NA ----> NA
Intron 1 GTATGTAATT ... ATTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.42 | 7 | 63 | 19 |
| A2 | 82.86 | 3 | 23 | 6 |
| A3 | 70.3 | 15 | 58 | 13 |
| A4 | 93.1 | 1 | 20 | 7 |
| A5 | 81.82 | 5 | 39 | 6 |
| A6 | 73.03 | 12 | 29 | 36 |
| A7 | 78.72 | 10 | 46 | 28 |
| A8 | 86.21 | 4 | 12 | 38 |
| A9 | 77.08 | 11 | 40 | 34 |
| A10 | 66.67 | 21 | 53 | 31 |
>TRINITY_DN46155_c1_g1_i13 from sample A7 / Example spliced isoformGAATTTCCAAAATCACAAAATCGACTCTCATATCGTCTTGTAATGGAAGTGGATTTTGATGGTTGATGTGTGAGCAAGCAAATGGTTGGAATATTAGTTAGTGAAGATTCATCTCAACAAGTCAAACTCAACCAGGGTTTTAACTTTTCCCTAGGTACGATAACCTTTTACTGTGGTGAATCTGGTTGTACTTACTTCTG
CCGGACAGGAACCACAATGTCCTCGTTGTTCTCGCTCAAGAGCCAGAGGGAGTGGAACTGGGAATGGAAGATGACTCAGGCGATCTTCGGCAAAACCCTTAATTCGATACCCTTCAGAGCAGCCCAGCCTAGCACAGCACAGGCGAGTTCATTCATGTCCCCTTCTCCTAGGTGGTGTGCTCCCTTCATGCACATGTGTG
GACCTTTGGAAGCATCCTTCATTTCCTTGGCACATGTCCAACCCCATTTGACCACTTGGGACGAGTTGGGATGAGATTTGATCAGCTTTTGAGGAGTTTGTTGGACATTTGGACCATTATTCTCTCTTGTTGGACTTGGCACACAGTTTGAGGAGTTGGTTAGAGGAGCACTCTAGGGTTTATGACTTGTCATGAACCCT
TGGGACACTTGCCATCATCTTGGTTGGAAAACTCCATCTCTTGAAGCAATATTCATCAACTATTCCTTGTGGTACATTACACCTTGGAGGGTGTGTTGCTATTTTTGACTTGTCAAGCATTTGGATGAGGTTGTCACATCTTGTTAATTGGGTTATGGACAGCTGGACTAACCATTATTACTTTCTACATCTTCTAAGGC
GTTCCTCTTTTGAAGAATATTTATATCGCTTATGTATTATTTCTCTCTCATCCTAGTGGTGTGCCCCCCTCACGTGGTCAAAGAGTATAGGCTTTTGGATTTAGGGTTGCTAGTTTTGACCATGTCATTGGAGAATTTAGCAACTCTCTCATCTATATAAAAGATACTCCTCTCATTGTTTGCTTTTACTAGAACTTGAG
ATAATAGAATTTTCACTTGCT
>TRINITY_DN46155_c1_g1_i11 from sample A7 / Example unspliced isoform:GAATTTCCAAAATCACAAAATCGACTCTCATATCGTCTTGTAATGGAAGTGGATTTTGATGGTTGATGTGTGAGCAAGCAAATGGTTGGAATATTAGTTAGTGAAGATTCATCTCAACAAGTCAAACTCAACCAGGGTTTTAACTTTTCCCTAGGTACGATAACCTTTTACTGTGGTGAATCTGGTTGTACTTACTTCTG
CCGGACAGGAACCACAATGTCCTCGTTGTTCTCGCTCAAGAGCCAGAGGGAGTGGAACTGGGAATGGAAGATGACTCAGGCGATCTTCGGCAAAACCCTTAATTCGATACCCTTCAGAGCAGCCCAGCCCAGCACAGCACAGGCGAGgtatgtaattgattgctgttagataattcttatgttgtttgcttaacatgctg
tgatgctcgccttgctttcacctggttaattaataagatccatcccgggacatgggaaaggggaagggaagatggaacccgttgttgtactcaattcaatggcgattgttttatggaattgaaatcgaaaggaggagttaatggctgaatcagagggtttagggttcgattccagggagggtctaggggcacctgctgca
tcgtcgttgcctccccggaagcgtctgcttgcgggtttgaagaagcagcagcagccaaatggatggctgtcttcctcttcttcttcttattcttcatctccttcagcgtccactgtcgtgaattccccatccccagcctcagccccagcccctgcctccagcctcagccccagcccctacagcccttgaagggttgaaga
