NA ----> NA
Intron 1 GTTAACTCTA ... TGATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 0 |
| A2 | 66.67 | 1 | 3 | 1 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 100 | 0 | 2 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 38.46 | 4 | 0 | 5 |
| A7 | 65.22 | 4 | 11 | 4 |
| A8 | 52.38 | 5 | 2 | 9 |
| A9 | 71.43 | 2 | 1 | 9 |
| A10 | 44.44 | 5 | 6 | 2 |
>TRINITY_DN44065_c0_g1_i1 from sample A8 / Example spliced isoformCGAAACCATATTCTTGTTGCTACGAGATGCTTAAAGGATGAAGTCTGTTACTCTGTCAACATATCGTTAGATTGCCAATTTAACTGCAAATAAAATCGCAGAGAATCTCGGAACTGGAAGAAAGCTATCATTGGACCACGACTGTTACCGAATGTTCTTGCACAGGAATCGTTCCACTTGACAGAAATGAGGTCATGGAG
GTTACACCAGGAATTATCACTAAATTTGTTTACTGAGATCCAAAATCACCGACAGAATAAAAGATAAATGAACCAACTGTACATGAGGATTATCTACTTTGTTGTAATTTATTGAGAAGACCGAGATTCGTTCATTTTCCGATACCTTTACTCAACCGAAAACACCAAAGAAAGAGCTCTGAATTTACTGTCAAGATTCT
GTCGAATGAAGACTGCCAGAAATTGTGGAAGTTTAACCGAAATTGCAGAATGTGCCAGATTCTTAAGAGAACTTCACCAAAATACAAGCTATAATCAACACCACGACTTCACCAAAATCAATGAGGTTAAGATTTGTGAAGGAACATTTATATGGAGCGTAAATGATGCAGCGTGTTTTAACCTCAGTAACAAGGTCTTA
CTCAAAGTATAAAGGAAAGTAGCGCAGCATGGAATACAACATAGGAAATTTATGAGGGTGAAGATCGCATAGCAACTTTCCTGATTTCAAAAGGGAAAAGAACTCGTTAAATTGGCCAAGAAAGTGGCAGCTATTTCGTGGACTTCGCGAAGGATAAGAAAACTAAAGAGCGGTTTAACGATAACGTTGGAGTTCCAGTA
TTGGTCTTGATAGCCTATAAAAACATCGAGGAAGGAGGGACGTTCCAGGAAACTGGACGAAACTATTTTATTTTAGTTTTTCTGTATGTTTCTCTGTTAGGGATGGTCTCCATAAACCAGAGAGATGACTGTGTTTTTCTTTATGTTTTATTTTCTTGTTCCTATGCAAAACTGAGTTTTTCTCATGGAACCAGAGATGG
AGGTGTTTCCTAAGACTGATATATCAAAACTCTTTTGAAACTATGGTGCTTTGAAAGGACATTGGAACCTGTTCTCACAGCTTTGTAAAATTTCTTTTATGGAGTAATTGAAGCAGAA
>TRINITY_DN44065_c0_g1_i4 from sample A8 / Example unspliced isoform:CGAAACCATATTCTTGTTGCTACGAGATGCTTAAAGGATGAAGTCTGTTACTCTGTCAACATATCGTTAGATTGCCAATTTAACTGCAAATAAAATCGCAGAGAATCTCGGAACTGGAAGAAAGCTATCATTGGACCACGACTGTTACCGAATGTTCTTGCACAGGAATCGTTCCACTTGACAGAAATGAGGTCATGGAG
GTTACACCAGGAATTATCACTAAATTTGTTTACTGAGATCCAAAATCACCGACAGAATAAAAGATAAATGAACCAACTGTACATGAGGATTATCTACTTTGTTGTAATTTATTGAGAAGACCGAGATTCGTTCATTTTCCGATACCTTTACTCAACCGAAAACACCAAAGAAAGAGCTCTGAATTTACTGTCAAGATTCT
GTCGAATGAAGACTGCCAGAAATTGTGGAAGTTTAACCGAAATTGCAGAATGTGCCAGATTCTTAAGAGAACTTCACCAAAATACAAGCTATAATCAACACCACGACTTCACCAAAATCAATGAGGTTAAGATTTGTGAAGGAACATTTATATGGAGCGTAAATGATGCAGCGTGTTTTAACCTCAGTAACAAGGTCTTA
CTCAAAGTATAAAGGAAAGTAGCGCAGCATGGAATACAACATAGGAAgttaactctaatgatataattttttatttttacttcttcaaagaaatattagggttattattattcccattgaataacggtccgcacgaagttgtatccaacctaaacgccgagaacctgataaacttgcactggaataattacacataagag
agctcaacaaacgaaagcggccacgaagattgaaatttttgttactcaattaattaaaagaaaagggaagactcctatttttctcttttaattttaaccttcgtagtaatttatatcttctcttctcaataagtgcaattagatatcaagtttaatgttcttccttttaattgatgtgcagATTTATGAGGGTGAAGATC
