sp|P34105|MAOX_POPTR ----> NADP-dependent malic enzyme
Intron 1 GTTGGGTGAT ... TTTGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.12 | 158 | 179 | 13 |
| A2 | 55.65 | 106 | 133 | 14 |
| A3 | 56.3 | 118 | 152 | 3 |
| A4 | 57.6 | 92 | 125 | 11 |
| A5 | 57.69 | 44 | 60 | 12 |
| A6 | 64.29 | 30 | 54 | 6 |
| A7 | 54.19 | 104 | 123 | 1 |
| A8 | 62.83 | 42 | 71 | 1 |
| A9 | 48.56 | 125 | 118 | 3 |
| A10 | 54.31 | 106 | 126 | 0 |
>TRINITY_DN111861_c3_g1_i5 from sample A2 / Example spliced isoformTGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTCTTTTTGCCACTAAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTG
AGTCAATGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATC
>TRINITY_DN111861_c3_g1_i3 from sample A2 / Example unspliced isoform:TGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAgttgggtgatcacatgccccacaatgtaaacagtgtccctcctcttgataggtgg
tgaatgctcatcacttaaatattaaataagcatctataaacttccataattaggctattttcatgtttagcaagaaagaaatctgaagtgtacatgcgttgggttataaattataaatgaagtgctcgatttctagtttggttcatatagaaaactttatatgtctttttatatagaaaactttatatgtctctttgtgc
ggcatggatttaaatttaaaatatggatttaatgtgtgtgtataatatgcatattgttgcaatttattttctcttcttgagtttggaacagTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATC
Intron 2 GTCTTTTTGC ... CCTCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.55 | 346.9 | 38.4 | 62 |
| A2 | 15.1 | 269.1 | 43.4 | 44 |
| A3 | 16.01 | 286.4 | 35 | 52.1 |
| A4 | 18.27 | 264.8 | 56 | 54.5 |
| A5 | 11.12 | 138.8 | 18.1 | 16.8 |
| A6 | 9.96 | 101.4 | 16.1 | 10.3 |
| A7 | 15.98 | 237.3 | 29.1 | 43.4 |
| A8 | 22.26 | 112.5 | 12.1 | 31.5 |
| A9 | 18.58 | 242.1 | 29 | 51.8 |
| A10 | 15.26 | 241.6 | 25 | 42.1 |
>TRINITY_DN111861_c3_g1_i7 from sample A2 / Example spliced isoformTGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATTGGTTATGTATTGCTGAGAGATCCTCGCTA
CAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATC
>TRINITY_DN111861_c3_g1_i1 from sample A2 / Example unspliced isoform:TGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGgtctttttgccactaagatcaatcagtgacgaggtggagcgttgttataaccctcattcagGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTG
AGTCAAGTTGGGTGATCACATGCCCCACAATTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATC
Intron 3 GTGAATGCTC ... TTTGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.57 | 65 | 39.5 | 36 |
| A2 | 37.86 | 45 | 30 | 26 |
| A3 | 19.17 | 99 | 32 | 16 |
| A4 | 29.12 | 64 | 26 | 28 |
| A5 | 44.25 | 26 | 18.5 | 23 |
| A6 | 37.03 | 32 | 12 | 26 |
| A7 | 28.93 | 47 | 19 | 20 |
| A8 | 23.84 | 24 | 12.5 | 3 |
| A9 | 18.57 | 54 | 18 | 7 |
| A10 | 13.32 | 71 | 13.5 | 9 |
>TRINITY_DN102808_c1_g1_i6 from sample A5 / Example spliced isoformGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATGTAAACAGTGTCCCTC
CTCTTGATAGGTGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGC
>TRINITY_DN102808_c1_g1_i1 from sample A5 / Example unspliced isoform:GGGGACACTGTTTACATTGTGGGGCATGTGATCACCCAACTTGACTCAACGGCCATTATGGCTCAACTGCTGACGGCAGCCCCACAATGTAAACAGTGTCCCTCCTCTTGATAGGTGgtgaatgctcatcacttaaatattaaataagcatctataaacttccataattaggctattttcatgtttagcaagaaagaaat
ctgaagtgtacatgcgttgggttataaattataaatgaagtgctcgatttctagtttggttcatatagaaaactttatatgtctttttatatagaaaactttatatgtctctttgtgcggcatggatttaaatttaaaatatggatttaatgtgtgtataatatgcatattgttgcaatttattttctcttcttgagttt
ggaacagTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGC
Intron 4 GTGCTTTCCG ... TGTGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.44 | 8179.1 | 2706 | 991.8 |
| A2 | 19.09 | 8537.5 | 3055.1 | 972.5 |
| A3 | 19.84 | 8766.3 | 3254.3 | 1085.6 |
| A4 | 18.78 | 8389 | 2776 | 1102.3 |
| A5 | 20.2 | 4210.9 | 1541.5 | 590.8 |
| A6 | 21.01 | 3376.3 | 1274.3 | 521.9 |
| A7 | 20.33 | 9474.6 | 3651.3 | 1185.3 |
| A8 | 19.36 | 3087.8 | 1075.8 | 407.4 |
| A9 | 20.62 | 7493.1 | 2839.3 | 1053.5 |
| A10 | 20.69 | 9262 | 3587.4 | 1245.6 |
>TRINITY_DN48344_c0_g4_i8 from sample A7 / Example spliced isoformGAAATTATGCGGCGAACAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGGTCATTTATTCATAGTTCCAAGCTGCAAATTCACAATTGGTACGATTTTTCTGAGACACCGTCGTTTGATTTCTACTGAGTGTATCATTTTCTCCGTTGAGCAGATGGGACCACCAACACAGTTGAGAACTACCTTCCGCA
AGTAAAACGGTTTCGCATTGAAAATGGAACCCTTCTGAATTAAATCAACCCAGTGACACCATTCCATCCATCGTGCTCTTACGGTTGATTCTGAACGGTACGACAACGACTCCGGCTCGTGCCTGGTAGACCTAACAACTCAAATGCACCATACAAATCTGACCTACCCCGGGAAAAGAATTCGCGAATCGCAGCCAATC
CCGCATGACAACCATGTCTAGTTTGGCCCGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTCGATCAGATGGTGTCATGCATGGACGGAGGCGTGACATAATACGAAACTTACCAAGCAGCCATAGAATATTTAGCAGAGTTGCAGGATTTCACGTCTCAAGCCAAATCATGAATGGATATAGCAAGTCCACTG
TTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAGGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAG
CTTCAAGTATTTTACTTCCTTTCTTATTCCTATGTTATGAATGCGCTTTCTTTTGTTATTATAAATTCACTTAGTGTTTTTTTTTAAGGAAAACATCACTGGATCCCCATCTCCCCCGGAATATCCAGATCCTCCCTCTTCCCCGGAATATCCAGATCCCCCCTCTTCCCTAGAATATACGTGCTTTGGTTGGATTGTTC
AACCAATTGTACTTATCCTTGGGGCTTTAGTCACTCAATG
>TRINITY_DN48344_c0_g4_i2 from sample A7 / Example unspliced isoform:GAAATTATGCGGCGAACAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGGTCATTTATTCATAGTTCCAAGCTGCAAATTCACAATTGGTACGATTTTTCTGAGACACCGTCGTTTGATTTCTACTGAGTGTATCATTTTCTCCGTTGAGCAGATGGGACCACCAACACAGTTGAGAACTACCTTCCGCA
AGTAAAACGGTTTCGCATTGAAAATGGAACCCTTCTGAATTAAATCAACCCAGTGACACCATTCCATCCATCGTGCTCTTACGGTTGATTCTGAACGGTACGACAACGACTCCGGCTCGTGCCTGGTAGACCTAACAACTCAAATGCACCATACAAATCTGACCTACCCCGGGAAAAGAATTCGCGAATCGCAGCCAATC
CCGCATGACAACCATGTCTAGTTTGGCCCGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTAGATCAGCTGGTGTCATGCATGGTCGGAGGCGTGACATAATTCAAAACTTACGAGGCAGCCATAGAATATTTAGCAGgtgctttccgcgtgaggagggtctcctggactttcagatgggctgccctgccgcct
accttcctgcagtctttctctctatatatacaataccaaggccttttctataatttgaatcaatcacaccagcccggtaactcaccctgtcttcaatctgtgtggcagAGTTGCAGGATTTCACGTCTCAAGCCAAATCATGAATGGATATAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATA
GGGCTTCGGAGGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAGCTTCAAGAGAAGCGGCTAATGCATATTATTCGCCAA
TACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTATTTTCAGGCGTCCACAGGGTCTTTACATAAGCTTGAAAGAAAAGGG
CAAAGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGAGTCCGTCCTTCCGAGTGCCTTCCAATAACAATTGATGTGGGGACTA
ACAATGAAATGCTGCTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTACAGGACAGGAATATGATGATCTTCTCAACGAGTTTATGTATGCTGCCAAACAAACTTATGGAGAGAAAGTCCTTATCCAGTTTGAAGACTTTGCGAATCACAATGCCTTCAATTTGCTTGCAAAGTATAGATCAACACACCTG
GTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTTCAGGCCTTGTCGCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGT
Intron 5 GTAATAGCTA ... ATATAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.26 | 30.5 | 12.3 | 24.8 |
| A2 | 37.64 | 34.8 | 9 | 14 |
| A3 | 47.25 | 27.3 | 15.3 | 18 |
| A4 | 47.88 | 41 | 7.3 | 21.3 |
| A5 | 63 | 13.3 | 6.5 | 14 |
| A6 | 35.36 | 11.5 | 3.5 | 3 |
| A7 | 22.04 | 23.5 | 1 | 5 |
| A8 | 50.41 | 9.5 | 2.5 | 8 |
| A9 | 45.35 | 21.5 | 3.3 | 9.8 |
| A10 | 13.92 | 19.5 | 0.8 | 2 |
>TRINITY_DN111861_c3_g1_i5 from sample A2 / Example spliced isoformTGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTCTTTTTGCCACTAAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTG
AGTCAATGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATC
>TRINITY_DN111861_c3_g1_i4 from sample A2 / Example unspliced isoform:TGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGgtaacagctaatgctgacttcatattattccccatttaaattggaaattagcatagacccatcaagatttgataggtaccttgaggctgctaagcttgggttgtgtgaactcaagatatgtatcctccagcttc
acaacttggaggttcatgtcatgtcattcatatcggacccaggtttagatgggtttgtgttagtgtttataatcaatgcatccaatacacaatggcacaaagcccactcaaaagaaatgatggataatccccatctttacccgggctgcataatgcatcttgcagtaatcgttaatgggactcagaatatggattttgaa
ttgtctatctgttgtttaaatatatttaagagtgcactctcatataattagGTCTTTTTGCCACTAAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTAAACCATGATGGCTGTTGAGTCAAGTTGGGTGA
TCACATGCCCCACAATGTAAACAGTGTCCCACCTCTTGATAGGTGGTGAAAGCTCATCACTTTATTAAATAAGCATCTAAAAACTTCCATAATTAGGCTATTTTCATGTTTAGCAAGAAAGAAATCTGAAGTGTACATGCGTTGGGTTATAAATTATAAATGAAGTGCTCGATTTCTAGTTTGGTTCATATAGAAAACTT
TATATGTCTTTTTATATAGAAAACTTTATATGTCTCTTTGTGCGGCATGGATTTAAATTTAAAATATGGATTTAATGTGTGTGTATAATATGCATATTGTTGCAATTTATTTTCTCTTCTTGAGTTTGGAACAG
Intron 6 GTAAACAGTG ... TTTGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.69 | 334 | 99.5 | 28 |
| A2 | 20.02 | 262 | 66 | 24 |
| A3 | 21.54 | 285 | 79 | 9 |
| A4 | 23.88 | 211 | 66.5 | 24 |
| A5 | 21.52 | 120 | 34 | 15 |
| A6 | 22.68 | 81 | 24 | 20 |
| A7 | 15.82 | 281 | 54 | 13 |
| A8 | 24.76 | 98 | 33 | 1 |
| A9 | 17.75 | 265 | 58 | 7 |
| A10 | 18.64 | 232 | 54.5 | 7 |
>TRINITY_DN124868_c0_g1_i2 from sample A1 / Example spliced isoformTAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCAC
AATTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAG
>TRINITY_DN124868_c0_g1_i4 from sample A1 / Example unspliced isoform:TAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCAC
AATgtaaacagtgtccctcctcttgataggtggtgaatgctcatcacttaaatattaaataagcatctataaacttccataattaggctattttcatgtttagcaagaaagaattctgaagtgtgcatgcgttgggttataaattataaatgaagtgctcgatttctagtttggttcatatagaaaactttatatgtctc
tttatatagaaaattttatatgtctctttgtgcggcatggatttaaatttaaaatatggatttaatgtgtgtataatatgcatattgttgcaatttattttctcttcttgagtttggaacagTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGT
ACGAG
Intron 7 GTAACAGCTA ... TGCCACTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 98.97 | 14 | 1341 | 28 |
| A2 | 99.19 | 11 | 1355 | 16 |
| A3 | 98.99 | 14 | 1377 | 22 |
| A4 | 98.9 | 18 | 1623 | 30 |
| A5 | 98.97 | 7 | 674 | 13 |
| A6 | 99.86 | 1 | 689 | 3 |
| A7 | 99.35 | 11 | 1693 | 9 |
| A8 | 97.91 | 13 | 608 | 15 |
| A9 | 99.13 | 12 | 1371 | 14 |
| A10 | 99.31 | 11 | 1588 | 9 |
>TRINITY_DN48344_c0_g4_i6 from sample A7 / Example spliced isoformGAGGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATTGGTTATGTAT
TGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAGCTTCAAG
>TRINITY_DN48344_c0_g4_i4 from sample A7 / Example unspliced isoform:GAAATTATGCGGCGAACAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGGTCATTTATTCATAGTTCCAAGCTGCAAATTCACAATTGGTACGATTTTTCTGAGACACCGTCGTTTGATTTCTACTGAGTGTATCATTTTCTCCGTTGAGCAGATGGGACCACCAACACAGTTGAGAACTACCTTCCGCA
AGTAAAACGGTTTCGCATTGAAAATGGAACCCTTCTGAATTAAATCAACCCAGTGACACCATTCCATCCATCGTGCTCTTACGGTTGATTCTGAACGGTACGACAACGACTCCGGCTCGTGCCTGGTGGACCTAACAACCCAAATGCATACTATAAAACCCTGACCAACCCCGGGAAAAGAATTCGCGAATCGCAGGCTC
GCAGCCAATATCGCATGACAACCATGTCTAGTTTGGCCCGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTCGATCAGATGGTGTCATGCATGGACGGAGGCGTGACATAATACGAAACTTACCAAGCAGCCATAGAATATTTAGCAGAGTTGCAGGATTTCACGTCTCAAGCCAAATCATGAATGGATATAGC
AAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAGGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGgtaacagctaatgctgacttcatattattccccatttaaattggaaattagcatagacccatcaagatttgataggtacctcgaggctgctaagctggggttgtg
tgaactcaagatatgcatcctccagcttcacaacttgtaggttcatgtcatgacattcatatcggatccaggtttagatgggtttgtgttagtgtctataatcagtgcatccaatacataatggcacaaaacccacttaaaagaattgatggataatccccatctttatccgggttgcataatgcatcttgcagtaatcg
ttaatgggactcagaatatggattttgaattgtctatctgttgtttaaatatatttaagagtgcactctcatataattaggtctttttgccactaagATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGTTTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGC
CATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATGTAAACAGTGTCCCTCCTCTTGATAGGTGGTGAATGCTCATCACTTAAATATTAAATAAGCATCTATAAACTTCCATAATTAGGCTATTTTCATGTTTAGCAAGAAAGAAATCTGAAGTGTACATGCGTTGGGTTATAAATTATAAATGAAGTGC
TCGATTTCTAGTTTGGTTCATATAGAAAACTTTATATGTCTTTTTATATAGAAAACTTTATATGTCTCTTTGTGCGGCATGGATTTAAATTTAAAATATGGATTTAATGTGTGTGTATAATATGCATATTGTTGCAATA
Intron 8 GTTCGATTTC ... TTTGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.5 | 7034.4 | 1294.6 | 2118 |
| A2 | 19 | 6259.9 | 1231.3 | 1710 |
| A3 | 18.6 | 6863.1 | 1258.1 | 1884 |
| A4 | 18.48 | 6990.6 | 1403.7 | 1774 |
| A5 | 18.88 | 3084 | 628.3 | 810 |
| A6 | 18.97 | 3231 | 590.9 | 926 |
| A7 | 18.67 | 8064 | 1410.9 | 2300 |
| A8 | 18.73 | 2914.3 | 511.1 | 837 |
| A9 | 18.7 | 6490.9 | 1225.3 | 1769 |
| A10 | 17.89 | 7949.1 | 1342.4 | 2130 |
>TRINITY_DN45477_c1_g2_i7 from sample A8 / Example spliced isoformTCAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGGTCATTTATTCATAGTTCCAAGCTGCAAATTCACAATTGGTACGATTTTTCTGAGACACCGTCGTTTGATTTCTACTGAGTGTATCATTTTCTCCGTTGAGCAGATGGGACCACCAACACAGTTGAGAACTACCTTCCGCAAGTAAAACGGTTTCG
CATTGAAAATGGAACCCTTCTGAATTAAATCAACCCAGTGACACCATTCCATCCATCGTGCTCTTACGGTTGATTCTGAACGGTACGACAACGACTCCGGCTCGTGCCTGGTGGACCTAACAACCCAAATGCATACTATAAAACCCTGACCAACCCCGGGAAAAGAATTCGCGAATCGCAGGCTCGCAGCCAATATCGCA
TGACAACCATGTCTAGTTTGGCCAGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTCGATCAGATGGTGTCATGCATGGACGGAGGCGTGACATAATACGAAACTTACCAAGCAGCCATAGAATATTTAGCAGAGTTGCAGGATTTCACGTCTCAAGCCAAATCATGAATGGATATAGCAAGTCCACTGTTGCA
GGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAGGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAGCTTCA
AGAGAAGCGGCTAATGCATATTATTCGCCAATACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTATTTTCAGGCGTCCAC
AGGGTCTTTACATAAGCTTGAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGAGTCCGTCCTTCCGAG
TGCCTTCCAATAACAATTGATGTGGGGACTAACAATGAAATGCTACTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTACAGGACAGGAATATGATGATCTTCTCAACGAGTTTATGTATGCTGCCAAACAAGCTTATGGAGAGAAAGTACTTATCCAGTTTGAAGACTTCGCGAATCACAATGCCTTCAA
TTTGCTTGCAAAGTATAGATCAACACACCTGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTTCAGGCCTTGTCGCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGTGAGGCAGGGACAGGTATTGCAGAGCTCATAGCACTAGAAATGACCAAACAGG
GTAAAATCTCATTGAATGAAGCTCGCGAGAGGATATGGTTGGTGGACTCTAAGGGACTCATTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGC
>TRINITY_DN45477_c1_g2_i17 from sample A8 / Example unspliced isoform:TCAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGGTCATTTATTCATAGTTCCAAGCTGCAAATTCACAATTGAGTTGCAGGATTTCACGTCTCGAGCCAAATCATGAATGGAGATAGCAAGTCCACTGCTGCTTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCAGAGGA
GCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGgttcgatttctcaagtgggtggtgcgctttcataagggggctgccgtcagcagttgagccataatggccgttgagtcaagttgggtgatcacatgccccacaatgtaaacagtgtccctcctcttgataggtggtgaatgctcatcacttaaatattaaataag
catctataaacttccataattaggctattttcatgtttagcaagaaagaaatctgaagtgtacatgcgttgggttataaattataaatgaagtgctcgatttctagtttggttcatatagaaaactttatatgtctttttatatagaaaactttatatgtctctttgtgcggcatggatttaaatttaaaatatggattt
aatgtgtgtgtataatatgcatattgttgcaatttattttctcttcttgagtttggaacagTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAGCTTCAAGAGAAGCGGCTAATGCAT
ATTATTCGCCAATACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTATTTTCAGGCGTCCACAGGGTCTTTACATAAGCTT
GAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGAGTCCGTCCTTCCGAGTGCCTTCCAATAACAATTG
ATGTGGGGACTAACAATGAAATGCTACTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTACAGGACAGGAATATGATGATCTTCTCAACGAGTTTATGTATGCTGCCAAACAAGCTTATGGAGAGAAAGTACTTATCCAGTTTGAAGACTTCGCGAATCACAATGCCTTCAATTTGCTTGCAAAGTATAGA
TCAACACACCTGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTTCAGGCCTTGTCGCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGT
Intron 9 GTAAACAGTG ... TTTGGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.18 | 1538.8 | 120.3 | 1355.3 |
| A2 | 33.81 | 1235.3 | 75.8 | 1095.1 |
| A3 | 31.17 | 1404.4 | 92.9 | 1201.1 |
| A4 | 34.63 | 1220.8 | 74.3 | 1135.3 |
| A5 | 34.77 | 594.5 | 44.6 | 520.4 |
| A6 | 36.85 | 632.8 | 28.1 | 594 |
| A7 | 31.69 | 1647.5 | 70.4 | 1466.2 |
| A8 | 31.42 | 591.9 | 41.2 | 533 |
| A9 | 31.51 | 1286.3 | 71.1 | 1127.5 |
| A10 | 31.52 | 1499.5 | 70.5 | 1356.7 |
>TRINITY_DN124868_c0_g1_i2 from sample A1 / Example spliced isoformTAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCAC
AATTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAG
>TRINITY_DN124868_c0_g1_i5 from sample A1 / Example unspliced isoform:TAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTAATAGCTAATGCTGACTTCATATTATTCCCCATTTAAATTGAAAATTAGCATAGACCCATCAAGATTTGATAGGTACCTCGAGGCTGCTAAGCTGGGGT
TGTGTGAACTCAAGATATGCATCCTCCAGCTTCACAACTTGTAGGTTCATGTCATGTCATTCATATCGGACCCAGGTTTAGATGGGTTTGTGTTAGTGTCTATAATCAGTGCATCCAATACATAATGGCACAAAACCCACTTAAAAGAATTGATGGATAATCCCCATCTTTATCCGGGTTGCATAATGCATCTTGCAGTA
ATCGTTAATGGGACTCAGAATATGGATTTTGAATTGTCTATCTGTTGTTTAAATATATTTAAGAGTGCACTCTCATATAATTAGGTCTTTTTGCCACTAAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTT
GAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATgtaaacagtgtccctcctcttgataggtggtgaatgctcatcacttaaatattaaataagcatctataaacttccataattaggctattttcatgtttagcaagaaagaaatctgaagtgtacatgcgttgggttataaattataaatgaa
gtgctcgatttctagtttggttcatatagaaaactttatatgtctttttatatagaaaactttatatgtctctttgtgcggcatggatttaaatttaaaatatggatttaatgtgtgtgtataatatgcatattgttgcaatttattttctcttcttgagtttggaacagTGGTTATGTATTGCTGAGAGATCCTCGCTA
CAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAG
Intron 10 GTGCTTTCCG ... TATTTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.86 | 8118 | 180 | 1530 |
| A2 | 14.76 | 8486 | 209 | 1470 |
| A3 | 15.28 | 8721 | 270 | 1573 |
| A4 | 16.77 | 8335 | 156 | 1679 |
| A5 | 17.53 | 4183 | 137 | 889 |
| A6 | 17.37 | 3359 | 126 | 706 |
| A7 | 15.06 | 9399 | 289 | 1666 |
| A8 | 14.95 | 3044 | 59 | 535 |
| A9 | 15.98 | 7442 | 236 | 1415 |
| A10 | 15.69 | 9228 | 291 | 1717 |
>TRINITY_DN43804_c0_g2_i9 from sample A6 / Example spliced isoformTTCCATCCATCGTGTTGGAACCCTTTTGAATTAAATCAACCCACCATTCCATACATCGTGTTCATACCGTTCATTCTGAACGGTACGACAACGACTCCGGCTCGTGCCTGGTAGACCTAACAACTCAAATGCACCATACAAATCTGACCTACCCCGGGAAAAGAATTCGCGAATCGCAGCCAATCCCGCATGACAACCAT
GTCTAGTTTGGCCAGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTAGATCAGCTGGTGTCATGCATGGTCGGAGGCGTGACATAATTCAAAACTTACGAGGCAGCCATAGAATATTTAGCAGAGTTGCAGGATTTCACGTCTCGAGCCAAATCATGAATGGAGATAGCAAGTCCACTGCTGCTTCCACTGTTG
CAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTACTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAGCTT
CAAGAGAAGCGGCTAATGCATATTATTCGCCAATACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTATTTTCAGGCGTCC
ACAGGGTCTTTACATAAGCTTGAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGAGTCCGTCCTTCCG
AGTGCCTTCCAATAACAATTGATGTGGGGACTAACAATGAAATGCTGCTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTACAGGACAGGAATATGATGATCT
>TRINITY_DN43804_c0_g2_i14 from sample A6 / Example unspliced isoform:ATAATCCCATAAAATCCACCCTTAGATCAGCTGGTGTCATGCATGGTCGGAGGCGTGACATAATTCAAAACTTACGAGGCAGCCATAGAATATTTAGCAGgtgctttccgcgtgaggagggtctcctggactttcagatgggctgccctgccacctaccttcctgcagtctatctctctatatatacaataccaaggcct
tttctataatttgaatcaatcacaccagcccggtaactcaccagatcagctggtgtcatgcatggtcggaggcgtgacataattcaaaacttacgagctgtcttcaatctgtgtggcagccatagaatatttagcagAGTTGCAGGATTTCACGTCTCGAGCCAAATCATGAATGGAGATAGCAAGTCCACTGCTGCTTC
CACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTACTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACAC
AAGAGCTTCAAGAGAAGCGGCTAATGCATATTATTCGCCAATACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTATTTTC
AGGCGTCCACAGGGTCTTTACATAAGCTTGAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGAGTCCG
TCCTTCCGAGTGCCTTCCAATAACAATTGATGTGGGGACTAACAATGAAATGCTGCTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTACAGGACAGGAATATGATGATCT
Intron 11 GTCATTTATT ... CGTTGAGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 2 |
| A2 | 33.33 | 1 | 0 | 1 |
| A3 | 100 | 0 | 6 | 6 |
| A4 | 100 | 0 | 1 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 100 | 0 | 0 | 5 |
| A7 | 50 | 5 | 3 | 7 |
| A8 | 100 | 0 | 1 | 1 |
| A9 | 100 | 0 | 0 | 2 |
| A10 | 55.56 | 4 | 4 | 6 |
>TRINITY_DN44092_c1_g1_i12 from sample A9 / Example spliced isoformGAAATTATGCGGCGAACAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGATGGGACCACCAACACAGTTGAGAACTACCTTCCGCAAGTAAAACGGTTTCGCATTGAAAATGGAACCCTTCTGAATTAAATCAACCCAGTGACACCATTCCATCCATCGTGCTCTTACGGTTGATTCTGAACGGTACGAC