agcagcagcatcaaaatggatggctgtcttcctcatcttcttcttattcttcatctccttcagcgtccactgtcgtgaattccccatccccagcctcagccccagcccctgcagcccttgaagggtcagggaacccaaatttgaaatccccccaggagattgcagaaacatccaaagctgcagctttggccgctgcagag
gtcgctgctgctgccaagagagttgctgttgaaaaagctgcggtagctgtgaaggcggctactgccgccaaggctgccctagaattggcagcttctgcagcagccagggaagaaatggagggcagagggttttgtgttaacataaaaagcaaacctactaaaaagaagcatgtgcccatcgaacttctttataaagggga
acaaattgagacaggaggtgccgaggaagaggaggaggaagagagagcgcctacagtgctgctgcgttgtaaacgtaacgctgtgaaggcgaagcatgaacctatcaagctttcatacaaaggaaaaaggatcgagacaaagggagtgaaagataatgcaaacacagaagtgatgccgcattcgttaaacgacgaggaat
tggcacgtcagctgcaccgtgctatcaacagctctccgaggatttctaggaatatggggcacttggatgcacgccatcattcagaaaaacaaatggactataatttatgctccccatcttctagtcctgttagtccatctaagaaatctgatcgtcagaccctgaggtttgtatctactttacaagctgtggtttctgat
gcacagcatggtttagaagagcttggagtctgtgcttacagtaaggctgttacaagtaatgtaaatgattggtcctcagaggcagaggtctgtaatttggacaaagtggcagaaacagtttctgaagctatggaggaagagaattttgaatcgagaaagaacaagctagaggtatctaaaatggaggaagaagctagttg
ttctttgcgatgtaatggacccgctgcagatcagcatgatttagacattaaggatgccactagtgtgaataaaggaggacttaaaagaaaaaagacttcattaaatacttggaatattgaagaatgtggagaagctgggttatctaagtgtagcaggactcaaattcattctggaaatcatcaagaggactgtctaggtc
agagaactgaaggttctcctttaactgatgagagcacactgagatcacatgctaagcgatctaacatgaggcgtaatttggagaggaggacaaagtctatatccgaagatttcccccaggaaagtgatctttcagtggaagcaacatcaacttgtcgtagggatatacttaaaccagatcaaaaatttgcaggcagtgtg
aatttatcttctacccaattaagccactgtctgcctcccaaaactcctatcttcacaagtagatcagcaaggcggcgcacttgattattgcagTTCATTCATGTCCCCTTCTCCTAGGTGGTGTGCTCCCTTCATGCACATGTGTGGACCTTTGGAAGCATCCTTCATTTCCTTGGCACATGTCCAACCCCATTTGACCA
CTTGGGACGAGTTGGGATGAGATTTGATCAGCTTTTGAGGAGTTTGTTGGACATTTGGACCATTATTCTCTCTTGTTGGACTTGGCACACAGTTTGAGGAGTTGGTTAGAGGAGCACTCTAGGGTTTATGACTTGTCATGAACCCTTGGGACACTTGCCATCATCTTGGTTGGAAAACTCCATCTCTTGAAGCAATATTC
ATCAACTATTCCTTGTGGTACATTACACCTTGGAGGGTGTGTTGCTATTTTTGACTTGTCAAGCATTTGGATGAGGTTGTCACATCTTGTTAATTGGGTTATGGACAGCTGGACTAACCATTATTACTTTCTACATCTTCTAAGGCGTTCCTCTTTTGAAGAATATTTATATCGCTTATGTATTATTTCTCTCTCATCCT
AGTGGTGTGCCCCCCTCACGTGGTCAAAGAGTATAGGCTTTTGGATTTAGGGTTGCTAGTTTTGACCATGTCATTGGAGAATTTAGCAACTCTCTCATCTATATAAAAGATACTCCTCTCATTGTTTGCTTTTACTAGAACTTGAGATAATAGAATTTTCACTTGCT
