NA ----> NA
Intron 1 GTAAATTATG ... AAGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.1 | 11 | 13 | 14 |
| A2 | 61.9 | 4 | 2 | 11 |
| A3 | 45.45 | 15 | 11 | 14 |
| A4 | 48.57 | 9 | 7 | 10 |
| A5 | 77.78 | 2 | 8 | 6 |
| A6 | 33.33 | 1 | 0 | 1 |
| A7 | 53.85 | 15 | 13 | 22 |
| A8 | 48.72 | 20 | 14 | 24 |
| A9 | 33.33 | 19 | 1 | 18 |
| A10 | 47.83 | 6 | 0 | 11 |
>TRINITY_DN42608_c5_g2_i1 from sample A9 / Example spliced isoformTCTAAGTCAAATCTATTTTGTAATTAACTTTATTAATAAAGTTAAAGTCTTATATTTGGTTATTGAGTCTAATAAAGTGTATTTTTAATACATTAGTGATTTTGACTAATCTCAACCATACATCTCACTGAGAGATTAGAGTTTTGGTAGATAGGGCTTCAGCTAAAGTATAAAGGTAAGTCAAGGTAGAGGGGTAAGAC
ACATTCATTCTCTACTTGAAGACAGTTTGGTCAGAAGGTGAAGAAACTCATCTGAAGAGCAGAGTTATAGCGTCAGAGAGGAGCCTGGTTTAGCAACTAGGCAGATTTCAGTGAGCAGGCTACAGCAGAAGCAGATCCGTACAGTTGTACGTATATATACAGTAGATCTGTACAGTTGTACAGACCCTTACATAATTCAG
TACAGTCATACGAGCAGGTTTGTACAGTTGAATAGACTGTCATACAGCAGGGCAGTGTAGGGGCTGATTTTTGCTGTTACTAGTGGGCAGATTTCCTCACTAAGTGTGCATATTTTTTGCCTCATTTGAGTGTACCGTACAATTGCATGCTTTTGGCAGCTGTGGAGGTTTCCTTGCAAGCTTTGATCCATTAATGGAAA
GCCGATTTGAAAGATTCACTAGGCAAACAAAGAGTTTATCTGGAACAATCATGGGAGTTGAGGCTGGGCCCATGGCTTCTGGAGCTCAAACTGGCGATTGGAATGATGCTGAAGCTGGCAACTTTTCATTCCCTTTTGCAATAGACTATCGTTATGGTGGGAAGTTCTTCAACAGTGATATTTTCATGGATGAGGTTCTT
GACAGCTTTACTTCGCGCCAAAATCGTCAGACTTCTGAAGCAATGGAGTTTCAATATTCATCAGGTGCTGCAATTGGAGCCATTGTGCAGCTTCTCAAGTTTGCACCACCTCTTCAGCAGTCTACAACGCTAGGCAATTCAGATGGCTTTTCCAAGCCATCAAAGTTACCATCACAAAAAAGTACAGATGGAAATATCTT
CTTTTGTCCTCACAAACTGGACACCACTGGACTGCTGAGAAAACAATCTTTTGTGATACCAAATTGTCAGCAAGAGGGTGCAACAAGTTCCCATTCTGAAAAAACAGCAGGTGAAGCTTTAAAAGAGCTAGACAGGTACAAAGAGATCAAGAACCAGATATTAAGTAAAGGCAAGAATAACACAACAGAAGATTGACCGA
CTATTTTCTCATGTACTGTCTAATTAGCTTGATATCAAATGATGCTTCGCTGAATCATGGATACATGGAAAGTCAGTCATGAACTTGATCAATGTTCATTCTTACTCGAGACCACTTACTCTAATATGGTGGCAACTCTTTTGTACATTTTAGCTAATTTATACTGGAATAGGAAACAAATGTCATAGTCTTATGAATCA
TCTGTTATTATATTTGTATAGAAAGAGATCTAGACTCTAAACTTCTTCATTTTATAAGAAACAAACTATACAATGCAGGAGTTTGATTTGATAGAATGACTTTTGCTGGGAACTCCATTGTCACGCAAACTGTAGCTGTTAACTTGTACAGTTTCTGGAGTATCTTCAGCTGTATAGGCATATCCATTGTAATGTTCTCT
