NA ----> NA
Intron 1 GTGAGTCATG ... GTATACCCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 6 | 2 | 6 |
| A2 | 41.67 | 7 | 7 | 3 |
| A3 | 27.27 | 8 | 2 | 4 |
| A4 | 53.85 | 3 | 4 | 3 |
| A5 | 33.33 | 2 | 1 | 1 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | 33.33 | 4 | 0 | 4 |
| A9 | 100 | 0 | 2 | 0 |
| A10 | 28.57 | 5 | 3 | 1 |
>TRINITY_DN112392_c0_g1_i9 from sample A1 / Example spliced isoformGAAGCAGACAAATAAAAAGCTTTTGAGTTCTTCAAAGGCAACGATAAACTTCTCTACAAATATATCCATTTCAAAGAACATTCAGGCATTTGCCGAGCAGAAAAATACATCCTTGTCCCCTTTGCCCCCTCTGAAAAGAAAACCAATGGAGAAGATGATATCGGGGAAGATTTTCTCAGCTCTTGGAAGCCGAGTGTGCT
GAAAAATGATGTTGGATTGGATTTTGGTAATGACACCTCACCAAAAGCTAAAAAAAGCAGTTTCTCATTGGATAAATTTGATGTGGATTTTGATTTTGATGGAGGATTTGGGAAGTTCTCAACATTCAATGTTGACATGTCTGACCTTGATTTTCGGAGTCCATCAAGCAAGACACAGAAGTCCAAGTCTAAGATTCAAG
AAAATTCACTAGAGAAAAAGGAAGCAAAGGGCGACAGTTTTAAATTTGAATTTGATTTCAAAGGGTTGGATGGGTTTGATCTTGATTGTCCTCTGCTGAAGGGGAAGGAAGAGACTAAAATCCCTGAACATGAAAAACTGTCAATGGTTTCTGATGAAAGCATTGAAATTGCCTCTAAAAGTAAAAGCAAGGTTTTGTCT
AAAGCTATTAACAATAATTCCGAGGGCAATGAGGATGGAACAGTGCCAAGAGGACAAAGAGTTGCACATTCAAAGTTTAGGCTACCTGAACTAAATATGGAAGAGGTAGAATCCCAAGAATTTGCTCCTAAATGCTTGGAAATATCACCTGGCACAAGTGGCTCTCAGGATATTGAAACAAAGCCAGAGAAGCAAACTAC
TGCAGAAAAACAAGAATTTGCTCCTAAATGCTTGGAAATATCACCTGGCACAAGTGGCTCTCAGGATATTGAAACAAAGCCAGAGAAGCAAACTACTGCAGAAAAACAAGAGGTTGTAGACACATCTTTTGTTAACTCAGTCCAAACAGGTGGTTTGTGTATCATAAAAGAGGGATTTAATCCATTGGAATCCAAGCACC
CAGACAATGTTTCGTCATCAAAAACTTCATCGTTGAGCTCAGGTTCTGGAGAAAAGGTATCATTGCAGAATGCCTCGTCAACTGAAGACAGACTTACTTTAAAGGATTCTCGAAGAGACCAACTGCAGTCCTTAGCTGAAGGGTTTGTTCCCAAATGCTTGGAAATATCACTTGTCA
>TRINITY_DN112392_c0_g1_i14 from sample A1 / Example unspliced isoform:CCGGGAGATTGGAACTGACTCAGAGAAGCAAACTATTGCAACCAAGCAAGATAATTTAGACACATCTTTTGATAACTTGTTCCAAACAGGTGGCTCAAATACCATGAAGAAGACATTTAATCCAATGGAATCCAAACACCCAGACAATGTTTCGTCATCAAAAACTTCATCTTTCCACTCAGCTTCTGGAGAAAAAGTAT
CATTGCAGAATGCCTCACCAATGAAAGACACACTTGCTTTAAAGGATTCTCTAGAGGAGCGACAGCAATCCTTAGCCAAAACTGGTCCTCACCATACAGAAATGCCAGAGTCTGATTCAAGTACTAAGGATTCAAGCCCCTTGAGAAATGAATGCTCCAAATGGAGTTCTGACAAATGTGCGCCAGGAAGCATCTTAAAG
AGTTCTGATACACGCAGTGGTAAGAAGGTACCCATCGATAGGTTAAATACTTTGGTTCAGAAGGATATGGATGATAACAATGAAAGACATATGAATCAATGTCAGAATCCCGAAGCTTCTGGAGAACATCAATATACACCGTCGAAAACTTCTTTTCCGATAATGCAGAGAGAAATCACAACCCGGAAACCTGTTACAAC
