NA ----> NA
Intron 1 GTCTGGCTCC ... TTTGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.86 | 56.6 | 10 | 5 |
| A2 | 11.71 | 20.8 | 1.9 | 3 |
| A3 | 19.71 | 22.6 | 5.8 | 5.7 |
| A4 | 1.65 | 21.7 | 3.6 | 0.4 |
| A5 | 1.96 | 13.3 | 3.1 | 0.3 |
| A6 | 2.67 | 34.9 | 6 | 1.3 |
| A7 | 5.45 | 69.6 | 9.1 | 4.7 |
| A8 | 2.12 | 63.8 | 5.3 | 1.8 |
| A9 | 2.19 | 91.3 | 10.7 | 2.7 |
| A10 | 1.71 | 62.2 | 8 | 1.3 |
>TRINITY_DN121498_c0_g1_i6 from sample A1 / Example spliced isoformTGAAGTCCTGTGGGAAGGCAATTTATCTAGAGCTAGATGCAAAAGCATGTCTTTAAATTAAGTGTGTAGAGTATTTAATGCATGATTTGAGCAGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGA
AATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGCGCTTGAGAGAAATTCTTGATAAACAGGCAGAATTAGGCATTCAAGTAGCTGAAGTACCAGATCATT
ATGTGAAGGACAGTTGGGATCACCAGAAGGGGCACCATAAAAGTGGTCAGCATGGTCACTTTCGTCAAGATTCGTTCGCATCTAGAAAGGTTCCAAATAATAACAATTTTCCGAATTCAAAGAAGTCTCGATCAAATGAGAATGGTGAAAGCAATGAAGTGGGATCAGATGACACAGCCGTGAAGGTACCACGACTCGAG
GATTTAACATCTCCAAGGTCTGTACTGAATGATGCCAGTGATTTCAAGGTGAAACAATCCACAGAATCAATTGACACAGTTAACCCTGCTTCTGGTATTCGATGCACTGAAACTACTCCCTTGCCTCCAGGAGTGGATAAAAGTGACAAGGGAGTCTTGGGCAGTGCTCCACGGAATGATATAATCACAAATGTGGACAT
GCAGCTTCAGCACAATGATGGTAAAAAGTTCCACAAAGTCCAAAGTATTTGTCGATATTTCCAAAAGGGATTTTGTAGAAAAGGTCAAAGATGTCACCACCTTCATGTCCAGATGTCAAATGACAGTCATAATCAAACTAGTTTGGCTTCTAAGTATTCAAAAAGAGAACCCACACTTTTAGAAAAACTTCTAAGTCCAG
AAATAAAGAGGGAAAAAAGCCACTTACTGCAGATTTTCAGATTTATGGTGAACAATTCTTTTTTCAGTGAATGGCCAAATAAGTCTTTGAATTTTTTTCAGTGGTCTGGGGAAGCATCAAATGTAAATCCAGAACAGGCTGAAAGCCTGCATCTGTCTCATTTAAGTTCAATTATTGGCATTGATGAAGTGCACACACAA
TTAGATGAAGATGTTGTTCATAAAAAGATTGGCGTAGATGAGACAGAGAGCAGCAGTCACGAAGACATTGAGGAGGGAGAGATAGTGGAGGGGGAGATTGAATAGAAACGTTGAGAAAACAGGTTCACACATTATTCCATTCAAAAAAGTGATGAGAATTATAATCTGGCTATTATAGGTCTTCCAATACTCCAATCTTG
AGATCCGATGGACAACTGGACAGAGTTCTTAATAGTCAGTCATGCTTACTGTTGTATGCCAGTTTAAGTTTTGCTTACTTATGGATGTATATTATATGTTGTAGTGAATATTATCCTGTATGATTTGACATTTCTCCATGTATGATGGGCTTGTGTTTTGCCCTGATTTTCCGTCCTGTGAAATCATTACATATACACTC
GTCACTTGATATTGTCTAATATTTGTATATGTATACAAAGTTCTGGTCTATCTCATATGCAATTTTCATTTCAAACTATACATTACTAAGCGC
>TRINITY_DN121498_c0_g1_i4 from sample A1 / Example unspliced isoform:TGAAGTCCTGTGGGAAGGCAATTTATCTAGAGCTAGATGCAAAAGCATGTCTTTAAATTAAGTGTGTAGAGTATTTAATGCATGATTTGAGCAGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGTAAAGTGTGTTCTGATCTGATGCAGGGAGGGA
TGTCGTTTTGTAATATCTCTTGAATGGCTTCAACAATTTTCTGTGGAAGTTCTTATTTTCTCAATTTGTAAATTTTCATCTCATGGATAATATTATGATATATAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCA
AGgtctggctccatgcttgacatgactgaatatgttgtagttattcaatttgctggttgactgaattattttggttcagGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGGTGGGTAGCTACAACTTACCAGTTGAACCCTTCATTTTTTAATGTATACAAA
TCTGTTCAACTAATAGATGTAAATATTTGATTCAGAGATCACTACTCCCTCTGAATCACCCAGAGATCTGAAGTGGTTTGAGTCCCGATATCAAT
Intron 2 GTTCTGCTAT ... TTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.21 | 7 | 25 | 8 |
| A2 | 52.94 | 12 | 20 | 7 |
| A3 | 58.62 | 12 | 17 | 17 |
| A4 | 73.33 | 8 | 36 | 8 |
| A5 | 45.83 | 13 | 16 | 6 |
| A6 | 51.11 | 11 | 5 | 18 |
| A7 | 59.72 | 29 | 36 | 50 |
| A8 | 63.64 | 10 | 15 | 20 |
| A9 | 54.8 | 40 | 38 | 59 |
| A10 | 52.73 | 39 | 52 | 35 |