CTCATTATGAAAAAAGTTTGGGATTTACCCACTTTCAAG
>TRINITY_DN42608_c5_g2_i5 from sample A9 / Example unspliced isoform:TCTAAGTCAAATCTATTTTGTAATTAACTTTATTAATAAAGTTAAAGTCTTATATTTGGTTATTGAGTCTAATAAAGTGTATTTTTAATACATTAGTGATTTTGACTAATCTCAACCATACATCTCACTGAGAGATTAGAGTTTTGGTAGATAGGGCTTCAGCTAAAGTATAAAGGTAAGTCAAGGTAGAGGGGTAAGAC
ACATTCATTCTCTACTTGAAGACAGTTTGGTCAGAAGGTGAAGAAACTCATCTGAAGAGCAGAGTTATAGCGTCAGAGAGGAGCCTGGTTTAGCAACTAGGCAGATTTCAGTGAGCAGGCTACAGCAGAAGCAGATCCGTACAGTTGTACGTATATATACAGTAGATCTGTACAGTTGTACAGACCCTTACATAATTCAG
TACAGTCATACGAGCAGGTTTGTACAGTTGAATAGACTGTCATACAGCAGGGCAGTGTAGGGGCTGATTTTTGCTGTTACTAGTGGGCAGATTTCCTCACTAAGTGTGCATATTTTTTGCCTCATTTGAGTGTACCGTACAATTGCATGCTTTTGGCAGCTGTGGAGGTTTCCTTGCAAGCTTTGATCCATTAATGGAAA
GCCGATTTGAAAGAgtaaattatgtctatactgtatttatgcttcctctgttcattttcccactatatgtgtggatacttctatttgaagaatttcatttctgcaaatcaaatatcagtttaatttgagaacatagggacagcattcacctagggttgggaaaatttaggggtagcccacgataggacagtctagagaga
tattgtattgtcattgggcgggtcacttatggacatgaaatagaagacagtcacatcctggcgtccttggtaggtaggcgtatgtgagtcaaaactgtgcaatccatatactacagttttaactagatttgatttatagctgtcattatgccctttgattgttgtaacaataatttaagatgcatattcaaactttaatt
atattattctttagtgttttccttttgtgatcattctgatgccgattctgggtattgttcatgctgtttcttaaattcattcttcattcctcttttaattcttgcatagcatcttctatccctgtctctattgtgtatatttacttgataataatggtggcagttattaattttatgaagattgcagTTCACTAGGCAAA
CAAAGAGTTTATCTGGAACAATCATGGGAGTTGAGGCTGGGCCCATGGCTTCTGGAGCTCAAACTGGCGATTGGAATGATGCTGAAGCTGGCAACTTTTCATTCCCTTTTGCAATAGACTATCGTTATGGTGGGAAGTTCTTCAACAGTGATATTTTCATGGATGAGGTTCTTGACAGCTTTACTTCGCGCCAAAATCGT
CAGACTTCTGAAGCAATGGAGTTTCAATATTCATCAGGTGCTGCAATTGGAGCCATTGTGCAGCTTCTCAAGTTTGCACCACCTCTTCAGCAGTCTACAACGCTAGGCAATTCAGATGGCTTTTCCAAGCCATCAAAGTTACCATCACAAAAAAGTACAGATGGAAATATCTTCTTTTGTCCTCACAAACTGGACACCAC
TGGACTGCTGAGAAAACAATCTTTTGTGATACCAAATTGTCAGCAAGAGGGTGCAACAAGTTCCCATTCTGAAAAAACAGCAGGTGAAGCTTTAAAAGAGCTAGACAGGTACAAAGAGATCAAGAACCAGATATTAAGTAAAGGCAAGAATAACACAACAGAAGATTGACCGACTATTTTCTCATGTACTGTCTAATTAG