ATCAAAACATAAATTGTATCTTAAGGAGAGCATTGGCAATCAAACCACGAGAGAGGAACCTAAAGCCATGACTGAGGCACTGGTTTCAACAAGATGATATCGGGGAAGATTTTCTCAGCTCTTGGAAGCCGAGTGTGCTGAAAAATGATGTTGGATTGGATTTTGGTAATGACACCTCACCAAAAGCTAAAAAAAGCAGT
TTCTCATTGGATAAATTTGATGTGGATTTTGATTTTGATGGAGGATTTGGGAAGTTCTCAACATTCAATGTTGACATGTCTGACCTTGATTTTCGGAGTCCATCAAGCAAGACACAGAAGTCCAAGTCTAAGATTCAAGAAAATTCACTAGAGAAAAAGGAAGCAAAGGGCGACAGTTTTAAATTTGAATTTGATTTCAA
AGGgtgagtcatggacgagttattgcagtcttcctttgcaattaatgtataatcttagaaaggacttgcacccattctttttaatcaagtttatccattctagcttaaattctaatgatttgagagagcagaaccatactgatagtaaaattaatagagaacgtgactgtgaatcctcttcaagtttttctttgggaatc
ttaatcattgatgtatacccagGTTGGATGGGTTTGATCTTGATTGTCCTCTGCTGAAGGGGAAGGAAGAGACTAAAATCCCTGAACATGAAAAACTGTCAATGGTTTCTGATGAAAGCATTGAAATTGCCTCTAAAAGTAAAAGCAAGGTTTTGTCTAAAGCTATTAACAATAATTCCGAGGGCAATGAGGATGGAACA
GTGCCAAGAGGACAAAGAGTTGCACATTCAAAGTTTAGGCTACCTGAACTAAATATGGAAGAGGTAGAATCCCAAGAATTTGCTCCTAAATGCTTGGAAATATCACCTGGCACAAGTGGCTCTCAGGATATTGAAACAAAGCCAGAGAAGCAAACTACTGCAGAAAAACAAGAATTTGCTCCTAAATGCTTGGAAATATC
ACCTGGCACAAGTGGCTCTCAGGATATTGAAACAAAGCCAGAGAAGCAAACTACTGCAGAAAAACAAGAGGTTGTAGACACATCTTTTGTTAACTCAGTCCAAACAGGTGGTTTGTGTATCATAAAAGAGGGATTTAATCCATTGGAATCCAAGCACCCAGACAATGTTTCGTCATCAAAAACTTCATCGTTGAGCTCAG
GTTCTGGAGAAAAGGTATCATTGCAGAATGCCTCGTCAACTGAAGACAGACTTACTTTAAAGGATTCTCGAAGAGACCAACTGCAGTCCTTAGCTGAAGGGTTTGTTCCCAAATGCTTGGAAATATCACTTGTCA
Intron 2 GTAAGTAAAA ... TTCTGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.18 | 10 | 7 | 1 |
| A2 | 30 | 14 | 6 | 4 |
| A3 | 53.85 | 12 | 14 | 0 |
| A4 | 23.53 | 13 | 4 | 1 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 0 | 2 | 0 | 0 |
| A8 | 41.67 | 7 | 5 | 0 |
| A9 | 22.22 | 7 | 2 | 0 |
| A10 | 0 | 5 | 0 | 0 |
>TRINITY_DN112392_c0_g1_i14 from sample A1 / Example spliced isoformCCGGGAGATTGGAACTGACTCAGAGAAGCAAACTATTGCAACCAAGCAAGATAATTTAGACACATCTTTTGATAACTTGTTCCAAACAGGTGGCTCAAATACCATGAAGAAGACATTTAATCCAATGGAATCCAAACACCCAGACAATGTTTCGTCATCAAAAACTTCATCTTTCCACTCAGCTTCTGGAGAAAAAGTAT
CATTGCAGAATGCCTCACCAATGAAAGACACACTTGCTTTAAAGGATTCTCTAGAGGAGCGACAGCAATCCTTAGCCAAAACTGGTCCTCACCATACAGAAATGCCAGAGTCTGATTCAAGTACTAAGGATTCAAGCCCCTTGAGAAATGAATGCTCCAAATGGAGTTCTGACAAATGTGCGCCAGGAAGCATCTTAAAG
AGTTCTGATACACGCAGTGGTAAGAAGGTACCCATCGATAGGTTAAATACTTTGGTTCAGAAGGATATGGATGATAACAATGAAAGACATATGAATCAATGTCAGAATCCCGAAGCTTCTGGAGAACATCAATATACACCGTCGAAAACTTCTTTTCCGATAATGCAGAGAGAAATCACAACCCGGAAACCTGTTACAAC