>TRINITY_DN98947_c0_g1_i5 from sample A5 / Example spliced isoformGTAAAGGCGTAGGTTCACTTCGCCATTTTTATAATTTAAAATAGAACGACTTTCCATGGTGACAATATTAGCTTTAATCGTGAACAAAATATCGACTTAAAGTACGCAAACCTGAAAGAGTGCTTAAACCCTTGGGGTTTATGCAGAATCTACGGAGAAGACGGAGGCGCCGCTATAGCCCTGAGCTTCAGCAACTCGAT
ACGTTCACAGGCCGGAGCTTCACGAATTCTTTGCCAGAGTTTCAAATAACTCGGTAAACCGACTTTTTATTTTTCCCCACAAGTCTCTGAAAAACCAAGTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAAAGCATGCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCA
TACCAATCCCCAGGCTGGACCAACACCTCCTACATCTCCCTATCCACCTCCTGGTAATCTGTTGTTTCCCATGCAGAAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGTTGCTCAAAATCAATCTCAGATACCCAATCAACTACATTTTC
CCCACCCTCCTCACCCTCCCTACCCCCCTCCTATTCCCGAGCAAAAACATCTCACCTCACAATCTCTTCCTTCTGATGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGGTGCAAAATGTTGGAGAAATGTCACAAATGGCAGCTGCCCAT
TTAGCGGGCAACATAGTCTTCCAGGGTGGCGGGCAAGTCCCAATGCATCAAAATCATCAACCGCTGCAGCAAATCCAGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACTACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAG
AGGACTTTCATCGGGGAATGGTGGTCGAGACCTGGCTTCAGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTCAGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTAC
CCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTTCTAGGTTCCAGAAGAATATGGAAGGTGCAAGGTCATATGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCAAATGTGATGAGCCAGGCTGCTCATTTGATGCCTCTGGGAAG
ATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGA
GCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGCGCTTGAGAGAAATTCTTGATAAACAGGCAGAATTAGGCATTCAAGTAGCTGAAGTACCAGATCATTATGTGAAGGACAGTTGGGATCACCAGAAGGGGCACCATAAAAGTGGTCAGCATGGTCACTTTCGTCAAGATTCGTTCGCATCTAGAAAGGTTCCAAATA
ATAACAATTTTCCGAATTCAAAGAAGTCTCGATCAAATGAGAATGGTGAAAGCAATGAAGTGGGATCAGATGACACAGCCGTGAAGGTACCACGACTCGAGGATTTAACATCTCCAAGGTCTGTACTGAATGATGCCAGTGATTTCAAGGTGAAACAATCCACAGAATCAATTGACACAGTTAACCCTGCTTCTGGTATT
CGATGCACTGAAACTACTCCCTTGCCTCCAGGAGTGGATAAAAGTGACAAGGGAGTCTTGGGCAGTGCTCCACGGAATGATATAATCACAAATGTGGACATGCAGCTTCAGCACAATGATGGTAAAAAGTTCCACAAAGTCCAAAGTATTTGTCGATATTTCCAAAAGGGATTTTGTAGAAAAGGTCAAAGATGTCACCA
CCTTCATGTCCAGATGTCAAATGACAGTCATAATCAAACTAGTTTGGCTTCTAAGTATTCAAAAAGAGAACCCACACTTTTAGAAAAACTTCTAAGTCCAGAAATAAAGAGGGAAAAAAGCCACTTACTGCAGATTTTCAGATTTATGGTGAACAATTCTTTTTTCAGTGAATGGCCAAATAAGTCTTTGAATTTTTTTC
AGTGGTCTGGGGAAGCATCAAATGTAAATCCAGAACAGGCTGAAAGCCTGCATCTGTCTCATTTAAGTTCAATTATTGGCATTGATGAAGTGCACACACAATTAGATGAAGATGTTGTTCATAAAAAGATTGGCGTAGATGAGACAGAGAGCAGCAGTCACGAAGACATTGAGGAGGGAGAGATAGTGGAGGGGGAGATT
GAATAGAAACGTTGAGAAAACAGGTTCACACATTATTCCATTCAAAAAAGTGATGAGAATTATAATCTGGCTATTATAGGTCTTCCAATACTCCAATCTTGAGATCCGATGGACAACTGGACAGAGTTCTTAATAGTCAGTCATGCTTACTGTTGTATGCCAGTTTAAGTTTTGCTTACTTATGGATGTATATTATATGT
TGTAGTGAATATTATCCTGTATGATTTGACATTTCTCCATGTATGATGGGCTTGTGTTTTGCCCTGATTTTCCGTCCTGTGAAATCATTACATATACACTCGTCACTTGATATTGTCTAATATTTGTATATGTATACAAAGTTCTGGTCTATCTCATATGCAATTTTCATTTCAAACTATACATTACT
>TRINITY_DN98947_c0_g1_i1 from sample A5 / Example unspliced isoform:GTAAAGGCGTAGGTTCACTTCGCCATTTTTATAATTTAAAATAGAACGACTTTCCATGGTGACAATATTAGCTTTAATCGTGAACAAAATATCGACTTAAAGTACGCAAACCTGAAAGAGTGCTTAAACCCTTGGGGTTTATGCAGAATCTACGGAGAAGACGGAGGCGCCGCTATAGCCCTGAGCTTCAGCAACTCGAT
ACGTTCACAGGCCGGAGCTTCACGAATTCTTTGCCAGAGTTTCAAATAACTCGGTAAACCGACTTTTTATTTTTCCCCACAAGTCTCTGAAAAACCAAGgttctgctatctcagcctttttcttttgctttttcattcgcaaaattttaattcataggtatttcaactgcttgtcacattaaattgcaatatggcatcgc