AACGACTCCGGCTCGTGCCTGGTGGACCTAACAACCCAAATGCATACTATAAAACCCTGACCAACCCCGGGAAAAGAATTCGCGAATCGCAGGCTCGCAGCCAATATCGCATGACAACCATGTCTAGTTTGGCCAGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTCGATCAGATGGTGTCATGCATGGACGG
AGGCGTGACATAATACGAAACTTACCAAGCAGCCATAGAATATTTAGCAGAGTTGCAGGATTTCACGTCTCAAGCCAAATCATGAATGGATATAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGT
ATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATATGACACAAGAGCTTCAAGAGAAGCGGCTAATGCATATTATTCGCCAATACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAA
GGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTATTTTCAGGCGTCCACAGGGTCTTTACATAAGCTTGAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTT
ACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGAGTCCGTCCTTCCGAGTGCCTTCCAATAACAATTGATGTGGGGACTAACAATGAAATGCTACTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTAC
AGGACAGGAATATGATGATCTTCTCAACGAGTTTATGTATGCTGCCAAACAAGCTTATGGAGAGAAAGTACTTATCCAGTTTGAAGACTTCGCGAATCACAATGCCTTCAATTTGCTTGCAAAGTATAGATCAACACACCTGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTTCAGGCCTTGTCGCAT
CATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGT
>TRINITY_DN44092_c1_g1_i5 from sample A9 / Example unspliced isoform:GAAATTATGCGGCGAACAGGTCAAGTATTTACATAATATTGAAATTATGCGGCGAACAGgtcatttattcatagttccaagctgcaaattcacaattggtacgatttttctgagacaccgtcgtttgatttctactgagtgtatcattttctccgttgagcagATGGGACCACCAACACAGTTGAGAACTACCTTCCGCA
AGTAAAACGGTTTCGCATTGAAAATGGAACCCTTCTGAATTAAATCAACCCAGTGACACCATTCCATCCATCGTGCTCTTACGGTTGATTCTGAACGGTACGACAACGACTCCGGCTCGTGCCTGGTGGACCTAACAACCCAAATGCATACTATAAAACCCTGACCAACCCCGGGAAAAGAATTCGCGAATCGCAGGCTC
GCAGCCAATATCGCATGACAACCATGTCTAGTTTGGCCAGCGTTTCGTCGATGAATAATCCCATAAAATCCACCCTTCGATCAGATGGTGTCATGCATGGACGGAGGCGTGACATAATACGAAACTTACCAAGCAGCCATAGAATATTTAGCAGAGTTGCAGGATTTCACGTCTCAAGCCAAATCATGAATGGATATAGC
AAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAGGTCTTCTACCGCCTGCTCATAT
GACACAAGAGCTTCAAGAGAAGCGGCTAATGCATATTATTCGCCAATACAGTACACCCTTGCAGAAATACATGGCTTTGATGGACCTTGAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCATGATTGATCATGTCGAAGAGTTGCTTCCTATAGTCTATACACCAACAGTGGGGGAAGCTTGCCAAAAATATGGAACTA
TTTTCAGGCGTCCACAGGGTCTTTACATAAGCTTGAAAGAAAAGGGCAAGGTTCATGATGTTTTGAGAAACTGGCCTGAAAAGAATATTAAGGTCATTGTTGTTACTGATGGTGAACGCATTTTGGGACTGGGAGACCTTGGGTGCCAGGGTATGGGGATCCCTGTTGGAAAACTAGCACTGTACACAGCACTTGGTGGA
GTCCGTCCTTCCGAGTGCCTTCCAATAACAATTGATGTGGGGACTAACAATGAAATGCTACTAAATGATGAGTTCTACATAGGACTGAGGCAGAAGCGTGCTACAGGACAGGAATATGATGATCTTCTCAACGAGTTTATGTATGCTGCCAAACAAGCTTATGGAGAGAAAGTACTTATCCAGTTTGAAGACTTCGCGAA
TCACAATGCCTTCAATTTGCTTGCAAAGTATAGATCAACACACCTGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTTCAGGCCTTGTCGCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGT
Intron 12 GTAACAGCTA ... CCTCATTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.42 | 663.3 | 384.3 | 67.2 |
| A2 | 23.09 | 591.2 | 381.7 | 40.7 |
| A3 | 22.64 | 609.8 | 385.1 | 48.8 |
| A4 | 23.94 | 637 | 446.2 | 51 |
| A5 | 23.3 | 296.7 | 189.5 | 23.2 |
| A6 | 25.6 | 269.2 | 193.3 | 10.3 |
| A7 | 21.57 | 644.3 | 456.1 | 37.9 |
| A8 | 17.59 | 254.1 | 158.4 | 30.3 |
| A9 | 17.92 | 573.6 | 360.7 | 51.6 |
