sp|P28769|TCPA_ARATH ----> T-complex protein 1 subunit alpha
Intron 1 GTGAGTCTTG ... CTGGTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.96 | 263.7 | 109 | 4 |
| A2 | 31.4 | 271.7 | 120 | 3 |
| A3 | 31.51 | 279.7 | 125 | 5 |
| A4 | 33.17 | 245 | 119 | 0 |
| A5 | 28.81 | 160.3 | 63 | 5 |
| A6 | 23.44 | 318.3 | 93 | 0 |
| A7 | 24.99 | 631 | 202 | 0 |
| A8 | 28.83 | 290 | 113 | 0 |
| A9 | 28.82 | 582.3 | 227 | 0 |
| A10 | 27.79 | 615 | 228 | 0 |
>TRINITY_DN107713_c0_g4_i2 from sample A3 / Example spliced isoformATAGCTTTTTCTGAAAACCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATTTTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCTGCACAT
TTTTCGCACCCTGAAGCACGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACGGCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGAGATGTC
ACAATCACCAACGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGG
TGGCTACAGACTTGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTCAGTTTATGATTAGAGTTTTGATGATGGCCTGTAAGGTTAAGTGGTTGCTTGATAGATCTCATGCTTTTT
>TRINITY_DN107713_c0_g4_i5 from sample A3 / Example unspliced isoform:ATAGCTTTTTCTGAAAACCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATTTTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCTGCACAT
TTTTCGCACCCTGAAGCACGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACGGCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGAGATGTC
ACAATCACCAACGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGG
TGGCTACAGAgtgagtcttgtgattagctgcattcttattcacatgatgcaaaatccttcttgtggatggtattatgggcagctaataggcatagcttatgagaagtatattatactttttcagataattttaaatcttgtttataagttttatttttaaacaatcaatattgaattgtatttgatttctggtaacagCT
TGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTCAGTTTATGATTAGAGTTTTGATGATGGCCTGTAAGGTTAAGTGGTTGCTTGATAGATCTCATGCTTTTT
Intron 2 GTAAGTAAAG ... GATGAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.46 | 593 | 78.5 | 43 |
| A2 | 9.44 | 593 | 69 | 57.5 |
| A3 | 8.85 | 609 | 65.5 | 55.5 |
| A4 | 11.25 | 427 | 62 | 35 |
| A5 | 11.95 | 206 | 32 | 20.5 |
| A6 | 8.86 | 1417 | 152.5 | 134 |
| A7 | 8.88 | 2101 | 227 | 170.5 |
| A8 | 9.29 | 1881 | 214.5 | 187.5 |
| A9 | 8.95 | 2015 | 219.5 | 182 |
| A10 | 9.65 | 1661 | 198.5 | 147 |
>TRINITY_DN44725_c0_g3_i2 from sample A8 / Example spliced isoformAAAATCTCTCCCTTGAGTTAGCAAAGGCCAAGGCTAGCAAACCTAGTCCCCACCTAACGTTAATATGGTTTATTAAAACTCGAAAAGCATCCATCTCATGAAAAATTCTACACAAAATAGCTTTTTCTGAAAACCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATT
TTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCTGCACATTTTTCGCACCCTGAAGCACGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACG
GCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGAGATGTCACAATCACCAACGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAA
TTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGGTGGCTACAGACTTGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTTGAGAAGCTTGGCAAGGATTC
TCTCGTAAATTGTGCAAAGACGAGTATGTCGTCAAAAATCATTGGTACCGAGAACGACTTTTTTGCAAAAATGGTCGTGGATGCTGTTCAGGCTGTCAAAACTACTAACAACAAGGGCGAAATAAAATATCCAATCAAGGGCATCAATATTTTGAAGGCACATGGGCAAAGTTTAAAAGATAGTTATCTTTTGAACGGGT
ATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCAGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAAATGGGAGTGCAGGTTCTTGTGAGTGATCCAAGGGAGCTAGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAA
GCTGGTGCGAATGTCATATTAACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTGCGTCGTGTACGCAAGGAAGATTTGCGTCATGTTGCCAAGGCGACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATTCATCATTCCTTGGTTA
TGCGGATGAGGTTGTAGAGGAGCGCATTGCTGATGATGATGCCATTCTGATCAAAGGAGCAAAGAGTTCAAGAGCGGTTTCCATAATATTAAGAGGTGCTAATGATTACATGCTGGATGAGATGGAACGGTCTATGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGGTAGTTGCTGGTGGTGGTG
CTGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTGCAGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTCGCCGTGAATGCTGCAAAAGATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACAAA
AAACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAACCAGCCATGAGCAAAGTTAAAATTATACAGTTTGCAACTGAGGCTGCTATAACAATTTTGCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAGGA
GTCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGATTTTGTGAGACATCAGAAGCCGAGTTTACTGCACGAATTTTCCTCTTAAATTTCTTATAGCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGAAA
TCTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTGAGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTTTCGAAATTAATGGTAGGGATCATTTGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATTGC
AAATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTTTGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAGCAATTATTGTCAGGATTTATCTAATGGCCTTTTTTGAATTTTTCAAAAGTTGAATTTCTTTGTGCTTGCCTTTTAGTTTTCACTGCATCA
GGAAAGGTTTATTTATATGGGTGTTTTCCTATTCCTATTACATTTAAAATGATATTGGACCGCTTGCAGA
>TRINITY_DN44725_c0_g3_i1 from sample A8 / Example unspliced isoform:AAGAGTTCAAGAGCGgtaagtaaagctgtttctgctcttaagcattgaagttgtaattctgcactggaaagagcagccatctgcttggatcttgccttcctactggggttgtgagaaggagattttagaagtagtgctgactatattcaatcaggtagcttggaattgcccaaagatcactgtttttgtgtgatgaatca
gGTTTCCATAATATTAAGAGGTGCTAATGATTACATGCTGGATGAGATGGAACGGTCTATGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGGTAGTTGCTGGTGGTGGTGCTGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTG
CAGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTCGCCGTGAATGCTGCAAAAGATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACAAAAAACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAA
CCAGCCATGAGCAAAGTTAAAATTATACAGTTTGCAACTGAGGCTGCTATAACAATTTTGCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAGGAGTCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGA
TTTTGTGAGACATCAGAAGCCGAGTTTACTGCACGAATTTTCCTCTTAAATTTCTTATAGCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGAAATCTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTG
AGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTTTCGAAATTAATGGTAGGGATCATTTGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATTGCAAATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTT
TGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAGCAATTATTGTCAGGATTTATCTAATGGCCTTTTTTGAATTTTTCAAAAGTTGAATTTCTTTGTGCTTGCCTTTTAGTTTTCACTGCATCAGGAAAGGTTTATTTATATGGGTGTTTTCCTATTCCTATTACATTTAAAATGATATTGGACCGCTTGCAGA
Intron 3 GTGTTTACTG ... GTGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.35 | 520 | 0 | 18 |
| A2 | 3.09 | 439 | 3 | 14 |
| A3 | 1.24 | 476 | 0 | 6 |
| A4 | 0.78 | 512 | 0 | 4 |
| A5 | 2.94 | 264 | 0 | 8 |
| A6 | 3.49 | 387 | 0 | 14 |
| A7 | 2.62 | 856 | 0 | 23 |
| A8 | 3.21 | 362 | 0 | 12 |
| A9 | 1.72 | 799 | 0 | 14 |
| A10 | 3.13 | 774 | 0 | 25 |
