NA ----> NA
Intron 1 GCTGCGCACA ... TTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.73 | 74 | 53 | 19 |
| A2 | 39.6 | 61 | 40 | 12 |
| A3 | 44.53 | 71 | 57 | 11 |
| A4 | 43.86 | 32 | 25 | 10 |
| A5 | 43.86 | 32 | 25 | 4 |
| A6 | 41.39 | 211 | 149 | 22 |
| A7 | 44.99 | 280 | 229 | 26 |
| A8 | 39.02 | 350 | 224 | 60 |
| A9 | 41.63 | 251 | 179 | 30 |
| A10 | 41.34 | 166 | 117 | 26 |
>TRINITY_DN126987_c3_g1_i1 from sample A1 / Example spliced isoformAAGAGAATGAGCAGAAAGACTCAATCCCGGTGGGCAGAAAGAGGTTCCCATTGACTTGCTAATCCCCTAAACTATCTATTAAGCCCCACCATAGCCGGAGGATAATAGTTAATATACATGGCCGGCGAGTAAGGGCGTTCGCGCGGTTGCTAATTCACTCTCAGAGTAGGCATACGAATAAGAGGAAGAAGACGGGGTCG
TCGAGGGTAGAGATATTTGCAGGTGTAGGACATGGAGGAAGAGAGTTTCAGACTCCCTTCGGGGCTCCTGATGGGCGAAGAGCAGCAGCAGCAGATGCAGATGGTGGTTTTCAGAGACGATGATGAATGCCCAAGTGGTAGCTCCAACGACCTCGACTCGGATGCAGACGCAGAGGGTGAGGGGGGCAACGGTGAAATGG
CCACGGCTTTGTTGTCCCCTTCTTCTTCCCTCCTGCAAGCAGGCACGGCATCAACGGCCATATTGGTCGATCCGGAGCCCCACATCTCAGCCCAATTCTACACCTTCAACAAGGAGTCCCACCACCTGATGGTCCGCTGCATTCTGGAGGGCCGATTCGCGACGCCGGAAGAGATCAGGGGCGCGACATCTCAGGGGGTG
CTGGCCTCGTGGCGCGGAGTGTGGAAGGACCGGAACGAGGACACCGCTTACCTCACCGGGTGGAAGCGCATCCAGGACAAGCTCAACGCCCATATCGACGACCGAGGGAACGAGCTACTCTACTTCAAGAACAACTCTCGCCAATGTGTCTCCCACATTAACCAGTGGCAGGACCTCGTCATGGGTTACCACGGGGACGC
CGATTTGAAGCACCTAGGGTTCAAGGAAACCGTCGAGAGAATCAAGACGCTATGGACAGTGGGCGCCAAATTCTATGGAATCCCCGAGTCCTTCATACGTGACTGCATCGCCTCGTGCCCCGTTTGCTGCTCGGACCTGGCCGCCAGCGCCCCGCGTAGCAAACGTCGCAGGTTTGAATACACGGAATCCTTCGAGGTCC
AGGCCAAGGACGTTCCCCACAGGCTCCAGCAGTTGGCTGCCCAACACAAGGTGGTGCTCTGCATCAGGCAGAAATACATTCGCTACAAACCCTTCATGGCCGAGGTCAAGGACTATGCTTGCCATAGGGCCGGCGAGCCCAATACCAAGAGATCATCGGGGGTTCTGAAGAGAGAGCGCTATGCCTCCAAAAGATGTGGC
TGTGGGTTCCGGATCAGGGCAATTGTCCCCATAACCAATTACAATGAGAAGGAGAAGACGTTTTCTTATCAGGAAGAGGGGAAGGCCATATTCAAGCTCTATGCAGTGCATTCGGGCCACGAGCCCGGCCCACACGAGGGTAGTGCCAGGATCATACATCGCTTCGTTGGACCGGCTTCGAATACTTTGATGGATCAGGA
TCAGGTGGTGTATGGTGATGATTCTGATACCTTTGCCTTGATCGGCAAGGAGGAGCCGGATTGTCGAATGTCTGTGCTCCAACAGGTCCATGAGCTCAGAATGGAAATAGGGTTTCTGGAGTCCAAGATTGCAAACTTGTCTCACGATTCATTGGCTTCGCTGTCGCAGGACTTGTGTGCAGTAACCCAGAGGCTTAGAA
ATGTGGACGAGATGCCTAGATCCACAGAGATGCTGATGGGAAAGCACCATTCTGGCGAACTTCTTGTCGCAAACTCCCCAGGCCTCGGCCATGGCCATTGGGTAGAGCAGCACCATGAGCATGCCCAGCACTGCAATGATGTCAAGGTGGGGGAAGGAATGATTGGGGGAGACAATGGGGCCTTTGGGCAAAGCTTAGAC