Intron 2 GTATGTAATT ... ATTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.03 | 14.3 | 63 | 24.8 |
| A2 | 81.97 | 4.8 | 23 | 19.6 |
| A3 | 71.15 | 15.8 | 58.8 | 19 |
| A4 | 79.54 | 4.6 | 20 | 13 |
| A5 | 83.31 | 4.9 | 39 | 9.8 |
| A6 | 60.54 | 32.9 | 29 | 64.4 |
| A7 | 66.74 | 27.3 | 46 | 55.9 |
| A8 | 63.89 | 34.1 | 12 | 86.4 |
| A9 | 67.12 | 27.9 | 40 | 67 |
| A10 | 58.44 | 33.5 | 52.8 | 39.3 |
>TRINITY_DN115905_c5_g4_i3 from sample A1 / Example spliced isoformGGCGGAATTTCCAAAATCACAAAATCGACTCTCATATCGTCTTGTAATGGAAGTGGATTTTGATGGTTGATGTGTGAGCAAGCAAATGGTTGGAATATTAGTTAGTGAAGATTCATCTCAACAAGTCAAACTCAACCAGGGTTTTAACTTTTCCCTAGGTACGATAACCTTTTACTGTGGTGAATCTGGTTGTACTTACT
TCTGCCGGACAGGAACCACAATGTCCTCGTTGTTCTCGCTCAAGAGCCAGAGGGAGTGGAACTGGGAATGGAAGATGACTCAGGCGATCTTCGGCAAAACCCTTAATTCGATACCCTTCAGAGCAGCCCAGCCTAGCACAGCACAGGCGAGATCAATCTTCATTCTCCTCCACACTTTCCTCTCGATCCTTTGGACTATT
GTATTGAAATGGCAGAGGTGGTTCTATAAATTGAGGTCTTGTGTTCAAGGTATACGCATTTCAGGTTTTAGTTGTTACATATTTTAAGTAATAAAGCTTCTTACAAGACTGCAAGCGGTTAATGGGATATCCAGTGATGTGAACTTCTGGTTTACATATTTGAAAGGAACGTCATGAAAAAGCTTGTATAGTTGGCATGT
CCTAGCTAACATACCAATCTATCTGTTTATGTCAAGTAAGATGTCACATCTAGTGTTTTGTTTTCTAGAACAGCAGCAGTTTTGGAAGCCTCTTGCAGTATTTACAGTTTAGAATCAGTTTTTTCCCTGTGGTTTTCCTCCTCATGTATTTTAGATATGTGCTGACATTCTTTGACAGCAGCACATTGCATAATTTAGTT
GGAAGGTAGGATCATGCAACGTCATTGACGTTATTACCTTGTATTGTAGACTGCCAATGCCTATGTACATAACTACTGTATCATTGTTGAAGTTCAGAACGGCCCAATGAGGTATTCCTCCATTTTTTTGGGTGGATACTGTAGCCATTCCCCTTTCCTTTCCTGTAGAAAAAAATGTTTGACATATTATATATTTTATT
TAATGCTTGCAATGGGG
>TRINITY_DN115905_c5_g4_i2 from sample A1 / Example unspliced isoform:GGCGGAATTTCCAAAATCACAAAATCGACTCTCATATCGTCTTGTAATGGAAGTGGATTTTGATGGTTGATGTGTGAGCAAGCAAATGGTTGGAATATTAGTTAGTGAAGATTCATCTCAACAAGTCAAACTCAACCAGGGTTTTAACTTTTCCCTAGGTACGATAACCTTTTACTGTGGTGAATCTGGTTGTACTTACT
TCTGCCGGACAGGAACCACAATGTCCTCGTTGTTCTCGCTCAAGAGCCAGAGGGAGTGGAACTGGGAATGGAAGATGACTCAGGCGATCTTCGGCAAAACCCTTAATTCGATACCCTTCAGAGCAGCCCAGCCTAGCACAGCACAGGCGAGgtatgtaattgattgctgttagataattcttatgttgtttgcttaacat
gctgtgatgctcgccttgctttcacctggttaattaataagatccatcccgggacatgggaaaggggaagggaagatggaacccgttgttgtactcaattcaatggcgattgttttatggaattgaaatcgaaaggaggagttaatggctgaatcagagggtttagggttcgattccagggagggtctaggggcacctgc