cgttcaatcaccaaaacatgcggatggctcctcatccccagggccaacctgcgaacagcccatttcctcatccagggatgattatgcctggtcaaccccaggggctagttcagcccaaccacatgcgcccacaccctgatccttcgtgccaattgcctggccacttaccccaaccgcaaatgcaaatgcaaatgcagatg
caaatgcaatcgcagctgcaattgcaggcgcatatgcagatgcaaatgcacatgcaaactcatgagagtaactgtcattctcatcttgctacaataggtttacctaaccaagccctccagcaacttccagtaacggggacatctactggcagtggtggggattctcagtctcgtcagataaagactgacccggttcagaa
tgcccacatggtctcttcctctaatcacatgcacagtcgaactcaagtcgaggttccgagtacgaacatggttccctctgcgacgccgccctggaatccaactccggtacctgcgctgaatatccactccggatcgttgcctactccatcttccaatccaaccccggggctggttcaattgcctcatctttctgtccctt
tgcagcccaatccgtttccaatgttgaataacaatatgcatatgacggctcagcaatctgcggtggtacagcagttggcttctgtagtagccaatatacataacccggcaactctgatgcacattctttcttttgtacagTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAA
AGCATGCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCATACCAATCCCCAGGCTGGACCAACACCTCCTACATCTCCCTATCCACCTCCTGGTAATCTGTTGTTTCCCATGCAGAAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGT
TGCTCAAAATCAATCTCAGATACCCAATCAACTACATTTTCCCCACCCTCCTCACCCTCCCTACCCCCCTCCTATTCCCGAGCAAAAACATCTCACCTCACAATCTCTTCCTTCTGATGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGG
TGCAAAATGTTGGAGAAATGTCACAAATGGCAGCTGCCCATTTAGCGGGCAACATAGTCTTCCAGGGTGGCGGGCAAGTCCCAATGCATCAAAATCATCAACCGCTGCAGCAAATCCAGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACT
ACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAGACCTGGCTTCAGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTC
AGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTTCTAGGTTCCAGAAGAATATGGAAGGTGCAAGGTCATATGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCA
AATGTGATGAGCCAGGCTGCTCATTTGATGCCTCTGGTCAGTATTTATATATTACAGATTAAAATATTATATTGTCATGATTGTACCTAAACTGCTTAGATACTATGAAATGAACACATTGAAAATGAG
Intron 3 GTAAAGTGTG ... TGATATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.18 | 65.5 | 4.5 | 4 |
| A2 | 19.58 | 16.5 | 4 | 0 |
| A3 | 4.61 | 38.3 | 2 | 2 |
| A4 | 5.93 | 22.8 | 1.5 | 1 |
| A5 | 14.14 | 16 | 2.7 | 1 |
| A6 | 5.6 | 32.8 | 2.2 | 1 |
| A7 | 1.87 | 104.8 | 2.3 | 0 |
| A8 | 0.99 | 60.2 | 0.7 | 0 |
| A9 | 1.26 | 81.8 | 1.2 | 2 |
| A10 | 2.41 | 72 | 2.2 | 2 |
>TRINITY_DN121498_c0_g1_i6 from sample A1 / Example spliced isoformTGAAGTCCTGTGGGAAGGCAATTTATCTAGAGCTAGATGCAAAAGCATGTCTTTAAATTAAGTGTGTAGAGTATTTAATGCATGATTTGAGCAGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGA
AATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGCGCTTGAGAGAAATTCTTGATAAACAGGCAGAATTAGGCATTCAAGTAGCTGAAGTACCAGATCATT
ATGTGAAGGACAGTTGGGATCACCAGAAGGGGCACCATAAAAGTGGTCAGCATGGTCACTTTCGTCAAGATTCGTTCGCATCTAGAAAGGTTCCAAATAATAACAATTTTCCGAATTCAAAGAAGTCTCGATCAAATGAGAATGGTGAAAGCAATGAAGTGGGATCAGATGACACAGCCGTGAAGGTACCACGACTCGAG
GATTTAACATCTCCAAGGTCTGTACTGAATGATGCCAGTGATTTCAAGGTGAAACAATCCACAGAATCAATTGACACAGTTAACCCTGCTTCTGGTATTCGATGCACTGAAACTACTCCCTTGCCTCCAGGAGTGGATAAAAGTGACAAGGGAGTCTTGGGCAGTGCTCCACGGAATGATATAATCACAAATGTGGACAT
GCAGCTTCAGCACAATGATGGTAAAAAGTTCCACAAAGTCCAAAGTATTTGTCGATATTTCCAAAAGGGATTTTGTAGAAAAGGTCAAAGATGTCACCACCTTCATGTCCAGATGTCAAATGACAGTCATAATCAAACTAGTTTGGCTTCTAAGTATTCAAAAAGAGAACCCACACTTTTAGAAAAACTTCTAAGTCCAG
AAATAAAGAGGGAAAAAAGCCACTTACTGCAGATTTTCAGATTTATGGTGAACAATTCTTTTTTCAGTGAATGGCCAAATAAGTCTTTGAATTTTTTTCAGTGGTCTGGGGAAGCATCAAATGTAAATCCAGAACAGGCTGAAAGCCTGCATCTGTCTCATTTAAGTTCAATTATTGGCATTGATGAAGTGCACACACAA