GGTGGCATTTCAGAGTGGCAGAGAGAAAGACTTGAGTGTGCATCAAAAACAGATATGCTGAACGGTCACTCGGAGAAATGGATGGATTCGGTCAAAGAGGCGTGCTCTGACTTCGATGAAAAGAGCATTCTTGTTTGCCAGGATCCGAAACTCTGTAAGCCTATTCGGCAAGATGGGGCTATAGTAGCAGATGGGAATTT
AGTAGAGATGCAGGTAGATGGATTCTACCAGGACAATACCAAGTGGTATGAAGGGATGCCTTGTGGCCTGGACCCAGGTACAGATTGTGGGGATGATTTAGCTCAGTCTGTTCAGGAAGGATTTAGGCATGGCAGCATTGCATAATCTCCTCCGGAGTTATAAACTATACCACAAGGTTATTGATTGATATTGTGCTCAA
AATGAATAAAAAGAGTTCTCTTATGTATTTGGCGAAAATTTTGGGTGGAGAGTTCTCAAAGTGTAGTGACAGAGTTTTTCTATGAAACTTTGCTCTGGGAGTTTTCTCCCATTTTAAGTCTGACACAGATACTCAAAAAGTCTATCAGAATTCTGGATCAATCGAAATTCTGCCTTCTTAAAGTTGCTAGATTCCGAAAT
ACCAAAGTATTACGTTTTTAAACAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCTAAAAGTGAACACCAACATAGATTACAATATATAAGG
ATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCTAAAAGTCGTTTCTAATAGTTCTCCGTCTATTTTTTCTGTTGTGCAAAATTCAGTTATTGCTTGTATGTTGTCCCCCTGTTGTCTTGGA
AGTATTCGTATGAAATTAATATACTAATGGCAGCAACAAATGCCTTTTAGTGGCGGGTGGTTTTACCACAGCAAAAATTATGCATCTAGAATGAACATTAAAAAATCCTTGGCTGCAGGGAGTTGCATATGAACTTTTTTCTTTCATGTCGGATCTGTATTTTTGGAAAATTTAATGTTGAAGTCTTGGGAAGCCTTGGT
TATCAGGTGCGAGCTTTGGAAGTGGTGAATGAAGCTATACGATTTATTTCACTAGTTTCAATCCCACTTCTTCATCTCTGTGAGCATTATTAGATGCAATGAGTACTAAGTGGACTATTCAAAACCATGAGAAATTGGTTAGTTGTAACTATACTCATGGGATATGGGCCATATATTAAT
>TRINITY_DN126987_c3_g1_i4 from sample A1 / Example unspliced isoform:AAGAGAATGAGCAGAAAGACTCAATCCCGGTGGGCAGAAAGAGGTTCCCATTGACTTGCTAATCCCCTAAACTATCTATTAAGCCCCACCATAGCCGGAGGATAATAGTTAATATACATGGCCGGCGAGTAAGGGCGTTCGCGCGGTTGCTAATTCACTCTCAGAGTAGGCATACGAATAAGAGGAAGAAGACGGGGTCG
TCGAGGGTAGAGATATTTGCAGGTGTAGGACATGGAGGAAGAGAGTTTCAGACTCCCTTCGGGGCTCCTGATGGGCGAAGAGCAGCAGCAGCAGATGCAGATGGTGGTTTTCAGAGACGATGATGAATGCCCAAGTGGTAGCTCCAACGACCTCGACTCGGATGCAGACGCAGAGGGTGAGGGGGGCAACGGTGAAATGG
CCACGGCTTTGTTGTCCCCTTCTTCTTCCCTCCTGCAAGCAGGCACGGCATCAACGGCCATATTGGTCGATCCGGAGCCCCACATCTCAGCCCAATTCTACACCTTCAACAAGGAGTCCCACCACCTGATGGTCCGCTGCATTCTGGAGGGCCGATTCGCGACGCCGGAAGAGATCAGGGGCGCGACATCTCAGGGGGTG
CTGGCCTCGTGGCGCGGAGTGTGGAAGGACCGGAACGAGGACACCGCTTACCTCACCGGGTGGAAGCGCATCCAGGACAAGCTCAACGCCCATATCGACGACCGAGGGAACGAGCTACTCTACTTCAAGAACAACTCTCGCCAATGTGTCTCCCACATTAACCAGTGGCAGGACCTCGTCATGGGTTACCACGGGGACGC
CGATTTGAAGCACCTAGGGTTCAAGGAAACCGTCGAGAGAATCAAGACGCTATGGACAGTGGGCGCCAAATTCTATGGAATCCCCGAGTCCTTCATACGTGACTGCATCGCCTCGTGCCCCGTTTGCTGCTCGGACCTGGCCGCCAGCGCCCCGCGTAGCAAACGTCGCAGGTTTGAATACACGGAATCCTTCGAGGTCC