>TRINITY_DN119012_c1_g1_i4 from sample A2 / Example spliced isoformCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATTTTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCTGCACATTTTTCGCACCCTGAAGCA
CGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACGGCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGAGATGTCACAATCACCAACGATGGA
GCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGGTGGCTACAGACTTGCAAT
GAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTTGAGAAGCTTGGCAAGGATTCTCTCGTAAATTGTGCAAAGACGAGTATGTCGTCAAAAATCATTGGTACCGAGAACGACTTTTTTGCAAAAATGGTCGTGGATGCTGTTCAGGCTGTCAAAACTACTAACAACAAGGGCGAAATAAAATATCCAA
TCAAGGGCATCAATATTTTGAAGGCACATGGGCAAAGTTTAAAAGATAGTTATCTTTTGAACGGGTATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCAGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAAATGGGAGTGCAGGTTCTTGTGAGTGATCCAAGG
GAGCTAGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAAGCTGGTGCGAATGTCATATTAACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTGCGTCGTGTACGCAAGGAAGATTTGCGTCATGTTGCCAAGGCGACTGGTGC
TACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATTCATCATTCCTTGGTTATGCGGATGAGGTTGTAGAGGAGCGCATTGCTGATGATGATGCCATTCTGATCAAAGGAGCAAAGAGTTCAAGAGCGGTTTCCATAATATTAAGAGGTGCTAATGATTACATGCTGGATGAGATGGAACGGTCTA
TGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGGTAGTTGCTGGTGGTGGTGCTGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTGCAGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTTGCCGTGAATGCTGCAAAA
GATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACAAAAAACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAACCAGCCATGAGCAAAGTTAAAATTATACAGTTTGCAACTGAGGCTGCTATAACAATTTT
GCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAGGAGTCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGATTTTGTGAGACATCAGAAGCCGAGTTTACTGCACGAATTTTCCTCTTAAATTTCTTATA
GCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGAAATCTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTGAGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTTTCGAAATTAATGGTAGGGATCATT
TGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATTGCAAATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTTTGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAGCAATTATTGTCAGGATTTATCTAA
TGGCCTTTTTTGAATTTTTCAAAAGTTGAATTTCTTTGTGCTTGCCTTTTAGTTTTCACTGCATCAGGAAAGGTTTATTTAT
>TRINITY_DN119012_c1_g1_i3 from sample A2 / Example unspliced isoform:CTGCAGAGCTACTCAAGgtgtttactgaatatcaaagctgttatttatatagtattattctgctttatgtgattttgcaagctttttttactctagtccttttgattatttgatctcaatcttcttgatgaatatgcattagaatctgttgttgatatggtgtagcaatgtgtaactagtatcctttttgacaaactttg
gagctttttgtgcttgcagCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGGTGGCTACAGACTTGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTCAGTTTATGATTAGAGTTTTGATGATGGCCTGTAAGGTTAAGTGGTTGCTTGATAGATCTCATGCTTT
TTTATTAGTTGCAATGGGTAGTGCAAATGGATTTTCAGTCCATGTATTACACCATTTGCCTGAGGAACTTGCATTCAATATTTTTGGTTTTGATAATTCCAAGCAAGATTTGCTATGCAAGCTTATTTGTAATGTAATTACTAATTAGAAGTCTAATTCTAGCATGCTGCATCACTTTGATGGTATGGCTCTTTGCTCAA
TGTTTATTTGTTAAAGTACAAGGATGATTTTGAATCTGAGTATGTGAATTTGTATAA
Intron 4 GTATGCAAGC ... TGATATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.35 | 557 | 111 | 91 |
| A2 | 15.18 | 556 | 112 | 87 |
| A3 | 17.17 | 557 | 134 | 97 |
| A4 | 16.24 | 428 | 105 | 61 |
| A5 | 13.39 | 236 | 43 | 30 |
