NA ----> NA
Intron 1 GTATGTATGA ... ATTTGTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 3 | 0 | 3 |
| A2 | 50 | 1 | 2 | 1 |
| A3 | 50 | 2 | 1 | 2 |
| A4 | 0 | 2 | 2 | 0 |
| A5 | 100 | 0 | 0 | 4 |
| A6 | 33.33 | 4 | 0 | 2 |
| A7 | 45.45 | 6 | 2 | 5 |
| A8 | 60 | 2 | 0 | 3 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 50 | 2 | 0 | 2 |
>TRINITY_DN32885_c0_g1_i3 from sample A9 / Example spliced isoformCGTTTACATTCCGTGAAGGATGATGATCCCGCCGTTTATTGCATCATTCTTTTGTTGCTCTTTCCTCAACCACGAGGCTCCCACTGCCACATGCTTTTGCCTTAATTTCTTATTTTAACGACTTAAGACCTTTCGCTCCCCTCCTCTTCCGCTCTGGTATACTGCTTCTTTTTTAACCGTTGTCCAAAGTGTGATTGATA
GATGCTTCCGAGGCACAATTTTGAAACAAGCCTCTCCTGAATTCGGCATCCAGATCTCTGTTTCTTCGCATTATCCGATTTGGGTTGGGCTGTGTTGCTCCTTTTCTCAAACCCAACGACAATCCTCCGGTTTTGGAATTGTTTTAAGCAGATTGCAGAGTGATTAGGATGATTACAAATACAAGACTTGAAATCTGTAT
GAGGAATATTTAGATGGGATTCTTTAATTTATATTTGAGTTGAAGGGTGATCTTGAAGAATGGGTATGGACTAGGTTTTTCCTCTAAGGAGTTTGTCCAGTTTGTTCGTGTGCATTGAAGTGTTCATTTTCCGTGTGTGTATGTGTTTATAGCAGAGCAGTTGGTGAGATCCTGTGAGTAGATCTAGGCAGTTACATACA
AAAGGCATTCTAAGGGTATTGAATGAACCCACAGGTATATATGAAAGCATCGAGAACTGCACGGCCAAGTTGCGGATTGTGCCATCGCCTTGGACCTTTTGTGGAATCGAAGTCCATTAAGCTGGAACGTTCAGTGGGCAGCTGCACGACCTTGGGGTGTCGAAAACTGGACCGGCTAGCAGGATGGGTAGGGGCCAGTG
TGGCCTCTGCCTTTTTTGCATCACTGGAACGGTGCTCCTGTATCAACCTTAGCACAACCGATACTGAAGATGACGAGGAAGGCAAGGACATGCCCTTGATCCCCATAAAAGCTAATCATGTTGAAGAAGAACAAGTCGAAAAACACAAAGCCAATAAGAAAACCTTTTTTGGAAAGAAGAGTGACAAAGATGGGGAAGAG
ATGTTGCAAAATGCAGAAAATTCAGTATAGTATACTGTATAATTCTGGTCTTGTCTTTGTCTCAGTCTGGATCCTGTATCAAAGAAGTATGCTAGTTCTATTGCAGAATTTGGCATTGTTTACATAAGATGTACACGAATTATAGAGAGTTTTGGCATTGCTATTGTTTGGGCTGAAGGGATTTATCATTTGGCACTTTT
CAGTGGAACATTGTGTGTATGATCAGGTTACTTCTCTATATGTAGTTTTGAGTATTTAAGAGTCGCTGCTACTAGCTTCCAAATATCGAAGCTTTTGTGGATGACCATTTCAGAATATCTGTTTGATTATTGAATGCTTAGTTCAAAGCCTGATCAAAGAAACTATCTCTATTTCAATCTAGAACTTCAAAATGGTCAAC
AGACTCTAGGTCATTCCAAAGTCTTCAGGCTCAATTTCATTCCAAAAGTTTGTAATGGGCTGCAACTTTCAGTTTTTCTATTGTAATATTTCTATTTTCTGGGTGAAAAAGTAATATCTATAACATGAGCATCTCCCGACTTTCA
>TRINITY_DN32885_c0_g1_i4 from sample A9 / Example unspliced isoform:CGTTTACATTCCGTGAAGGATGATGATCCCGCCGTTTATTGCATCATTCTTTTGTTGCTCTTTCCTCAACCACGAGGCTCCCACTGCCACATGCTTTTGCCTTAATTTCTTATTTTAACGACTTAAGACCTTTCGCTCCCCTCCTCTTCCGCTCTGGTATACTGCTTCTTTTTTAACCGTTGTCCAAAGTGTGATTGATA
