCAGTGCCATTCCTAAAAGCTACAAGGCACCAAGGGACAAGCCCAAGCTCCAAAGACATGTACCTGAATGGATGGTAAGTCTTGGCATAGCATCGAAGAAACCCTCAATGGTGAATTCGAATATTGA
TGGTACCCAAGCTTTAAATGATGGATTGGCATCAAAGAGGCACCAAGAAGTTGGCACAAAAAGTATTGAAGCAAGTGAAGAGGCAAAAAAAATTGCGGCTGCGGCTTTGGCAGCAGTGAAAGATGCTACTGCAGTAAACAAAGGGGGAAAGATAGAGGTCAATGAAGTCCGTAATTTTGCTGGGGAAGAAGTGAAGCTAA
GAAAATTTGTAGATCCTAATTCTATGGAAGCTCAGATTGCGCAGGAAAGAACAAAGATGCAAGCCTCATCAAGTTCTAGTTTGGATGCATTACTTGAACAAATAAGTAAAAAGCCAAAGCTTAACATACTGGACAAATCGAAAAAGGACTGGGGTGACTTCAAAGAAAAAGAGGGTTTAGAAAATGAGCTGGATGCCTAC
AAGAAAAGTAGTGACAAATATCTGGATAAAGTTTCTTTCCTTCAGAGAGCTGATCAACGGGAGTATGAAAGAGAGAGAGAGGTTCGCTTGGCTCAACTGTCAAAGAGACGGGCGGATTCTCAAAGAGATTAGCCTAAAAAAGTATTAAAAATATATACCAGGATTATTTCCTGCCAGCTCTGGCACGTTACTGGAGGAGA
AGCTATGGTGAGAAAGAAAATGGACCTTTCCATGAACTATTTACTTGAAGAACCACTGTTTCATGGATCCGGGATTTGTACTTTGGCTCCCATCCTTCTTAGGTGCCACTTGAAGAATGAGTATGGATTATCAGAAAATGTACAAGCGATTTATTATTGATGTTCTACAATTTCTCAGTATTCTTCATGGTCAGAGAAAT
GCAAGTATTTTTTATATTATCAAATTGAAATATATAGTTGTCCCTTTGTTATATTGTTCTGAAAGTGTCCTGATCAATGTAACGATGCATTCTATGGCCTTTATTGACATTTGTTAATTACAGTCATAATGCACACACTAAGGCCTTTATTGACATTTGTTAGTTTTAACCTGTAAGCCATAACGATTTTGGAGAATAA
>TRINITY_DN111660_c0_g1_i4 from sample A2 / Example unspliced isoform:TTCTCACTAGCGTCATTCAATTCCCCTTTTGGAATAAGAGCTACAGAGTCCAAACGTCTTTGTTGTCAGCGAGGAGTTCGAGGTCAGAGAGGTGAACGATAAAGACCGAGCGGGACGGAAGTGACCTTCGATCGAAACGAGCGCGGGGTTTCTTCTACCTATTGCACAGATCTGCTATCCCCGTTCTTTTGGTGTTAGTA
TATTTCAATTTTTCTTCACGGCGTCGGCCTCCGTTCTTTGCAGGGTTCTCAAACCCTAACTCCGACATCCAAACCAGATTCTCTGACAAATACCATGTTCGTGCATTGCTATGTTTGAAACACCATGTTCATGCATCGCTTTGTTTACTCTCTTTATAATATCTTCGTCGGATTTTATGACTTCGACGAGGTACAAGGGT
TTGTACGAGCTCTTTGAATAACACGGATGCTATTTTCTTAGCAGATTAAGTCAAAAGATTGTGGAAAAGAAGGACAATGCTAAGTATCATGAGGATCTTCCAGACTATGAAGAGGAGGAAACTGCCCCGAATCATTTTGCTTCGAAGGGAGCGACTGATGAAGTCAAGAAGTTAGGGTATGACAACATTCACAGTTCGGG
ATTCAGAGACTTCTTATTGGAACCAGAACTTCATCGGTCTGGATTTGAGCATCCTTCAGAAGCACGAAAGGCTCGCATAAATGCTGTCTGGGAGCAGTTGAATTGTAATGGATCCTCTAAGACGCCCAGTGCCATTCCTAAAAGCTACAAGGCACCAAGGGACAAGCCCAAGCTCCAAAGACATGTACCTGAATGGATGG
TAAGTCTTGGCATAGCATCGAAGAAACCCTCAATGGTGAATTCGAATATTGATGGTACCCAAGCTTTAAATGATGGATTGGCATCAAAGAGGCACCAAGAAGTTGGCACAAAAAGTATTGAAGCAAGTGAAGAGGCAAAAAAAATTGCGGCTGCGGCTTTGGCAGCAGTGAAAGATGCTACTGCAGTAAACAAAGGGGGA
AAGATAGAGGTCAATGAAGTCCGTAATTTTGCTGGGGAAGAAGTGAAGCTAAGAAAATTTGTAGATCCTAATTCTATGGAAGCTCAGATTGCGCAGGAAAGAACAAAGATGCAAGCCTCATCAAGTTCTAGTTTGGATGCATTACTTGAACAAATAAGTAAAAAGCCAAAGCTTAACATACTGGACAAATCGAAAAAGGA
CTGGGGTGACTTCAAAGAAAAAGAGGGTTTAGAAAATGAGCTGGATGCCTACAAGAAAAGTAGTGACAAATATCTGGATAAAGTTTCTTTCCTTCAGAGAGCTGATCAACGGGAGTATGAAAGAGAGAGAGAGGTTCGCTTGGCTCAACTGTCAAAGAGACGGGCGGATTCTCAAAGAGATTAGCCTAAAAAAGTATTAA
AAATATATACCAGGATTATTTCCTGCCAGCTCTGGCACGTTACTGGAGGAGAAGCTATGGTGAGAAAGAAAATGgtgagaaagaataatatattcttgtgaggttgttttgtgataagccttatgggagctcttttataagtccaggaaaatatttcctgcttgttggctgcatttcattataccaatatattttctgca
gGACCTTTCCATGAACTATTTACTTGAAGAACCACTGTTTCATGGATCCGGGATTTGTACTTTGGCTCCCATCCT