| A10 | 19.5 | 609.9 | 420.9 | 35.3 |
>TRINITY_DN124868_c0_g1_i4 from sample A1 / Example spliced isoformTAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCAC
AATGTAAACAGTGTCCCTCCTCTTGATAGGTGGTGAATGCTCATCACTTAAATATTAAATAAGCATCTATAAACTTCCATAATTAGGCTATTTTCATGTTTAGCAAGAAAGAATTCTGAAGTGTGCATGCGTTGGGTTATAAATTATAAATGAAGTGCTCGATTTCTAGTTTGGTTCATATAGAAAACTTTATATGTCTC
TTTATATAGAAAATTTTATATGTCTCTTTGTGCGGCATGGATTTAAATTTAAAATATGGATTTAATGTGTGTATAATATGCATATTGTTGCAATTTATTTTCTCTTCTTGAGTTTGGAACAGTGGTTATGTATTGCTGAGAGATCCTCGCTACAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGT
ACGAG
>TRINITY_DN124868_c0_g1_i5 from sample A1 / Example unspliced isoform:TAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGgtaatagctaatgctgacttcatattattccccatttaaattgaaaattagcatagacccatcaagatttgataggtacctcgaggctgctaagctggggt
tgtgtgaactcaagatatgcatcctccagcttcacaacttgtaggttcatgtcatgtcattcatatcggacccaggtttagatgggtttgtgttagtgtctataatcagtgcatccaatacataatggcacaaaacccacttaaaagaattgatggataatccccatctttatccgggttgcataatgcatcttgcagta
atcgttaatgggactcagaatatggattttgaattgtctatctgttgtttaaatatatttaagagtgcactctcatataattaggtctttttgccactaagatcaatcagtgacgaggtggagcgttgttataaccctcattgagGTTCGATTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTGCCGTCAGCAGTT
GAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATGTAAACAGTGTCCCTCCTCTTGATAGGTGGTGAATGCTCATCACTTAAATATTAAATAAGCATCTATAAACTTCCATAATTAGGCTATTTTCATGTTTAGCAAGAAAGAAATCTGAAGTGTACATGCGTTGGGTTATAAATTATAAATGAA
GTGCTCGATTTCTAGTTTGGTTCATATAGAAAACTTTATATGTCTTTTTATATAGAAAACTTTATATGTCTCTTTGTGCGGCATGGATTTAAATTTAAAATATGGATTTAATGTGTGTGTATAATATGCATATTGTTGCAATTTATTTTCTCTTCTTGAGTTTGGAACAGTGGTTATGTATTGCTGAGAGATCCTCGCTA
CAACAAAGGTTTGGCATTCAGAGATGACGAAAGGGATTATCACTATGTACGAG
Intron 13 GTAACAGCTA ... ATATAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.63 | 68 | 67 | 24 |
| A2 | 47.95 | 89 | 82 | 12 |
| A3 | 53.85 | 66 | 77 | 18 |
| A4 | 46.4 | 119 | 103 | 19 |
| A5 | 44.29 | 39 | 31 | 14 |
| A6 | 45.16 | 34 | 28 | 3 |
| A7 | 37.35 | 52 | 31 | 4 |
| A8 | 41.18 | 20 | 14 | 8 |
| A9 | 47.93 | 63 | 58 | 9 |
| A10 | 38.75 | 49 | 31 | 2 |
>TRINITY_DN107746_c0_g1_i5 from sample A3 / Example spliced isoformATGAATGGATATAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGGTCTTTTTGCCACTAAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTCAGGTTCGATTTCTCAAGTGGGTGGTGCGCTT
TCATAAGGGGGCTGCCGTCAGCAGTTGAGCCATAATGGCCGTTGAGTCAAGTTGGGTGATCACATGCCCCACAATGTAAACAGTGTCCCTCCTCTTGATAGGTGGTGAATGCTCATCACTTAAATATTAAATAAGCATCTATAAACTTCCATAATTAGGCTATTTTCATGTTTAGCAAGAAAGAATTCTGAAGTGTGCAT
GCGTTGGG
>TRINITY_DN107746_c0_g1_i1 from sample A3 / Example unspliced isoform:ATGAATGGATATAGCAAGTCCACTGTTGCAGGAGGCGTCCATGATGTCTATGGTGAAGATAGGGCTTCGGAAGAGCAGATTATCACTCCTTGGAGCCGAACAGTTGCCAGgtaacagctaatgttgagttcatattattccctcatttaaattggaaattagcatagacccatcaagatttgataggtacctcgaggctg
ctaagctggggttgtgtgaactcaagatatgcatcctccagcttcacaacttgtaggttcatgtcatgacattcatatcggatccaggtttagatgggtttgtgttagtgtctataatcagtgcatccaatacataatggcacaaaacccacttaaaagaattgatggataatccccatctttatccgggttgcataatg
catcttgcagtaatcgttaatgggactcagaatatggattttgaattgtctatctgttgtttaaatatatttaagagtgcactctcatataattagGTCTTTTTGCCACTAAGATCAATCAGTGACGAGGTGGAGCGTTGTTATAACCCTCATTGAGGTTCGTTTTCTCAAGTGGGTGGTGCGCTTTCATAAGGGGGCTG
CCGTCAGCAGTTAAACCATGATGGCTGTTGAGT