GATGCTTCCGAGGCACAATTTTGAAACAAGCCTCTCCTGAATTCGGCATCCAGATCTCTGTTTCTTCGCATTATCCGATTTGGGTTGGGCTGTGTTGCTCCTTTTCTCAAACCCAACGACAATCCTCCGGTTTTGGAATTGTTTTAAGCAGATTGCAGAGTGATTAGGATGATTACAAATACAAGACTTGAAATCTGTAT
GAGGAATATTTAGATGGGATTCTTTAATTTATATTTGAGTTGAAGGGTGATCTTGAAGAATGGGTATGGgtatgtatgagagagattcagaggaaatgaatctgtgtgagagatttagaagaaaagtacctgtgttccttcagagatgatatatcagtctgttacttgcataggttcgaaactgatcccattaccatcag
tatcacccatacttactttgtccacttttccatttccacagcgtctctgtatctgtttgtgtgcaagccaagatacattttgttgtcagattcccaatttcttctgttgtgttgtatttccaccctctgaagaagataagcttaccatacccagcaataccaccgactgccatattgtttagtaacagtgcaagtatatc
atcacctggcccatcccagctggaattttctgggttataccttgcagattgggattcatctgtaccaatattgtgtgaagaaatggaatttattggcctatatgtgcatatttgacaatacattttcgtttttcattcttggacacgcagagagttgtctgatttgcttgcgtgcagttaactgtatatatttcgtgtat
gcatatactcctaaccctcgtatggaaaaaaattggctgtatttgtgcagACTAGGTTTTTCCTCTAAGGAGTTTGTCCAGTTTGTTCGTGTGCATTGAAGTGTTCATTTTCCGTGTGTGTATGTGTTTATAGCAGAGCAGTTGGTGAGATCCTGTGAGTAGATCTAGGCAGTTACATACAAAAGGCATTCTAAGGGTAT
TGAATGAACCCACAGGTATATATGAAAGCATCGAGAACTGCACGGCCAAGTTGCGGATTGTGCCATCGCCTTGGACCTTTTGTGGAATCGAAGTCCATTAAGCTGGAACGTTCAGTGGGCAGCTGCACGACCTTGGGGTGTCGAAAACTGGACCGGCTAGCAGGATGGGTAGGGGCCAGTGTGGCCTCTGCCTTTTTTGC
ATCACTGGAACGGTGCTCCTGTATCAACCTTAGCACAACCGATACTGAAGATGACGAGGAAGGCAAGGACATGCCCTTGATCCCCATAAAAGCTAATCATGTTGAAGAAGAACAAGTCGAAAAACACAAAGCCAATAAGAAAACCTTTTTTGGAAAGAAGAGTGACAAAGATGGGGAAGAGATGTTGCAAAATGCAGAAA
ATTCAGTATAGTATACTGTATAATTCTGGTCTTGTCTTTGTCTCAGTCTGGATCCTGTATCAAAGAAGTATGCTAGTTCTATTGCAGAATTTGGCATTGTTTACATAAGATGTACACGAATTATAGAGAGTTTTGGCATTGCTATTGTTTGGGCTGAAGGGATTTATCATTTGGCACTTTTCAGTGGAACATTGTGTGTA
TGATCAGGTTACTTCTCTATATGTAGTTTTGAGTATTTAAGAGTCGCTGCTACTAGCTTCCAAATATCGAAGCTTTTGTGGATGACCATTTCAGAATATCTGTTTGATTATTGAATGCTTAGTTCAAAGCCTGATCAAAGAAACTATCTCTATTTCAATCTAGAACTTCAAAATGGTCAACAGACTCTAGGTCATTCCAA
AGTCTTCAGGCTCAATTTCATTCCAAAAGTTTGTAATGGGCTGCAACTTTCAGTTTTTCTATTGTAATATTTCTATTTTCTGGGTGAAAAAGTAATATCTATAACATGAGCATCTCCCGACTTTCA
Intron 2 GTATGTATGA ... ACTTGCATAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 3 | 2 | 5 |
| A2 | 75 | 1 | 2 | 3 |
| A3 | 50 | 2 | 0 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 42.86 | 4 | 1 | 3 |
| A7 | 40 | 3 | 0 | 2 |
| A8 | 50 | 2 | 0 | 2 |
| A9 | 100 | 0 | 0 | 1 |
| A10 | 50 | 2 | 0 | 2 |
>TRINITY_DN32159_c0_g1_i3 from sample A6 / Example spliced isoformATGGGATTCTTTAATTTATATTTGAGTTGAAGGGTGATCTTGAAGAATGGGTATGGACTAGGTTTTTCCTCTAAGGAGTTTGTCCAGTTTGTTCGTGTGCATTGAAGTGTTCATTTTCCGTGTGTGTATGTGTTTATAGCAGAGCAGTTGGTGAGATCCTGTGAGTAGATCTAGGCAGTTACATACAAAAGGCATTCTAA