| A6 | 13.98 | 1710 | 257 | 299 |
| A7 | 12.82 | 2479 | 345 | 384 |
| A8 | 14.61 | 2083 | 357 | 356 |
| A9 | 15 | 1997 | 381 | 324 |
| A10 | 14.19 | 1654 | 303 | 244 |
>TRINITY_DN100275_c1_g2_i5 from sample A4 / Example spliced isoformCTTTTTCTGAAAACCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATTTTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCTGCACATTTTT
CGCACCCTGAAGCACGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACGGCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGAGATGTCACAA
TCACCAACGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGGTGGC
TACAGACTTGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTTGAGAAGCTTGGCAAGGATTCTCTCGTAAATTGTGCAAAGACGAGTATGTCGTCAAAAATCATTGGTACCGAGAACGACTTTTTTGCAAAAATGGTCGTGGATGCTGTTCAGGCTGTCAAAACTACTAACAACAAGGGCGA
AATAAAATATCCAATCAAGGGCATCAATATTTTGAAGGCACATGGGCAAAGTTTAAAAGATAGTTATCTTTTGAACGGGTATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCAGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAAATGGGAGTGCAGGTTCTTG
TGAGTGATCCAAGGGAGCTAGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAAGCTGGTGCGAATGTCATATTAACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTGCGTCGTGTACGCAAGGAAGATTTGCGTCATGTTGCC
AAGGCGACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATTCATCATTCCTTGGTTATGCGGATGAGGTTGTAGAGGAGCGCATTGCTGATGATGATGCCATTCTGATCAAAGGAGCAAAGAGTTCAAGAGCGGTTTCCATAATATTAAGAGGTGCTAATGATTACATGCTGGATGA
GATGGAACGGTCTATGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGGTAGTTGCTGGTGGTGGTGCTGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTGCAGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTTGCCG
TGAATGCTGCAAAAGATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACAAAAAACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAACCAGCCATGAGCAAAGTTAAAATTATACAGTTTGCAACTGAGGCT
GCTATAACAATTTTGCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAGGAGTCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGATTTTGTGAGACATCAGAAGCCGAGTTTACTGCACGAATTTTCCTC
TTAAATTTCTTATAGCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGAAATCTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTGAGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTTTCGAAATTAA
TGGTAGGGATCATTTGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATTGCAAATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTTTGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAGCAATTATTGT
CAGGATTTATCTAATGGCCTTTTTTGAATTTTTCAAAAGTTGAATTTCTTTGTGCTTGCCTTTTAGTTTTCACTGCATCAGGG
>TRINITY_DN100275_c1_g2_i2 from sample A4 / Example unspliced isoform:CTTTTTCTGAAAACCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATTTTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCTGCACATTTTT
CGCACCCTGAAGCACGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACGGCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGAGATGTCACAA
TCACCAACGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTATCATCGGTGGC
TACAGACTTGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTTGAGAAGCTTGGCAAGGATTCTCTCGTAAATTGTGCAAAGACGAGTATGTCGTCAAAAATCATTGGTACCGAGAACGACTTTTTTGCAAAAATGGTCGTGGATGCTGTTCAGGCTGTCAAAACTACTAACAACAAGGGCGA
AATAAAATATCCAATCAAGGGCATCAATATTTTGAAGGCACATGGGCAAAGTTTAAAAGATAGTTATCTTTTGAACGGGTATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCAGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAAATGGGAGTGCAGGTTCTTG
TGAGTGATCCAAGGGAGCTAGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAAGCTGGTGCGAATGTCATATTAACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTGCGTCGTGTACGCAAGGAAGATTTGCGTCATGTTGCC
AAGGCGACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATTCATCATTCCTTGGTTATGCGGATGAGGTTGTAGAGGAGCGCATTGCTGATGATGATGCCATTCTGATCAAAGGAGCAAAGAGTTCAAGAGCGGTTTCCATAATATTAAGAGGTGCTAATGATTACATGCTGGATGA
GATGGAACGGTCTATGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGgtatgcaagcatatatagagttttgtgttattggtttgcttggattgtattttcataattgacttcatggtgcctgtttcttcttttgcctaaaatttcatcatttagctgatatacagGTAGTTGCTGGTGGTGGTGC
TGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTGCAGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTTGCCGTGAATGCTGCAAAAGATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACAAAA
AACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAACCAGCCATGAGCAAAGTTAAAATTATACAGTTTGCAACTGAGGCTGCTATAACAATTTTGCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAGGAG
TCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGATTTTGTGAGACATCAGAAGCCGAGTTTACTGCACGAATTTTCCTCTTAAATTTCTTATAGCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGAAAT
CTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTGAGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTTTCGAAATTAATGGTAGGGATCATTTGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATTGCA
AATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTTTGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAGCAATTATTGTCAGGATTTATCTAATGGCCTTTTTTGAATTTTTCAAAAGTTGAATTTCTTTGTGCTTGCCTTTTAGTTTTCACTGCATCAG
GG
Intron 5 GTAATAGGCA ... TGTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.42 | 622 | 96.2 | 212 |
| A2 | 27.32 | 548 | 82.1 | 206 |
| A3 | 28.65 | 687.4 | 98.1 | 276 |
| A4 | 25.76 | 461 | 75.9 | 160 |
| A5 | 32.3 | 262 | 26.5 | 125 |
| A6 | 31.01 | 1139 | 128.3 | 512 |
| A7 | 31.2 | 2020 | 214.6 | 916 |
| A8 | 29.6 | 1329.3 | 168.5 | 559 |
| A9 | 29.29 | 1784 | 207.5 | 739 |
| A10 | 30.7 | 1594.1 | 161.8 | 706 |
>TRINITY_DN132808_c1_g2_i3 from sample A1 / Example spliced isoformCACAAAATAGCTTTTTCTGAAAACCCGAGCCCTTAGGGCAAGCGGACCTTTTGTCATTTCTAGATACTTCTTTCCCTCCTTTACTTTATTTTCATTTCCCTATTGCTCTCGTTCAGCGGTGCTTGCAGCAAAAACCACAAACCAGAGAGCGCCTTTGTTTTTTAAATATCACGCAGAAGCTGTTAAAACCTTCTGTGTCT
GCACATTTTTCGCACCCTGAAGCACGAAATCGGGGTCAGCCATGGCGGTCTCAGTACAGAATCTGGATCTCATGGGAGAACGCCAGTACGGCCAGGACGTTCGTACTCAAAATGTGATGGCGTGCCAAGCGGTTGCGAACATCGTTAAGACTTCTCTCGGACCCGTCGGTCTCGACAAGATGCTGGTTGATGATATTGGA
GATGTCACAATCACCAACGATGGAGCAACTATACTGAAGATGTTGGAGGTGGAGCATCCAGCTGCCAAGGTTTTAGTAGAACTTGCAGAATTGCAGGATCGAGAAGTTGGTGATGGCACAACCTCAGTAGTTATTATTGCTGCAGAGCTACTCAAGCGGGCCAATGACCTTGTCCGGAATAAGATTCACCCTACTTCTAT
CATCGGTGGCTACAGACTTGCAATGAGGGAAGCTTGTAAATACATCGATGATAAACTGGCTGTCAAGGTTGAGAAGCTTGGCAAGGATTCTCTCGTAAATTGTGCAAAGACGAGTATGTCGTCAAAAATCATTGGTACCGAGAACGACTTTTTTGCAAAAATGGTCGTGGATGCTGTTCAGGCTGTCAAAACTACTAACA
ACAAGGGCGAAATAAAATATCCAATCAAGGGCATCAATATTTTGAAGGCACATGGGCAAAGTTTAAAAGATAGTTATCTTTTGAACGGGTATGCTTTAAATACTGGTCGTGCAGCTCAAGGAATGCCTACAAGAGTGGCACCAGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAAATGGGAGTG
CAGGTTCTTGTGAGTGATCCAAGGGAGCTAGATAAAATTCGTGAAAGAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGAAAGCTGGTGCGAATGTCATATTAACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTGCGTCGTGTACGCAAGGAAGATTTGCG
TCATGTTGCCAAGGCGACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATTCATCATTCCTTGGTTATGCGGATGAGGTTGTAGAGGAGCGCATTGCTGATGATGATGCCATTCTGATCAAAGGAGCAAAGAGTTCAAGAGCGGTTTCCATAATATTAAGAGGTGCTAATGATTACA
TGCTGGATGAGATGGAACGGTCTATGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGGTAGTTGCTGGTGGTGGTGCTGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTGCAGAGTTTGCAGAATCTCTTTTGATCATACCAAAG
GTTCTCGCCGTGAATGCTGCAAAAGATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACAAAAAACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAACCAGCCATGAGCAAAGTTAAAATTATACAGTTTGC
AACTGAGGCTGCTATAACAATTTTGCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAGGAGTCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGATTTTGTGAGACATCAGAAGCCGAGTTTACTGCACG
AATTTTCCTCTTAAATTTCTTATAGCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGAAATCTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTGAGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTT
TCGAAATTAATGGTAGGGATCATTTGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATTGCAAATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTTTGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAG
CAATTATTGTCAGGATTTATCTAATGGCCCC
>TRINITY_DN132808_c1_g2_i8 from sample A1 / Example unspliced isoform:CTGATTTTGAAAGCAATGACCAGTACTTAGACTGTTTGGGAAATGAAGAAACATCGCTACAGGAAAAACACAAGCCTGCTCAAAGCACAAAAGGAATGCCTACAAGAGTGGCACCAGCAAAAATTGCATGTTTGGATTTCAATCTTCAGAGGACTAAATTGCAAATGGGAGTGCAGGTTCTTGTGAGTGATCCAAGGGAG
CTAGATAAAATTCGTGAAAGgtaataggcatttaaacaactatatgtaacttttacttcttcacttgcatgtgaagcctcacatacagagactttaacttttttcttcaaaatgttatatgccaagaataaaggatattaaggcatgaattgcaatgttttcattggtaattgtatgagtagccttgcttttgtggagct
atggtatattggttcttttcagctcagaatgccatgcaggggttttaatgatgcaaccttaacctggtatagatgattgcagatcactaggcaatagcgtatgcctgtcgagataggttattatggttgttgacatgccgtagtcaatttgttttacagAGAATCAGATATAACAAAGGAACGTATTGAGAAGCTCTTGA
AAGCTGGTGCGAATGTCATATTAACAACAAAAGGAATAGATGACATGGCTCTTAAGTACTTTGTAGAAGCTGGGGCTATTGCTGTGCGTCGTGTACGCAAGGAAGATTTGCGTCATGTTGCCAAGGCGACTGGTGCTACTCAGGTTCTTACATTTGCTGATATGGAAGGGGGTGAAACATTTGATTCATCATTCCTTGGT
TATGCGGATGAGGTTGTAGAGGAGCGCATTGCTGATGATGATGCCATTCTGATCAAAGGAGCAAAGAGTTCAAGAGCGGTTTCCATAATATTAAGAGGTGCTAATGATTACATGCTGGATGAGATGGAACGGTCTATGCATGATGCCTTATCCATTGTGAAAAGGACATTGGAGTCTAACACGGTAGTTGCTGGTGGTGG
TGCTGTTGAAGCAGCTTTATCGGTATACTTGGAGAACTTGGCAACTACCCTAGGTTCTAGGGAACAACTTGCAATTGCAGAGTTTGCAGAATCTCTTTTGATCATACCAAAGGTTCTCGCCGTGAATGCTGCAAAAGATTCCACAGAACTAGTTGCTAAGCTTCGTGCTTACCATCACAGTGCCCAGACAAAGGCTGACA
AAAAACATCTCTCAAACATGGGACTTGATCTTGCAAAAGGAAATGTGAGGAACAATCTTGAAGCAGGTGTCCTCGAACCAGCCATGAGCAAAGTTAAAATTATACAGTTTGCAACTGAGGCTGCTATAACAATTTTGCGAATTGACGACATGATAAAGCTCTACAAGGAGGACAATCAAAATGAAGACTAGAGTTTTGAG
GAGTCGAAGTTGTTCCATATCCAAAATTAAATATCTACATTTTGGTGAAGAAATCAATTTAGTAAATTGAGGCTGGATTTTGTGAGACATCAGAAGCCGAGTTTACTGCACGAATTTTCCTCTTAAATTTCTTATAGCGTTTCAGGCATATGTAATGCTTTCAAGTTAGTTAAGATATTTTGCAATCTACACCTCACAGA
AATCTTGTAAGTTTTTCTGTAGAATATTTACTGTTTAGTGCAGCACTGCCTGCATTGATAATTTTGCTTCTTTCCTGAGCTAGTTTGGTCAAAAGCTCCTTGTCAGAGGTTTTCGAAATTAATGGTAGGGATCATTTGGTATTTGTCTTCAATTTTTATCACTTCATGTATGTTATGTTCCATTTTCAATTATCCCAATT
GCAAATCCCACCAAGGAAATTTTTTCCTGCCACCACAAATGCATAAGGATCTTGGGAGATCCTTTGTTGCAGAATTTTGGCCTGTATTGATATTGTTGGTTTCTTTGGGCAGCAATTATTGTCAGGATTTATCTAATGGCCCC