AGGCCAAGGACGTTCCCCACAGGCTCCAGCAGTTGGCTGCCCAACACAAGGTGGTGCTCTGCATCAGGCAGAAATACATTCGCTACAAACCCTTCATGGCCGAGGTCAAGGACTATGCTTGCCATAGGGCCGGCGAGCCCAATACCAAGAGATCATCGGGGGTTCTGAAGAGAGAGCGCTATGCCTCCAAAAGATGTGGC
TGTGGGTTCCGGATCAGGGCAATTGTCCCCATAACCAATTACAATGAGAAGGAGAAGACGTTTTCTTATCAGGAAGAGGGGAAGGCCATATTCAAGCTCTATGCAGTGCATTCGGGCCACGAGCCCGGCCCACACGAGGGTAGTGCCAGGATCATACATCGCTTCGTTGGACCGGCTTCGAATACTTTGATGGATCAGGA
TCAGGTGGTGTATGGTGATGATTCTGATACCTTTGCCTTGATCGGCAAGGAGGAGCCGGATTGTCGAATGTCTGTGCTCCAACAGGTCCATGAGCTCAGAATGGAAATAGGGTTTCTGGAGTCCAAGATTGCAAACTTGTCTCACGATTCATTGGCTTCGCTGTCGCAGGACTTGTGTGCAGTAACCCAGAGGCTTAGAA
ATGTGGACGAGATGCCTAGATCCACAGAGATGCTGATGGGAAAGCACCATTCTGGCGAACTTCTTGTCGCAAACTCCCCAGGCCTCGGCCATGGCCATTGGGTAGAGCAGCACCATGAGCATGCCCAGCACTGCAATGATGTCAAGGTGGGGGAAGGAATGATTGGGGGAGACAATGGGGCCTTTGGGCAAAGCTTAGAC
GGTGGCATTTCAGAGTGGCAGAGAGAAAGACTTGAGTGTGCATCAAAAACAGATATGCTGAACGGTCACTCGGAGAAATGGATGGATTCGGTCAAAGAGGCGTGCTCTGACTTCGATGAAAAGAGCATTCTTGTTTGCCAGGATCCGAAACTCTGTAAGCCTATTCGGCAAGATGGGGCTATAGTAGCAGATGGGAATTT
AGTAGAGATGCAGGTAGATGGATTCTACCAGGACAATACCAAGTGGTATGAAGGGATGCCTTGTGGCCTGGACCCAGGTACAGATTGTGGGGATGATTTAGCTCAGTCTGTTCAGGAAGGATTTAGGCATGGCAGCATTGCATAATCTCCTCCGGAGTTATAAACTATACCACAAGGTTATTGATTGATATTGTGCTCAA
AATGAATAAAAAGgctgcgcacatatagtagaaaagtgggctccagcctctgagcgtgctgactgctgagtcccgcttagccatagtcatgactcatgaggactttgcaacggatttcggtgcgtttctatggctgaagaaaggtcctctgaaaaatgtactttctgatgtggatattgatattgtgatttgacatggtt
atgggagttacgtgttaaaactaaattgcaagataaaatgattcattctttaatatgatggaaatagtctaatgtcttttttgatttgctttttttggcagAGTTCTCTTATGTATTTGGCGAAAATTTTGGGTGGAGAGTTCTCAAAGTGTAGTGACAGAGTTTTTCTATGAAACTTTGCTCTGGGAGTTTTCTCCCAT
TTTAAGTCTGACACAGATACTCAAAAAGTCTATCAGAATTCTGGATCAATCGAAATTCTGCCTTCTTAAAGTTGCTAGATTCCGAAATACCAAAGTATTACGTTTTTAAACAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGG
TGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCTAAAAGTGAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCT
AAAAGTCGTTTCTAATAGTTCTCCGTCTATTTTTTTCTGTTGTGCAAAATTCAGTTATTGCTTGTATGTTGTCCCCCTGTTGTCTTGGAAGTATTCGTATGAAATTAATATACTAATGGCAGCAACAAATGCCTTTTAGTGGCGGGTGGTTTTACCACAGCAAAAATTATGCATCTAGAATGAACATTAAAAAATCCTTG
GCTGCAGGGAGTTGCATATGAACTTTTTTCTTTCATGTCGGATCTGTATTTTTGGAAAATTTAATGTTGAAGTCTTGGGAAGCCTTGGTTATCAGGTGCGAGCTTTGGAAGTGGTGAATGAAGCTATACGATTTATTTCACTAGTTTCAATCCCACTTCTTCATCTCTGTGAGCATTATTAGATGCAATGAGTACTAAGT