tgcatcgtcgttgcctccccggaagcgtctgcttgcgggtttgaagaagcagcagcagccaaatggatggctgtcttcctcttcttcttcttattcttcatctccttcagcgtccactgtcgtgaattccccatctccagcctcagccccagcccctgcagcccttgaagggttgaagaagcagcagcatcaaaatggat
ggctgtcttcctcatcttcttcttattcttcatctccttcagcgtccactgtcgtgaattccccatctccagcctcagccccagcccctgcagcccttgaagggtcagggaacccaaatttgaaatccccccaggagattgcagaaacatccaaagctgcagctttggccgctgcagaggtcgctgctgctgccaagaga
gttgctgttgaaaaagctgcggtagctgtgaaggcggctactgccgccaaggctgccctagaattggcagcttctgcagcagccagggaagaaatggagggcagagggttttgtgttaacataaaaagcaaacctactaaaaagaagcatgtgcccatcgaacttctttataaaggggaacaaattgagacaggaggtgc
cgaggaagaggaggaggaagagagagcgcctacagtgctgctgcgttgtaaacgtaacgctgtgaaggcgaagcatgaacctatcaagctttcatacaaaggaaaaaggatcgagacaaagggagtgaaagataatgcaaacacagaagtgatgccgcattcgttaaacgacgaggaattggcacgtcagctgcaccgtg
ctatcaacagctctccgaggatttctaggaatatggggcacttggatgcacgccatcattcagaaaaacaaatggactataatttatgctccccatcttctagtcctgttagtccatctaagaaatctgatcgtcagaccctgaggtttgtatctactttacaagctgtggtttctgatgcacagcatggtttagaagag
cttggagtctgtgcttacagtaaggctgttacaagtaatgtaaatgattggtcctcagaggcagaggtctgtaatttggacaaagtggcagaaacagtttctgaagctatggaggaagagaattttgaatcgagaaagaacaagctagaggtatctaaaatggaggaagaagctagttgttctttgcgatgtaatggacc
cgctgcagatcagcatgatttagacattaaggatgccactagtgtgaataaaggaggacttaaaagaaaaaagacttcattaaatacttggaatattgaagaatgtggagaagctgggttatctaagtgtagcaggactcaaattcattctggaaatcatcaagaggactgtctaggtcagagaactgaaggttctcctt
taactgatgagagcacactgagatcacatgctaagcgatctaacatgaggcgtaatttggagaggaggacaaagtctatatctgaagatttcccccaggaaagtgatctttcagtggaagcaacatcaacttgtcgtagggatatacttaaaccagatcaaaaatttgcaggcagtgtgaatttatcttctacccaatta
agccactgtctgcctcccaaaactcctatcttcacaagtagatcagcaaggcggcgcacttgattattgcagATCAATCTTCATTCTCCTCCACACTTTCCTCTCGATCCTTTGGACTATTGTATTGAAATGGCAGAGGTGGTTCTATAAATTGAGGTCTTGTGTTCAAGGTATACGCATTTCAGGTTTTAGTTGTTACA
TATTTTAAGTAATAAAGCTTCTTACAAGACTGCAAGCGGTTAATGGGATATCCAGTGATGTGAACTTCTGGTTTACATATTTGAAAGGAACGTCATGAAAAAGCTTGTATAGTTGGCATGTCCTAGCTAACATACCAATCTATCTGTTTATGTCAAGTAAGATGTCACATCTAGTGTTTTGTTTTCTAGAACAGCAGCAG
TTTTGGAAGCCTCTTGCAGTATTTACAGTTTAGAATCAGTTTTTTCCCTGTGGTTTTCCTCCTCATGTATTTTAGATATGTGCTGACATTCTTTGACAGCAGCACATTGCATAATTTAGTTGGAAGGTAGGATCATGCAACGTCATTGACGTTATTACCTTGTATTGTAGACTGCCAATGCCTATGTACATAACTACTGT
ATCATTGTTGAAGTTCAGAACGGCCCAATGAGGTATTCCTCCATTTTTTTGGGTGGATACTGTAGCCATTCCCCTTTCCTTTCCTGTAGAAAAAAATGTTTGACATATTATATATTTTATTTAATGCTTGCAATGGGG