TTAGATGAAGATGTTGTTCATAAAAAGATTGGCGTAGATGAGACAGAGAGCAGCAGTCACGAAGACATTGAGGAGGGAGAGATAGTGGAGGGGGAGATTGAATAGAAACGTTGAGAAAACAGGTTCACACATTATTCCATTCAAAAAAGTGATGAGAATTATAATCTGGCTATTATAGGTCTTCCAATACTCCAATCTTG
AGATCCGATGGACAACTGGACAGAGTTCTTAATAGTCAGTCATGCTTACTGTTGTATGCCAGTTTAAGTTTTGCTTACTTATGGATGTATATTATATGTTGTAGTGAATATTATCCTGTATGATTTGACATTTCTCCATGTATGATGGGCTTGTGTTTTGCCCTGATTTTCCGTCCTGTGAAATCATTACATATACACTC
GTCACTTGATATTGTCTAATATTTGTATATGTATACAAAGTTCTGGTCTATCTCATATGCAATTTTCATTTCAAACTATACATTACTAAGCGC
>TRINITY_DN121498_c0_g1_i4 from sample A1 / Example unspliced isoform:TGAAGTCCTGTGGGAAGGCAATTTATCTAGAGCTAGATGCAAAAGCATGTCTTTAAATTAAGTGTGTAGAGTATTTAATGCATGATTTGAGCAGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGgtaaagtgtgttctgatctgatgcagggaggga
tgtcgttttgtaatatctcttgaatggcttcaacaattttctgtggaagttcttattttctcaatttgtaaattttcatctcatggataatattatgatatatagGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCA
AGGTCTGGCTCCATGCTTGACATGACTGAATATGTTGTAGTTATTCAATTTGCTGGTTGACTGAATTATTTTGGTTCAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGGTGGGTAGCTACAACTTACCAGTTGAACCCTTCATTTTTTAATGTATACAAA
TCTGTTCAACTAATAGATGTAAATATTTGATTCAGAGATCACTACTCCCTCTGAATCACCCAGAGATCTGAAGTGGTTTGAGTCCCGATATCAAT
Intron 4 GTATGCATTA ... GTCTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.21 | 16 | 16 | 15 |
| A2 | 63.64 | 6 | 13 | 8 |
| A3 | 40 | 6 | 4 | 4 |
| A4 | 77.78 | 1 | 0 | 7 |
| A5 | 42.86 | 4 | 4 | 2 |
| A6 | 54.55 | 5 | 5 | 7 |
| A7 | 53.85 | 9 | 8 | 13 |
| A8 | 57.58 | 7 | 6 | 13 |
| A9 | 50 | 11 | 10 | 12 |
| A10 | 57.14 | 15 | 13 | 27 |
>TRINITY_DN113280_c0_g4_i7 from sample A2 / Example spliced isoformGGCAAATGCTGTGGGAATTATATGATTCGACCATGAGGAACTCGAAAATGCTTTTAGGAATTGTTATCATCAGCCGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACTACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAGACCTGGCTTC
AGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTCAGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTT
CTAGGTTCCAGAAGAATATGGAAGGTGCAAGGTCATATGCAGATGCACTAAT
>TRINITY_DN113280_c0_g4_i8 from sample A2 / Example unspliced isoform:GTAAAGGCGTAGGTTCACTTCGCCATTTTTATAATTTAAAATAGAACGACTTTCCATGGTGACAATATTAGCTTTAATCGTGAACAAAATATCGACTTAAAGTACGCAAACCTGAAAGAGTGCTTAAACCCTTGGGGTTTATGCAGAATCTACGGAGAAGACGGAGGCGCCGCTATAGCCCTGAGCTTCAGCAACTCGAT
ACGTTCACAGGCCGGAGCTTCACGAATTCTTTGCCAGAGTTTCAAATAACTCGGTAAACCGACTTTTTATTTTTCCCCACAAGTCTCTGAAAAACCAAGGTTCTGCTATCTCAGCCTTTTTCTTTTGCTTTTTCATTCGCAAAATTTTAATTCATAGGTATTTCAACTGCTTGTCACATTAAATTGCAATATGGCATCGC
CGTTCAATCACCAAAACATGCGGATGGCTCCTCATCCCCAGGGCCAACCTGCGAACAGCCCATTTCCTCATCCAGGGATGATTATGCCTGGTCAACCCCAGGGGCTAGTTCAGCCCAACCACATGCGCCCACACCCTGATCCTTCGTGCCAATTGCCTGGCCACTTACCCCAACCGCAAATGCAAATGCAAATGCAGATG
CAAATGCAATCGCAGCTGCAATTGCAGGCGCATATGCAGATGCAAATGCACATGCAAACTCATGAGAGTAACTGTCATTCTCATCTTGCTACAATAGGTTTACCTAACCAAGCCCTCCAGCAACTTCCAGTAACGGGGACATCTACTGGCAGTGGTGGGGATTCTCAGTCTCGTCAGATAAAGACTGACCCGGTTCAGAA
TGCCCACATGGTCTCTTCCTCTAATCACATGCACAGTCGAACTCAAGTCGAGGTTCCGAGTACGAACATGGTTCCCTCTGCGACGCCGCCCTGGAATCCAACTCCTGTACCTGCGCTGAATATCCACTCCGGATCGTTGCCTACTCCATCTTCCAATCCAACCCCGGGGCTGGTTCAATTGCCTCATCTTTCTGTCCCTT
TGCAGCCCAATCCGTTTCCAATGTTGAATAACAATATGCATATGACAGCTCAGCAATCTGCGGTGGTACAGCAGTTGGCTTCTGTAGTAGCCAATATACATAACCCGGCAACTCTGATGCACATTCTTTCTTTTGTACAGTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAA
AGCATGCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCATACCAATCCCCAGGCTGGACCAACACCTCCTACATCTCCCTATCCACCTCCTGGTAATCTGTTGTTTCCCATGCAGAAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGT
TGCTCAAAATCAATCTCAGATACCCAATCAACTACATTTTCCCCACCCTCCTCACCCTCCCTACCCCCCTCCTATTCCCGAGCAAAAACATCTCACCTCACAATCTCTTCCTTCTGATGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGG
TGCAAAATGTTGGAGAAATGTCACAAATGGCAGCTGCCCATTTAGCGGGCAACATAGTCTTCCAGGGTGGCGGGCAAGTCCCAATGCATCAAAATCATCAACCGCTGCAGCAAATCCAGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACT
ACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAGACCTGGCTTCAGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTC
AGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTTCTAGGTTCCAGAAGAATATGGAAGGTGCAAGgtatgcattacaaaatgcgcttttctttctgcctgtcctctgccaccttgattatctttgaattttcattatttagttctgaagtcagt
aggataggcagcaaatctcaatgtgtcactatgtgcttttcaagtctacatatgctttagtggccttttccatgcaatggctgaaatgataacaattatttatgcgagtacacagtgcaaactggaaagtgagaatatatggtttgattgagtcaatatttacttttgtggtcttatgcattcatcaaataaatggatat
tgtttatatataggattcaaactttgtcttggcagGTCATATGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCAAATGTGATGAGCCAGGCTGCTCATTTGATGCCTCTGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAA
GCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGC
GCTTGAGAGAAATTCTTGATAAACAGGCAGAATTAGGCATTCAAGTAGCTGAAGTACCAGATCATTATGTGAAGGACAGTTGGGATCACCAGAAGGGGCACCATAAAAGTGGTCAGCATGGTCACTTTCGTCAAGATTCGTTCGCATCTAGAAAGGTTCCAAATAATAACAATTTTCCGAATTCAAAGAAGTCTCGATCA
AATGAGAATGGTGAAAGCAATGAAGTGGGATCAGATGACACAGCCGTGAAGGTACCACGACTCGAGGATTTAACATCTCCAAGGTCTGTACTGAATGATGCCAGTGATTTCAAGGTGAAACAATCCACAGAATCAATTGACACAGTTAACCCTGCTTCTGGTATTCGATGCACTGAAACTACTCCCTTGCCTCCAGGAGT
GGATAAAAGTGACAAGGGAGTCTTGGGCAGTGCTCCACGGAATGATATAATCACAAATGTGGACATGCAGCTTCAGCACAATGATGGTAAAAAGTTCCACAAAGTCCAAAGTATTTGTCGATATTTCCAAAAGGGATTTTGTAGAAAAGGTCAAAGATGTCACCACCTTCATGTCCAGATGTCAAATGACAGTCATAATC
AAACTAGTTTGGCTTCTAAGTATTCAAAAAGAGAACCCACACTTTTAGAAAAACTTCTAAGTCCAGAAATAAAGAGGGAAAAAAGCCACTTACTGCAGATTTTCAGATTTATGGTGAACAATTCTTTTTTCAGTGAATGGCCAAATAAGTCTTTGAATTTTTTTCAGTGGTCTGGGGAAGCATCAAATGTAAATCCAGAA
CAGGCTGAAAGCCTGCATCTGTCTCATTTAAGTTCAATTATTGGCATTGATGAAGTGCACACACAATTAGATGAAGATGTTGTTCATAAAAAGATTGGCGTAGATGAGACAGAGAGCAGCAGTCACGAAGACATTGAGGAGGGAGAGATAGTGGAGGGGGAGATTGAATAGAAACGTTGAGAAAACAGGTTCACACATTA
TTCCATTCAAAAAAGTGATGAGAATTATAATCTGGCTATTATAGGTCTTCCAATACTCCAATCTTGAGATCCGATGGACAACTGGACAGAGTTCCTTATAGTCAGTCATGCTTACTGTTGTATGCCAGTTTAAGTTTTGCTTACTTATGGATGTATATTATATGTTGTAGTGAATATTATCCTGTATGATTTGACATTTC
TCCATGTATGATGGGCTTGTGTTTTGCCCTGATTTTCCGTCCTGTGAAATCATTACATATACACTCGTCACTTGATATTGTCTAATATTTGTATATGTATACAAAGTTCTGGTCTATCTCATATGCAATTTTCATTTCAAACTATACATTACTAAGCGTGTACATTTATGTTTTCATTTCATGGTCAAGAAAGTGCTAAT
GTTATACGAATATTTTGTGTATCATTTGGCACAGGTACACTGTACTTGTTGACACTGAATAAGTTATATATGTAAAGTGCTTTTCAAAAGTGCTTTTAAGTTATATAGGGTTGTTTACTGTGCCTGTATTATTTCTTACTGATGTACAAAGGATATTCTGTCCAGAGTATCAAACCCTATAACCTCAAAACATCGA
Intron 5 GTAAACCGAC ... AAAAACCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 32 | 7 |
| A2 | 84.62 | 3 | 21 | 12 |
| A3 | 87.1 | 2 | 15 | 12 |
| A4 | 91.3 | 1 | 13 | 8 |
| A5 | 95 | 1 | 25 | 13 |
| A6 | 63.64 | 6 | 10 | 11 |
| A7 | 83.91 | 7 | 44 | 29 |
| A8 | 81.25 | 3 | 16 | 10 |
| A9 | 63.93 | 22 | 38 | 40 |
| A10 | 83.49 | 9 | 52 | 39 |