CTTGATATCAAATGATGCTTCGCTGAATCATGGATACATGGAAAGTCAGTCATGAACTTGATCAATGTTCATTCTTACTCGAGACCACTTACTCTAATATGGTGGCAACTCTTTTGTACATTTTAGCTAATTTATACTGGAATAGGAAACAAATGTCATAGTCTTATGAATCATCTGTTATTATATTTGTATAGAAAGAG
ATCTAGACTCTAAACTTCTTCATTTTATAAGAAACAAACTATACAATGCAGGAGTTTGATTTGATAGAATGACTTTTGCTGGGAACTCCATTGTCACGCAAACTGTAGCTGTTAACTTGTACAGTTTCTGGAGTATCTTCAGCTGTATAGGCATATCCATTGTAATGTTCTCTCTCATTATGAAAAAAGTTTGGGATTTA
CCCACTTTCAAG
Intron 2 GTAAATTATG ... TTTTATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.52 | 10 | 13 | 13 |
| A2 | 56.52 | 5 | 2 | 11 |
| A3 | 45.45 | 15 | 11 | 14 |
| A4 | 64.71 | 3 | 7 | 4 |
| A5 | 100 | 0 | 8 | 4 |
| A6 | 33.33 | 1 | 0 | 1 |
| A7 | 60 | 10 | 13 | 17 |
| A8 | 50 | 16 | 14 | 18 |
| A9 | 33.33 | 9 | 1 | 8 |
| A10 | 47.83 | 6 | 0 | 11 |
>TRINITY_DN115440_c12_g2_i2 from sample A1 / Example spliced isoformAGGTAAGTCAAGGTAGAGGGGTAAGACACATTCATTCTCTACTTGAAGACAGTTTGGTCAGAAGGTGAAGAAACTCATCTGAAGAGCAGAGTTATAGCGTCAGAGAGGAGCCTGGTTTAGCAACTAGGCAGATTTCAGTGAGCAGGCTACAGCAGAAGCAGATCCGTACAGTTGTACGTATATATACAGTAGATCTGTAC
AGTTGTACAGACCCTTACATAATTCAGTACAGTCATACGAGCAGGTTTGTACAGTTGAATAGACTGTCATACAGCAGGGCAGTGTAGGGGCTGATTTTTGCTGTTACTAGTGGGCAGATTTCCTCACTAAGTGTGCATATTTTTTGCCTCATTTGAGTGTACCGTACAATTGCATGCTTTTGGCAGCTGTGGAGGTTTCC
TTGCAAGCTTTGATCCATTAATGGAAAGCCGATTTGAAAGAATTGCAGTTCACTAGGCAAACAAAGAGTTTATCTGGAACAATCATGGGAGTTGAGGCTGGGCCCATGGCTTCTGGAGCTCAAACTGGCGATTGGAATGATGCTGAAGCTGGCAACTTTTCATTCCCTTTTGCAATAGACTATCGTTATGGTGGGAAGTT
CTTCAACAGTGATATTTTCATGGATGAGGTTCTTGACAGCTTTACTTCGCGCCAAAATCGTCAGACTTCTGAAGCAATGGAGTTTCAATATTCATCAGGTGCTGCAATTGGAGCCATTGTGCAGCTTCTCAAGTTTGCACCACCTCTTCAGCAGTCTACAACGCTAGGCAATTCAGATGGCTTTTCCAAGCCATCAAAGT
TACCATCACAAAAAAGTACAGATGGAAATATCTTCTTTTGTCCTCACAAACTGGACACCACTGGACTGCTGAGAAAACAATCTTTTGTGATACCAAATTGTCAGCAAGAGGGTGCAACAAGTTCCCATTCTGAAAAAACAGCAGGTGAAGCTTTAAAAGAGCTAGACAGGTACAAAGAGATCAAGAACCAGATATTAAGT
AAAGGCAAGAATAACACAACAGAAGATTGACCAACTACTTTCTCATGTACTGTCTAATTAGCTTGATATCAAATGATGCTTCGCTGAATCATGGATACATGGAAAGTCAGTCATGAACTTGATCAATGTTCATTCTTACTCGAGACCACTTACTCTAATATGGTGGCAACTCTTTTGTACATTTTAGCTAATTTATACTG