ATCAAAACATAAATTGTATCTTAAGGAGAGCATTGGCAATCAAACCACGAGAGAGGAACCTAAAGCCATGACTGAGGCACTGGTTTCAACAAGATGATATCGGGGAAGATTTTCTCAGCTCTTGGAAGCCGAGTGTGCTGAAAAATGATGTTGGATTGGATTTTGGTAATGACACCTCACCAAAAGCTAAAAAAAGCAGT
TTCTCATTGGATAAATTTGATGTGGATTTTGATTTTGATGGAGGATTTGGGAAGTTCTCAACATTCAATGTTGACATGTCTGACCTTGATTTTCGGAGTCCATCAAGCAAGACACAGAAGTCCAAGTCTAAGATTCAAGAAAATTCACTAGAGAAAAAGGAAGCAAAGGGCGACAGTTTTAAATTTGAATTTGATTTCAA
AGGGTGAGTCATGGACGAGTTATTGCAGTCTTCCTTTGCAATTAATGTATAATCTTAGAAAGGACTTGCACCCATTCTTTTTAATCAAGTTTATCCATTCTAGCTTAAATTCTAATGATTTGAGAGAGCAGAACCATACTGATAGTAAAATTAATAGAGAACGTGACTGTGAATCCTCTTCAAGTTTTTCTTTGGGAATC
TTAATCATTGATGTATACCCAGGTTGGATGGGTTTGATCTTGATTGTCCTCTGCTGAAGGGGAAGGAAGAGACTAAAATCCCTGAACATGAAAAACTGTCAATGGTTTCTGATGAAAGCATTGAAATTGCCTCTAAAAGTAAAAGCAAGGTTTTGTCTAAAGCTATTAACAATAATTCCGAGGGCAATGAGGATGGAACA
GTGCCAAGAGGACAAAGAGTTGCACATTCAAAGTTTAGGCTACCTGAACTAAATATGGAAGAGGTAGAATCCCAAGAATTTGCTCCTAAATGCTTGGAAATATCACCTGGCACAAGTGGCTCTCAGGATATTGAAACAAAGCCAGAGAAGCAAACTACTGCAGAAAAACAAGAATTTGCTCCTAAATGCTTGGAAATATC
ACCTGGCACAAGTGGCTCTCAGGATATTGAAACAAAGCCAGAGAAGCAAACTACTGCAGAAAAACAAGAGGTTGTAGACACATCTTTTGTTAACTCAGTCCAAACAGGTGGTTTGTGTATCATAAAAGAGGGATTTAATCCATTGGAATCCAAGCACCCAGACAATGTTTCGTCATCAAAAACTTCATCGTTGAGCTCAG
GTTCTGGAGAAAAGGTATCATTGCAGAATGCCTCGTCAACTGAAGACAGACTTACTTTAAAGGATTCTCGAAGAGACCAACTGCAGTCCTTAGCTGAAGGGTTTGTTCCCAAATGCTTGGAAATATCACTTGTCA
>TRINITY_DN112392_c0_g1_i12 from sample A1 / Example unspliced isoform:TTTAAATTTGACAGTCTCACACAAGAGCGGAGAGTTGTATGATTCGAAAACAATAACGAGTTCAAGCCATTTCTGCAGTGCAAAGGGCGTCGAATGGTTTCCATCGGAGAAGATTTCAACTGGTCGTTGCATAAATAAAAGGAAATATTTCTTTTTAGCGCAGGAAGGAAGATTTTCAACCAGATCCCTAGCCATTTTAC
TCCTCAAATTGCACTTCTTTTGTAAAATAACCAGCCAACTTTCGATCAAGCAGGGATTACACTTCAGGTTTGATCGAGGCGCACAGTTTGCAATCATGTCTCAATCCCACGAAGCAGCCGCTAAGAAGAATGATTTAATGCAAACAAAGAAGATCTTTGAAGATGATATCGGGGAAGATTTTCTCAGCTCTTGGAAGCCG
AGTGTGCTGAAAAATGATGTTGGATTGGATTTTGGTAATGACACCTCACCAAAAGCTAAAAAAAGCAGTTTCTCATTGGATAAATTgtaagtaaaattaaatcattagaaagctttctctttacataattgacagtggagattttagggttataattgttcatttgttatggattccttgctacaaacatgataattttt
tttctttgaaaagtagaggctgtggagtggactaggccatgatcggatgatttgttgatattttaccaggaagcaatttcctagggtacttttcattaagctgactcctaaaattgttttgaattcacttgctttctgcccagTGATGTGGATTTTGATTTTGATG