>TRINITY_DN39867_c0_g1_i1 from sample A10 / Example spliced isoformTTGCCAGAGTTTCAAATAACTCGTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAAAGCATGCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCATACCAATCCCCAGGCTGGACCAACACCTCCTACATCTCCCTATCCACCTCCTGGTAATCTGTTGTTTCCCATGCAG
AAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGTTGCTCAAAATCAATCTCAGATACCCAATCAACTACATTTTCCCCACCCTCCTCACCCTCCCTACCCCCCTCCTATTCCCGAGCAAAAACATCTCACCTCACAATCTCTTCCTTCTGA
TGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGGTGCAAAATGTTGGAGAAATGTCACAAATGGCAGCTGCCCATTTAGCGGGCAACATAGTCTTCCAGGGTGGCGGGCAAGTCCCAATGCATCAAAATCATCAACCGCTGCAGCAAATCC
AGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACTACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAGACCAGGCTTCAGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGA
TTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTCAGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTTCTAGGTTCCAGAAGAATATGGAAGGTGCAAGGTCATA
TGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCAAATGTGATGAGCCAGGCTGCTCATTTGATGCCTCTGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTT
CACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGCGCTTGAGAGAAATTCTTGATAAACAGGCAGAATTAGGCATT
CAAGTAGCTGAAGTACCAGATCATTATGTGAAGGACAGTTGGGATCACCAGAAGGGGCACCATAAAAGTGGTCAGCATGGTCACTTTCGTCAAGATTCGTTCGCATCTAGAAAGGTTCCAAATAATAACAATTTTCCGAATTCAAAGAAGTCTCGATCAAATGAGAATGGTGAAAGCAATGAAGTGGGATCAGATGACAC
AGCCGTGAAGGTACCACGACTCGAGGATTTAACATCTCCAAGGTCTGTACTGAATGATGCCAGTGATTTCAAGGTGAAACAATCCACAGAATCAATTGACACAGTTAACCCTGCTTCTGGTATTCGATGCACTGAAACTACTCCCTTGCCTCCAGGAGTGGATAAAAGTGACAAGGGAGTCTTGGGCAGTGCTCCACGGA
ATGATATAATCACAAATGTGGACATGCAGCTTCAGCACAATGATGGTAAAAAGTTCCACAAAGTCCAAAGTATTTGTCGATATTTCCAAAAGGGATTTTGTAGAAAAGGTCAAAGATGTCACCACCTTCATGTCCAGATGTCAAATGACAGTCATAATCAAACTAGTTTGGCTTCTAAGTATTCAAAAAGAGAACCCACA
CTTTTAGAAAAACTTCTAAGTCCAGAAATAAAGAGGGAAAAAAGCCACTTACTGCAGATTTTCAGATTTATGGTGAACAATTCTTTTTTCAGTGAATGGCCAAATAAGTCTTTGAATTTTTTTCAGTGGTCTGGGGAAGCATCAAATGTAAATCCAGAACAGGCTGAAAGCCTGCATCTGTCTCATTTAAGTTCAATTAT
TGGCATTGATGAAGTGCACACACAATTAGATGAAGATGTTGTTCATAAAAAGATTGGCGTAGATGAGACAGAGAGCAGCAGTCACGAAGACATTGAGGAGGGAGAGATAGTGGAGGGGGAGATTGAATAGAAACGTTGAGAAAACAGGTTCACACATTATTCCATTCAAAAAAGTGATGAGAATTATAATCTGGCTATTA
TAGGTCTTCCAATACTCCAATCTTGAGATCCGATGGACAACTGGACAGAGTTCCTTATAGTCAGTCATGCTTACTGTTGTATGCCAGTTTAAGTTTTGCTTACTTATGGATGTATATTATATGTTGTAGTGAATATTATCCTGTATGATTTGACATTTCTCCATGTATGATGGGCTTGTGTTTTGCCCTGATTTTCCGTC
CTGTGAAATCATTACATATACACTCGTCACTTGATATTGTCTAATATTTGTATATGTATACAAAGTTCTGGTCTATCTCATATGCAATTTTCATTTCAAACTATACATTACTAAGCGTGTACATTTATGTTTTCATTTCATGGTCAAGAAAGTGCT
>TRINITY_DN39867_c0_g1_i2 from sample A10 / Example unspliced isoform:TATAATTTAAAATAGAACGACTTTCCATGGTGACAATATTAGCTTTAATCGTGAACAAAATATCGACTTAAAGTACGCAAACCTGAAAGAGTGCTTAAACCCTTGGGGTTTATGCAGAATCTACGGAGAAGACGGAGGCGCCGCTATAGCCCTGAGCTTCAGCAACTCGATACGTTCACAGGCCGGAGCTTCACGAATTC
TTTGCCAGAGTTTCAAATAACTCGgtaaaccgactttttatttttccccacaagtctctgaaaaaccaagTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAAAGCATGCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCATACCAATCCCCAGGCTGGACCAACACCTC
CTACATCTCCCTATCCACCTCCTGGTAATCTGTTGTTTCCCATGCAGAAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGTTGCTCAAAATCAATCTCAGATACCCAATCAACTACATTTTCCCCACCCTCCTCACCCTCCCTACCCCCCT