GGACTATTCAAAACCATGAGAAATTGGTTAGTTGTAACTATACTCATGGGATATGGGCCATATATTAAT
Intron 2 GTACTTTCTG ... TTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.38 | 13 | 3 | 19 |
| A2 | 54.55 | 10 | 2 | 12 |
| A3 | 52.38 | 10 | 1 | 11 |
| A4 | 58.82 | 7 | 1 | 10 |
| A5 | 50 | 4 | 0 | 4 |
| A6 | 51.16 | 21 | 3 | 22 |
| A7 | 48.15 | 28 | 5 | 26 |
| A8 | 57.69 | 44 | 10 | 60 |
| A9 | 50 | 30 | 0 | 30 |
| A10 | 49.06 | 27 | 0 | 26 |
>TRINITY_DN45982_c1_g1_i6 from sample A7 / Example spliced isoformGTGATTTTGGGATAAAAACTGGTTAAAATTTTTGCTGGAAATTGTTATTTTCGCAATTTTGTAATTTCTGCAATTGAGATTGTCTGTTCTAGACTAATTGTTTAATTTTAAAACTACCCAGATCACTGAAATTGCAATCTGAGTACTTCAAATTGCGATTTTGGCAAGAATTACTCCACCAAATTCCAGCCAGTTGAGAA
CGTTTTAGTTAACCCTTATATTTAGTTAACCTTTATACAACTCCGTAAAGATATGTTTACATGGTTGGTGTTACCGTAGTCCGTCCATATACACTTTACTTATTGAATTTTGTGTACTACAATTGAATTTTTTATATTCGCTGATAGGCTGCGCACATATAGTAGAAAAGTGGGCTCCAGCCTCTGAGCGTGCTGACTGC
TGAGTCCCGCTTAGCCATAGTCATGACTCATGAGGACTTTGCAACGGATTTCGGTGCGTTTCTATGGCTGAAGAAAGGTCCTCTGAAAAATAGTTCTCTTATGTATTTGGCGAAAATTTTGGGTGGAGAGTTCTCAAAGTGTAGTGACAGAGTTTTTCTATGAAACTTTGCTCTGGGAGTTTTCTCCCATTTTAAGTCTG
ACACAGATACTCAAAAAGTCTATCAGAATTCTGGATCAATCGAAATTCTGCCTTCTTAAAGTTGCTAGATTCCGAAATACCAAAGTATTACGTTTTTAAACAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGA
TCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCTAAAAGT
>TRINITY_DN45982_c1_g1_i3 from sample A7 / Example unspliced isoform:GTGATTTTGGGATAAAAACTGGTTAAAATTTTTGCTGGAAATTGTTATTTTCGCAATTTTGTAATTTCTGCAATTGAGATTGTCTGTTCTAGACTAATTGTTTAATTTTAAAACTACCCAGATCACTGAAATTGCAATCTGAGTACTTCAAATTGCGATTTTGGCAAGAATTACTCCACCAAATTCCAGCCAGTTGAGAA
CGTTTTAGTTAACCCTTATATTTAGTTAACCTTTATACAACTCCGTAAAGATATGTTTACATGGTTGGTGTTACCGTAGTCCGTCCATATACACTTTACTTATTGAATTTTGTGTACTACAATTGAATTTTTTATATTCGCTGATAGGCTGCGCACATATAGTAGAAAAGTGGGCTCCAGCCTCTGAGCGTGCTGACTGC
TGAGTCCCGCTTAGCCATAGTCATGACTCATGAGGACTTTGCAACGGATTTCGGTGCGTTTCTATGGCTGAAGAAAGGTCCTCTGAAAAATgtactttctgatgtggatattgatattgtgatttgacatggttatgggagttacgtgttaaaactaaattgcaagataaaatgattcattctttaatatgatggaaata
gtctaatgtcttttttgatttgctttttttggcagAGTTCTCTTATGTATTTGGCGAAAATTTTGGGTGGAGAGTTCTCAAAGTGTAGTGACAGAGTTTTTCTATGAAACTTTGCTCTGGGAGTTTTCTCCCATTTTAAGTCTGACACAGATACTCAAAAAGTCTATCAGAATTCTGGATCAATCGAAATTCTGCCTTCT