GAATAGGAAACAAATGTCATAGTCTTATGAATCATCTGTTATTATATTTGTATAGAAAGAGATCTAGACTCTAAACTTCTTCATTTTATAAGAAACAAACTATACAATGCAGGG
>TRINITY_DN115440_c12_g2_i3 from sample A1 / Example unspliced isoform:AGGTAAGTCAAGGTAGAGGGGTAAGACACATTCATTCTCTACTTGAAGACAGTTTGGTCAGAAGGTGAAGAAACTCATCTGAAGAGCAGAGTTATAGCGTCAGAGAGGAGCCTGGTTTAGCAACTAGGCAGATTTCAGTGAGCAGGCTACAGCAGAAGCAGATCCGTACAGTTGTACGTATATATACAGTAGATCTGTAC
AGTTGTACAGACCCTTACATAATTCAGTACAGTCATACGAGCAGGTTTGTACAGTTGAATAGACTGTCATACAGCAGGGCAGTGTAGGGGCTGATTTTTGCTGTTACTAGTGGGCAGATTTCCTCACTAAGTGTGCATATTTTTTGCCTCATTTGAGTGTACCGTACAATTGCATGCTTTTGGCAGCTGTGGAGGTTTCC
TTGCAAGCTTTGATCCATTAATGGAAAGCCGATTTGAAAGAgtaaattatgtctatactgtatttatgcttcctctgttcattttcccactatatgtgtggatacttctatttgaagaatttcatttctgcaaatcaaatatcagtttaatttgagaacatagggacagcattcacctagggttgggaaaatttaggggt
agcccacgataggacagtctagagagatattgtattgtcattgggcgggtcacttatggacatgaaatagaagacggtcacatcctggcgtccttggtaggtaggcgtatgtgagtcaaaactgtgcaatccatatactacagttttaactagatttgatttatagctgtcattatgccctttgattgttgtaacaataa
tttaagatgcatattcaaactttaattatattattctttagtgttttccttttgtgatcattctgatgccgattctgggtattgttcatgctgtttcttaaattcattcttcattcctcttttaattcttgcatagcatcttctatccctgtctctattgtgtatatttacttgataataatggtggcagttattaattt
tatgaagATTGCAGTTCACTAGGCAAACAAAGAGTTTATCTGGAACAATCATGGGAGTTGAGGCTGGGCCCATGGCTTCTGGAGCTCAAACTGGCGATTGGAATGATGCTGAAGCTGGCAACTTTTCATTCCCTTTTGCAATAGACTATCGTTATGGTGGGAAGTTCTTCAACAGTGATATTTTCATGGATGAGGTTCTT
GACAGCTTTACTTCGCGCCAAAATCGTCAGACTTCTGAAGCAATGGAGTTTCAATATTCATCAGGTGCTGCAATTGGAGCCATTGTGCAGCTTCTCAAGTTTGCACCACCTCTTCAGCAGTCTACAACGCTAGGCAATTCAGATGGCTTTTCCAAGCCATCAAAGTTACCATCACAAAAAAGTACAGATGGAAATATCTT
CTTTTGTCCTCACAAACTGGACACCACTGGACTGCTGAGAAAACAATCTTTTGTGATACCAAATTGTCAGCAAGAGGGTGCAACAAGTTCCCATTCTGAAAAAACAGCAGGTGAAGCTTTAAAAGAGCTAGACAGGTACAAAGAGATCAAGAACCAGATATTAAGTAAAGGCAAGAATAACACAACAGAAGATTGACCAA
CTACTTTCTCATGTACTGTCTAATTAGCTTGATATCAAATGATGCTTCGCTGAATCATGGATACATGGAAAGTCAGTCATGAACTTGATCAATGTTCATTCTTACTCGAGACCACTTACTCTAATATGGTGGCAACTCTTTTGTACATTTTAGCTAATTTATACTGGAATAGGAAACAAATGTCATAGTCTTATGAATCA
TCTGTTATTATATTTGTATAGAAAGAGATCTAGACTCTAAACTTCTTCATTTTATAAGAAACAAACTATACAATGCAGGG