CCTATTCCCGAGCAAAAACATCTCACCTCACAATCTCTTCCTTCTGATGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGGTGCAAAATGTTGGAGAAATGTCACAAATGGCAGCTGCCCATTTAGCGGGCAACATAGTCTTCCAGGGTGG
CGGGCAAGTCCCAATGCATCAAAATCATCAACCGCTGCAGCAAATCCAGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACTACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAG
ACCAGGCTTCAGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTCAGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAAC
AATGGGCCTTCTAGGTTCCAGAAGAATATGGAAGGTGCAAGGTCATATGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCAAATGTGATGAGCCAGGCTGCTCATTTGATGCCTCTGGGAAGATGTTGAAGGAGCATATGTTGATTCATCA
GAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAAGGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGA
GGCAGCGCTTGAGAGAAATTCTTGATAAACAGGCAGAATTAGGCATTCAAGTAGCTGAAGTACCAGATCATTATGTGAAGGACAGTTGGGATCACCAGAAGGGGCACCATAAAAGTGGTCAGCATGGTCACTTTCGTCAAGATTCGTTCGCATCTAGAAAGGTTCCAAATAATAACAATTTTCCGAATTCAAAGAAGTCT
CGATCAAATGAGAATGGTGAAAGCAATGAAGTGGGATCAGATGACACAGCCGTGAAGGTACCACGACTCGAGGATTTAACATCTCCAAGGTCTGTACTGAATGATGCCAGTGATTTCAAGGTGAAACAATCCACAGAATCAATTGACACAGTTAACCCTGCTTCTGGTATTCGATGCACTGAAACTACTCCCTTGCCTCC
AGGAGTGGATAAAAGTGACAAGGGAGTCTTGGGCAGTGCTCCACGGAATGATATAATCACAAATGTGGACATGCAGCTTCAGCACAATGATGGTAAAAAGTTCCACAAAGTCCAAAGTATTTGTCGATATTTCCAAAAGGGATTTTGTAGAAAAGGTCAAAGATGTCACCACCTTCATGTCCAGATGTCAAATGACAGTC
ATAATCAAACTAGTTTGGCTTCTAAGTATTCAAAAAGAGAACCCACACTTTTAGAAAAACTTCTAAGTCCAGAAATAAAGAGGGAAAAAAGCCACTTACTGCAGATTTTCAGATTTATGGTGAACAATTCTTTTTTCAGTGAATGGCCAAATAAGTCTTTGAATTTTTTTCAGTGGTCTGGGGAAGCATCAAATGTAAAT
CCAGAACAGGCTGAAAGCCTGCATCTGTCTCATTTAAGTTCAATTATTGGCATTGATGAAGTGCACACACAATTAGATGAAGATGTTGTTCATAAAAAGATTGGCGTAGATGAGACAGAGAGCAGCAGTCACGAAGACATTGAGGAGGGAGAGATAGTGGAGGGGGAGATTGAATAGAAACGTTGAGAAAACAGGTTCAC
ACATTATTCCATTCAAAAAAGTGATGAGAATTATAATCTGGCTATTATAGGTCTTCCAATACTCCAATCTTGAGATCCGATGGACAACTGGACAGAGTTCCTTATAGTCAGTCATGCTTACTGTTGTATGCCAGTTTAAGTTTTGCTTACTTATGGATGTATATTATATGTTGTAGTGAATATTATCCTGTATGATTTGA
CATTTCTCCATGTATGATGGGCTTGTGTTTTGCCCTGATTTTCCGTCCTGTGAAATCATTACATATACACTCGTCACTTGATATTGTCTAATATTTGTATATGTATACAAAGTTCTGGTCTATCTCATATGCAATTTTCATTTCAAACTATACATTACTAAGCGTGTACATTTATGTTTTCATTTCATGGTCAAGAAAGT
GCT
Intron 6 GTAAACCGAC ... TTTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.38 | 25 | 47 | 8 |
| A2 | 53.12 | 15 | 27 | 7 |
| A3 | 72.55 | 7 | 20 | 17 |
| A4 | 72.55 | 7 | 29 | 8 |
| A5 | 64.71 | 9 | 27 | 6 |
| A6 | 66.67 | 7 | 10 | 18 |
| A7 | 64.47 | 27 | 48 | 50 |
| A8 | 80.39 | 5 | 21 | 20 |
| A9 | 62.16 | 35 | 56 | 59 |
| A10 | 71.43 | 21 | 70 | 35 |
>TRINITY_DN121498_c0_g1_i7 from sample A1 / Example spliced isoformGGCGTAGGTTCACTTCGCCATTTTTATAATTTAAAATAGAACGACTTTCCATGGTGACAATATTAGCTTTAATCGTGAACAAAATATCGACTTAAAGTACGCAAACCTGAAAGAGTGCTTAAACCCTTGGGGTTTATGCAGAATCTACGGAGAAGACGGAGGCGCCGCTATAGCCCTGAGCTTCAGCAACTCGATACGTT
CACAGGCCGGAGCTTCACGAATTCTTTGCCAGAGTTTCAAATAACTCGTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAAAGCATGCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCATACCAATCCCCAGGCTGGACCAACACCTCCTACATCTCCCTATCCACCTCC
TGGTAATCTGTTGTTTCCCATGCAGAAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGTTGCTCAAAATCAATCTCAGATACCCAATCAACTACATTTTCCCCACCCTCCTCACCCTCCCTACCCCCCTCCTATTCCCGAGCAAAAACATC