TAAAGTTGCTAGATTCCGAAATACCAAAGTATTACGTTTTTAAACAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCTAAAAGT
Intron 3 GTGCGTTTCT ... TTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.52 | 10 | 4 | 19 |
| A2 | 57.14 | 9 | 2 | 12 |
| A3 | 57.89 | 8 | 1 | 11 |
| A4 | 58.82 | 7 | 0 | 10 |
| A5 | 50 | 4 | 0 | 4 |
| A6 | 52.38 | 20 | 3 | 22 |
| A7 | 54.17 | 22 | 4 | 26 |
| A8 | 56.07 | 47 | 16 | 60 |
| A9 | 46.15 | 35 | 0 | 30 |
| A10 | 46.43 | 30 | 1 | 26 |
>TRINITY_DN45982_c1_g1_i4 from sample A7 / Example spliced isoformGTGATTTTGGGATAAAAACTGGTTAAAATTTTTGCTGGAAATTGTTATTTTCGCAATTTTGTAATTTCTGCAATTGAGATTGTCTGTTCTAGACTAATTGTTTAATTTTAAAACTACCCAGATCACTGAAATTGCAATCTGAGTACTTCAAATTGCGATTTTGGCAAGAATTACTCCACCAAATTCCAGCCAGTTGAGAA
CGTTTTAGTTAACCCTTATATTTAGTTAACCTTTATACAACTCCGTAAAGATATGTTTACATGGTTGGTGTTACCGTAGTCCGTCCATATACACTTTACTTATTGAATTTTGTGTACTACAATTGAATTTTTTATATTCGCTGATAGGCTGCGCACATATAGTAGAAAAGTGGGCTCCAGCCTCTGAGCGTGCTGACTGC
TGAGTCCCGCTTAGCCATAGTCATGACTCATGAGGACTTTGCAACGGATTTCGAGTTCTCTTATGTATTTGGCGAAAATTTTGGGTGGAGAGTTCTCAAAGTGTAGTGACAGAGTTTTTCTATGAAACTTTGCTCTGGGAGTTTTCTCCCATTTTAAGTCTGACACAGATACTCAAAAAGTCTATCAGAATTCTGGATCA
ATCGAAATTCTGCCTTCTTAAAGTTGCTAGATTCCGAAATACCAAAGTATTACGTTTTTAAACAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTA
TTCTAAAAGT
>TRINITY_DN45982_c1_g1_i3 from sample A7 / Example unspliced isoform:GTGATTTTGGGATAAAAACTGGTTAAAATTTTTGCTGGAAATTGTTATTTTCGCAATTTTGTAATTTCTGCAATTGAGATTGTCTGTTCTAGACTAATTGTTTAATTTTAAAACTACCCAGATCACTGAAATTGCAATCTGAGTACTTCAAATTGCGATTTTGGCAAGAATTACTCCACCAAATTCCAGCCAGTTGAGAA
CGTTTTAGTTAACCCTTATATTTAGTTAACCTTTATACAACTCCGTAAAGATATGTTTACATGGTTGGTGTTACCGTAGTCCGTCCATATACACTTTACTTATTGAATTTTGTGTACTACAATTGAATTTTTTATATTCGCTGATAGGCTGCGCACATATAGTAGAAAAGTGGGCTCCAGCCTCTGAGCGTGCTGACTGC
TGAGTCCCGCTTAGCCATAGTCATGACTCATGAGGACTTTGCAACGGATTTCGgtgcgtttctatggctgaagaaaggtcctctgaaaaatgtactttctgatgtggatattgatattgtgatttgacatggttatgggagttacgtgttaaaactaaattgcaagataaaatgattcattctttaatatgatggaaata
gtctaatgtcttttttgatttgctttttttggcagAGTTCTCTTATGTATTTGGCGAAAATTTTGGGTGGAGAGTTCTCAAAGTGTAGTGACAGAGTTTTTCTATGAAACTTTGCTCTGGGAGTTTTCTCCCATTTTAAGTCTGACACAGATACTCAAAAAGTCTATCAGAATTCTGGATCAATCGAAATTCTGCCTTCT
TAAAGTTGCTAGATTCCGAAATACCAAAGTATTACGTTTTTAAACAACACCAACATAGATTACAATATATAAGGATACGTCAGTGACCGCTCTGAAATTCATGTGCGCCAAAGGGTTCTACGGCCTTACTGTGGTGTCCACCGATCTTCATTTGATCTTGTGCGTAGCTTATGAGATGTGTATTCTAAAAGT