GCATAGCAACTTTCCTGATTTCAAAAGGGAAAAGAACTCGTTAAATTGGCCAAGAAAGTGGCAGCTATTTCGTGGACTTCGCGAAGGATAAGAAAACTAAAGAGCGGTTTAACGATAACGTTGGAGTTCCAGTATTGGTCTTGATAGCCTATAAAAACATCGAGGAAGGAGGGACGTTCCAGGAAACTGGACGAAACTAT
TTTATTTTAGTTTTTCTGTATGTTTCTCTGTTAGGGATGGTCTCCATAAACCAGAGAGATGACTGTGTTTTTCTTTATGTTTTATTTTCTTGTTCCTATGCAAAACTGAGTTTTTCTCATGGAACCAGAGATGGAGGTGTTTCCTAAGACTGATATATCAAAACTCTTTTGAAACTATGGTGCTTTGAAAGGACATTGGA
ACCTGTTCTCACAGCTTTGTAAAATTTCTTTTATGGAGTAATTGAAGCAGAA
Intron 2 GTAGTGAGCG ... GTTGGTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1.3 | 1 | 5 |
| A2 | 12.26 | 4.3 | 0 | 1 |
| A3 | 33.33 | 4 | 2 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 33.33 | 1 | 1 | 0 |
| A6 | 9.26 | 10 | 2 | 0 |
| A7 | 55.15 | 2.3 | 1 | 4 |
| A8 | 17.86 | 5 | 2 | 0 |
| A9 | 18.28 | 9 | 2 | 2 |
| A10 | 77.78 | 1.3 | 0 | 4 |
>TRINITY_DN39798_c0_g1_i4 from sample A9 / Example spliced isoformAATCGCAGAGAATCTCGGAACTGGAAGAAAGCTATCATTGGACCACGACTGTTACCGAATGTTCTTGCACAGGAATCGTTCCACTTGACAGAAATGAGGTCATGGAGGTTACACCAGGAATTATCACTAAATTTGTTTACTGAGATCCAAAATCACCGACAGAATAAAAGATAAATGAACCAACTGTACATGAGGATTAT
CTACTTTGTTGTAATTTATTGAGAAGACCGAGATTCGTTCATTTTCCGATACCTTTACTCAACCGAAAACACCAAAGAAAGAGCTCTGAATTTACTGTCAAGATTCTGTCGAATGAAGACTGCCAGAAATTGTGGAAGTTTAACCGAAATTGCAGAATGTGCCAGATTCTTAAGAGAACTTCACCAAAATACAAGCTATA
ATCAACACCACGACTTCACCAAAATCAATGAGGTTAAGATTTGTGAAGGAACATTTATATGGAGCGTAAATGATGCAGCGTGTTTTAACCTCAGTAACAAGGTCTTACTCAAAGTATAAAGGAAAGTAGCGCAGCATGGAATACAACATAGGAAGTTAACTCTAATGATATAATTTTTTATTTTTACTTCTTCAAAGAAA
TATTAGGGTTATTATTATTCCCATTGAATAACGGTCCGCACGAAGTTGTATCCAACCTAAACGCCGAGAACCTGATAAACTTGCACTGGAATAATTAC
>TRINITY_DN39798_c0_g1_i5 from sample A9 / Example unspliced isoform:AATCGCAGAGAATCTCGGAACTGGAAGAAAGCTATCATTGGACCACGACTGTTACCGAATGTTCTTGCACAGGAATCGTTCCACTTGACAGAAATGAGGTCATGGAGGTTACACCAGGAATTATCACTAAATTTGTTTACTGAGATCCAAAATCACCGACAGAATAAAAGATAAATGAACCAACTGTACATGAGGATTAT
CTACTTTGTTGTAATTTATTGAGAAGACCGAGATTCGTTCATTTTCCGATACCTTTACTCAACCGAAAACACCAAAGAAAGAGCTCTGAATTTACTGTCAAGATTCTGTCGAATGAAGACTGCCAGAAATTGTGGAAGTTTAACCGAAATTGCAGAATGTGCCAGATTCTTAAGAGAACTTCACCAAAATACAAGCTATA
ATCAACACCACGACTTCACCAAAATCAATGAGGTTAAGgtagtgagcgaaagatgaaatttgttttcccggggttaacttatgtaaagaataagttcatcatatacgcagtgttacaatggataaaccagatctcctacatatatatatatagccaatgccaacgcgtatctctcatgaggaaatttgcaccggtttgca
aataaaatattaccagaagagattaccattgtacaacagtattcagggagatcattttatttacttttataacacttcgctagttttattgtctttacttttacaaatctcatcatataaagaattactcatgtgtggtttcctgttggtgcagATTTGTGAAGGAACATTTATATGGAGCGTAAATGATGCAGCGTGTT
TTAACCTCAGTAACAAGGTCTTACTCAAAGTATAAAGGAAAGTAGCGCAGCATGGAATACAACATAGGAAGTTAACTCTAATGATATAATTTTTTATTTTTACTTCTTCAAAGAAATATTAGGGTTATTATTATTCCCATTGAATAACGGTCCGCACGAAGTTGTATCCAACCTAAACGCCGAGAACCTGATAAACTTGC
ACTGGAATAATTAC