sp|Q9SYH3|SPL2P_ARATH ----> E3 ubiquitin-protein ligase SPL2
Intron 1 GTAAATTTTG ... AGCCGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.3 | 155 | 40 | 16 |
| A2 | 11.3 | 153 | 20 | 19 |
| A3 | 10.82 | 169 | 28 | 13 |
| A4 | 10.25 | 162 | 28 | 9 |
| A5 | 12.31 | 114 | 23 | 9 |
| A6 | 12.17 | 653 | 114 | 67 |
| A7 | 9.34 | 694 | 99 | 44 |
| A8 | 12.1 | 516 | 92 | 50 |
| A9 | 10.52 | 702 | 99 | 66 |
| A10 | 11.22 | 649 | 135 | 29 |
>TRINITY_DN105877_c0_g2_i7 from sample A4 / Example spliced isoformGTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATG
ACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGT
GGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGTGCTTATACAACGAATGGAGGGGTCT
CTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATTTGCACCCAGTCCAAG
CATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTCCGACCTTACGAAAGATCAACTGGTA
GAAGATATAACCATTGGAAAAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGGAATTGGCATAGATGGAAAGAGTGGAGACGCCAGAGGCAGGCTCAGCAAGCAAGAGATGATCCACCTGTGTCAAATGCAGCTGAGGATGAATCTGGGAATGTGCCAGA
TGGGGAATTATGTGTTGTTTGTCTGATGAGACGGAGAAGATCTGCTTTTATTCCTTGTGGGCATCATGTTTGCTGTTCAAGGTGCGCTCAGCTAGTGGAGCGTGACTCCAATCCAAAATGTCCTGTATGCAGACAGAATGTACGGAACTCAGTGAGGATATATGATTCTTGAAATGTAAATTTTTGCCATAGCACAGTGT
CAGTGTAGTTGGCAATCATTAAAAACATGGCACAATTTTCTGTGCTGTCAGTATATAAATTTGAATTTGTATAGAACCATATAGATTATATTTTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTATGCTGTCATTATCCAT
GTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGGTAAATAGAATTGTGAGCATAATATTCAGCATAGCGTCCATATATATAAATTCCCTTGATTCAAAAAAAAAAAAAAAAAAAAC
>TRINITY_DN105877_c0_g2_i3 from sample A4 / Example unspliced isoform:GTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATG
ACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGT
GGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGgtaaattttgtgtgagtacgttattt
tgtccatttgcttaattctttaaattcaaactgaatttaaggttatactttgggattcgactctttgacctctcgctggcactgtggaaaccccaattcgaatcaaaatagggcgtataagcctggtttgcttgatgattctgttcccagagtttgaaccgctgatgtctcgtgtatgatcagagccgagaagTGCTTAT
ACAACGAATGGAGGGGTCTCTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTACCAGCTTTCAAGTAAAAACTGTGTTTTTCTTCATTGTGTCAAAAGTCAGTTTATTCAAGGAATTAAAATGGAATTATTAGGCATATGTTGCAGGATACTCCC
CATGAAAGCTGTAGCTATATCTGATTCCCATATGTACACTGTGTCATTACTCACTAGTGGTCAACAGACTGAACTGCATCCACCTGGAACCTTGATCTCTTCCAGCCATAACTGTACAATTATGCACCTTTGGCACCCTGCAAGCCCTAAAGCATCA
Intron 2 GTGAGTATTT ... CTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.93 | 146 | 57 | 25 |
| A2 | 21 | 79 | 17 | 25 |
| A3 | 24.64 | 78 | 29 | 22 |
| A4 | 20.82 | 116 | 41 | 20 |
| A5 | 23.81 | 48 | 20 | 10 |
| A6 | 21.26 | 413 | 126 | 97 |
| A7 | 20.76 | 458 | 141 | 99 |
| A8 | 21.21 | 431 | 150 | 82 |
| A9 | 20.23 | 483 | 139 | 106 |
| A10 | 21.36 | 348 | 101 | 88 |
>TRINITY_DN105877_c0_g2_i7 from sample A4 / Example spliced isoformGTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATG
ACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGT
GGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGTGCTTATACAACGAATGGAGGGGTCT
CTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATTTGCACCCAGTCCAAG
CATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTCCGACCTTACGAAAGATCAACTGGTA
GAAGATATAACCATTGGAAAAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGGAATTGGCATAGATGGAAAGAGTGGAGACGCCAGAGGCAGGCTCAGCAAGCAAGAGATGATCCACCTGTGTCAAATGCAGCTGAGGATGAATCTGGGAATGTGCCAGA
TGGGGAATTATGTGTTGTTTGTCTGATGAGACGGAGAAGATCTGCTTTTATTCCTTGTGGGCATCATGTTTGCTGTTCAAGGTGCGCTCAGCTAGTGGAGCGTGACTCCAATCCAAAATGTCCTGTATGCAGACAGAATGTACGGAACTCAGTGAGGATATATGATTCTTGAAATGTAAATTTTTGCCATAGCACAGTGT
CAGTGTAGTTGGCAATCATTAAAAACATGGCACAATTTTCTGTGCTGTCAGTATATAAATTTGAATTTGTATAGAACCATATAGATTATATTTTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTATGCTGTCATTATCCAT
GTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGGTAAATAGAATTGTGAGCATAATATTCAGCATAGCGTCCATATATATAAATTCCCTTGATTCAAAAAAAAAAAAAAAAAAAAC