TCACCTCACAATCTCTTCCTTCTGATGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGGTGCAAAATGTTGGAGAAATGTCACAAATGGCAGCTGCCCATTTAGCGGGCAACATAGTCTTCCAGGGTGGCGGGCAAGTCCCAATGCATCAA
AATCATCAACCGCTGCAGCAAATCCAGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACTACAAATGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAGACCAGGCTTCAGGGTCTGGTGT
GCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTCAGAGCAAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTTCTAGGTTCCAGA
AGAATATGGAAGGTGCAAGGTCATATGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCAAATGTGATGAGCCAGGCTGCTCATTTGATGCCTCT
>TRINITY_DN121498_c0_g1_i3 from sample A1 / Example unspliced isoform:GGCGTAGGTTCACTTCGCCATTTTTATAATTTAAAATAGAACGACTTTCCATGGTGACAATATTAGCTTTAATCGTGAACAAAATATCGACTTAAAGTACGCAAACCTGAAAGAGTGCTTAAACCCTTGGGGTTTATGCAGAATCTACGGAGAAGACGGAGGCGCCGCTATAGCCCTGAGCTTCAGCAACTCGATACGTT
CACAGGCCGGAGCTTCACGAATTCTTTGCCAGAGTTTCAAATAACTCGgtaaaccgactttttatttttccccacaagtctctgaaaaaccaaggttctgctatctcagcctttttcttttgctttttcattcgcaaaattttaattcataggtatttcaactgcttgtcacattaaattgcaatatggcatcgccgttc
aatcaccaaaacatgcggatggctcctcatccccagggccaacctgcgaacagcccatttcctcatccagggatgattatgcctggtcaaccccaggggctagttcagcccaaccacatgcgcccacaccctgatccttcgtgccaattgcctggccacttaccccaaccgcaaatgcaaatgcaaatgcagatgcaaat
gcaatcgcagctgcaattgcaggcgcatatgcagatgcaaatgcacatgcaaactcatgagagtaactgtcattctcatcttgctacaataggtttacctaaccaagccctccagcaacttccagtaacggggacatctactggcagtggtggggattctcagtctcgtcagataaagactgacccggttcagaatgccc
acatggtctcttcctctaatcacatgcacagtcgaactcaagtcgaggttccgagtacgaacatggttccctctgcgacgccgccctggaatccaactccggtacctgcgctgaatatccactccggatcgttgcctactccatcttccaatccaaccccggggctggttcaattgcctcatctttctgtccctttgcag
cccaatccgtttccaatgttgaataacaatatgcatatgacggctcagcaatctgcggtggtacagcagttggcttctgtagtagccaatatacataacccggcaactctgatgcacattctttcttttgtacagTGCTTTCAGAATGGTTTTCCCAGTGCACCAATGCCTTCTCCACAGATTAATAATTACCAAAGCAT
GCCACCACAAGGTTCAACTCCTGGCCTAGCCAGTCATACCAATCCCCAGGCTGGACCAACACCTCCTACATCTCCCTATCCACCTCCTGGTAATCTGTTGTTTCCCATGCAGAAGACTTCTGCACCCAATGCAGTTATCTCAAATACGCAACCTTCTCATACACAATTCCACAACAACGTTGGATCTGTTGGAGTTGCTC
AAAATCAATCTCAGATACCCAATCAACTACATTTTCCCCACCCTCCTCACCCTCCCTACCCCCCTCCTATTCCCGAGCAAAAACATCTCACCTCACAATCTCTTCCTTCTGATGCTTGTCCTCCGTTTTCGTCTAATCCAACCTTTTCCACTCCCACACAACCAACAACCCAAACTTTCACTCCACCTTTCATGGTGCAA
AATGTTGGAGAAATGTCACAAATGGCAGCTGCCCATTTAGCGGGCAACATAGTCTTCCAGGGTGGCGGGCAAGTCCCAATGCATCAAAATCATCAACCGCTGCAGCAAATCCAGCACTATATGTACCCAAGCAACCTTCAACCATCACAGGCCAGTTCAAATGAGCAAGATGGTGGAGTCGAGAATTCCCCTACTACAAA
TGACATGCAGCATCGACAAAATGGGTCTTTTAATAGAGGACTTTCATCGGGGAATGGTGGTCGAGACCAGGCTTCAGGGTCTGGTGTGCACCGATATAATCATGGTGGCAGATTGAGCACAGACCACGGTAGACGGCCAGAAGCTGAGAAGCCTCATCCAAAGCGGAAAATTGGATCATCTGGAATTAGCTCTTCAGAGC
AAGCCGAAGGAAGAGCAAAACTTGGATTTCCCTTACCCAATTTTTCTCATAGTGGGAAGTTTAACAATGGGCCTTCTAGGTTCCAGAAGAATATGGAAGGTGCAAGGTCATATGCAGATGCACTAATCTGCAAGAATTGTGATCTCTCTTTCAATCATAGGCGTCAATTGGATGAGCATTTAAACTCTCATGTCAAATGT
GATGAGCCAGGCTGCTCATTTGATGCCTCTGGGAAGATGTTGAAGGAGCATATGTTGATTCATCAGAAGAAGCAGAGCGGGCAAGCCTCAGTTGCTGCTCAAAGGGCTGCTTCACTGAAATCTGAGTCTGCTGAAGAAATTCAGCAATATCGTGAAGAGCGCAAAAGGAATTATCCCACAGAATCAAACATAACACGCAA
GGCTCAGGCAATGCGACAGAAAAAGGCACGGGGTGAGCTTATAGATGAGGATGCCAAAAAGCGGAGGCAGGTGGGTAGCTACAACTTACCAGTTGAACCCTTCATTTTTTAATGTATACAAATCTGTTCAACTAATAGATGTAAATATTTGATTCAGAGATCACTACTCCCTCTGAATCACCCAGAGATCTGAAGTGGTT
TGAGTCCCGATATCAAT