GGGTATTGAATGAACCCACAGGTATATATGAAAGCATCGAGAACTGCACGGCCAAGTTGCGGATTGTGCCATCGCCTTGGACCTTTTGTGGAATCGAAGTCCATTAAGCTGGAACGTTCAGTGGGCAGCTGCACGACCTTGGGGTGTCGAAAACTGGACCGGCTAGCAGGATGGGTAGGGGCCAGTGTGGCCTCTGCCTT
TTTTGCATCACTGGAACGGTGCTCCTGTATCAACCTTAGCACAACCGATACTGAAGATGACGAGGAAGGCAAGGACATGCCCTTGATCCCCATAAAAGCTAATCATGTTGAAGAAGAACAAGTCGAAAAACACAAAGCCAATAAGAAAACCTTTTTTGGAAAGAAGAGTGACAAAGATGGGGAAGAGATGTTGCAAAATG
CAGAAAATTCAGTATAGTATACTGTATAATTCTGGTCTTGTCTTTGTCTCAGTCTGGATCCTGTATCAAAGAAGTATGCTAGTTCTATTGCAGAATTTGGCATTGTTTACATAAGATGTACACGAATTATAGAGAGTTTTGGCATTGCTATTGTTTGGGCTGAAGGGATTTATCATTTGGCACTTTTCAGTGGAACATTG
TGTGTATGATCAGGTTACTTCTCTATATGTAGTTTTGAGTATTTAAGAGTCGCTGCTACTAGCTTCCAAATATCGAAGCTTTTGTGGATGACCATTTCAGAATATCTGTTTGATTATTGAATGCTTAGTTCAAAGCCTGATCAAAGAAACTATCTCTATTTCAATCTAGAACTTCAAAATGGTCAACAGACTCTAGGTCA
TTCCAAAGTCTTCAGGCTCAATTTCATTCCAAAAGTTTGTAATGGGCTGCAACTTTCAGTTTTTCTATTGTAATATTTCTATTTTCTGGGTGAAAAAGTAATATCTATAACATGAGCATCTCCCGACTTTCATGTCCA
>TRINITY_DN32159_c0_g1_i4 from sample A6 / Example unspliced isoform:ATGGGATTCTTTAATTTATATTTGAGTTGAAGGGTGATCTTGAAGAATGGGTATGGgtatgtatgagagagattcagaggaaatgaatctgtgtgagagatttagaagaaaagtacctgtgttccttcagagatgatatatcagtctgttacttgcatagACTAGGTTTTTCCTCTAAGGAGTTTGTCCAGTTTGTTCGT
GTGCATTGAAGTGTTCATTTTCCGTGTGTGTATGTGTTTATAGCAGAGCAGTTGGTGAGATCCTGTGAGTAGATCTAGGCAGTTACATACAAAAGGCATTCTAAGGGTATTGAATGAACCCACAGGTATATATGAAAGCATCGAGAACTGCACGGCCAAGTTGCGGATTGTGCCATCGCCTTGGACCTTTTGTGGAATCG
AAGTCCATTAAGCTGGAACGTTCAGTGGGCAGCTGCACGACCTTGGGGTGTCGAAAACTGGACCGGCTAGCAGGATGGGTAGGGGCCAGTGTGGCCTCTGCCTTTTTTGCATCACTGGAACGGTGCTCCTGTATCAACCTTAGCACAACCGATACTGAAGATGACGAGGAAGGCAAGGACATGCCCTTGATCCCCATAAA
AGCTAATCATGTTGAAGAAGAACAAGTCGAAAAACACAAAGCCAATAAGAAAACCTTTTTTGGAAAGAAGAGTGACAAAGATGGGGAAGAGATGTTGCAAAATGCAGAAAATTCAGTATAGTATACTGTATAATTCTGGTCTTGTCTTTGTCTCAGTCTGGATCCTGTATCAAAGAAGTATGCTAGTTCTATTGCAGAAT
TTGGCATTGTTTACATAAGATGTACACGAATTATAGAGAGTTTTGGCATTGCTATTGTTTGGGCTGAAGGGATTTATCATTTGGCACTTTTCAGTGGAACATTGTGTGTATGATCAGGTTACTTCTCTATATGTAGTTTTGAGTATTTAAGAGTCGCTGCTACTAGCTTCCAAATATCGAAGCTTTTGTGGATGACCATT
TCAGAATATCTGTTTGATTATTGAATGCTTAGTTCAAAGCCTGATCAAAGAAACTATCTCTATTTCAATCTAGAACTTCAAAATGGTCAACAGACTCTAGGTCATTCCAAAGTCTTCAGGCTCAATTTCATTCCAAAAGTTTGTAATGGGCTGCAACTTTCAGTTTTTCTATTGTAATATTTCTATTTTCTGGGTGAAAA
AGTAATATCTATAACATGAGCATCTCCCGACTTTCATGTCCA