>TRINITY_DN105877_c0_g2_i5 from sample A4 / Example unspliced isoform:TTTTGTCCTTTTGTTTGTCTACTTGTATTGTGGTTTAAAAGTGGAACATTAGAATGCATCCTTGCTCTTTTATGATGGAAAGAATCTTAAGAGAAACCATACACTGTACAGTAACTTATGTTGTTTTGTTACAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGAC
GAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATTTGCACCCAGTCCAAGCATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGTATGTTGTTTTTGTGGAACATTAAGATTCACCTGGTATTTTTTTGTTACTGAAATTACCAAGCATATTTTTTGGGAATCCTGCAACTTATATTT
GGTGGGTAGTCAAGTAAATTCACCCACTGGTAAAAACCTATTCTTCTATTTCCTTTTCCTTTTCCATGGCTTCTGACTATTTTGAACACTATGTTGAGTCAAGGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTA
AGTCATGCAAGTGGCTACCATATTTCTTgtgagtatttgaaattttgagtgccaggattgaatggcttttattctagaataagttattttaatatcactaggtccttaaatcttgcttgtccttaaaggaatgcctgagattgtaattaccatgttctctgtgatgaagctggctgtgttatgttataggatgatcagca
atgctttgttggcccatcagttgtatttttgggtcaggctataattgtcttactttgtccagGTCCGACCTTACGAAAGATCAACTGGTAGAAGATATAACCATTGGAAAAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGGTATATCAGTTGGGACAT
TTTGTTGTAGCTGGCCTAGAATCAGTTCCAAGTTTTTTTTCATTTACAAAATGTGTGATGTTTGCAAAATGAAAAGTCGAAAGCAATTTAAGTAATTCATTTAGTCTCCTAGATGCTAAATAATGCACAGAAGAAAAAGCAATTGTGGAGTGCAGTCTGCTGTTTTTTGATCTTTGTACTAAAACAATATCTTTGAAACA
GTATGTATTTTCTGGTGGGTTGTGCTGATATTTCAACTTAATTGAGTTCTTATCTTGAATGTGTTGAATTATACAGTTGAGATTCCACTGACCACTTCTGGTGCATACCTGAAACCTTCTAAGGATTAAGATTCTTTTCAATGTTGTATGCAAGGGACCATTCGTG
Intron 3 GTATGTTGTT ... TTGAGTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.26 | 142 | 61 | 35 |
| A2 | 21.51 | 104 | 37 | 20 |
| A3 | 22.22 | 112 | 49 | 15 |
| A4 | 23.96 | 119 | 40 | 35 |
| A5 | 21.39 | 68 | 23 | 14 |
| A6 | 21.18 | 540.3 | 190.3 | 100 |
| A7 | 22.18 | 581.3 | 203.3 | 128 |
| A8 | 23.36 | 502 | 177 | 129 |
| A9 | 21.69 | 604.7 | 225 | 110 |
| A10 | 19.09 | 566 | 176 | 91 |
>TRINITY_DN128650_c0_g1_i1 from sample A1 / Example spliced isoformAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATGACCG
CGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGTGGTG
ATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGAGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGGTAAATTTTGTTGCTTATACAACGAATGGA
GGGGTCTCTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATTTGCACCCA
GTCCAAGCATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTCCGACCTTACGAAAGATCA
ACTGGTAGAAGATATAACCATTGGAAAAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGGAATTGGCATAGATGGAAAGAGTGGAGACGCCAGAGGCAGGCTCAGCAAGCAAGAGATGATCCACCTGTGTCAAATGCAGCTGAGGATGAATCTGGGAATG
TGCCAGATGGGGAATTATGTGTTGTTTGTCTGATGAGACGGAGAAGATCTGCTTTTATTCCTTGTGGGCATCATGTTTGCTGTTCAAGGTGCGCTCAGCTAGTGGAGCGTGACTCCAATCCAAAATGTCCTGTATGCAGACAGAATGTACGGAACTCAGTGAGGATATATGATTCTTGAAATGTAAATTTTTGCCATAGC
ACAGTGTCAGTGTAGTTGGCAATCATTAAAAACATGGCACAATTTTCTGTGCTGTCAGTATATAAATTTGAATTTGTATAGAACCATATAGATTATATTTTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTATGCTGTCAT
TATCCATGTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGGTAAATAGAATTGTGAGCATAATATTCAGCATAGCGTCCATATATATAAATTCCCTTGATTCAAAGTTTGAATGGTTTGATTTGATTGTGACATGTTGGAGCCATTTGAAATGTGATTAAAGTTTT
ATATCTGCACCCG
>TRINITY_DN128650_c0_g1_i2 from sample A1 / Example unspliced isoform:AAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATGACCG
CGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGTGGTG
ATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGAGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGTGCTTATACAACGAATGGAGGGGTCTCTTT
GGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATTTGCACCCAGTCCAAGCATC
TCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGgtatgttgtttttgtggaacattaagattcacctggtatttttttgttactgaaattaccaagtatattttttgggaatcctgcaacttatatttggtgggtagtcaagtaaattcacccactggtaaaaacttattcttctatttccttttccttt
tccatggcttctgactattttgaacactatgttgagtcaagGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTGAGTATTTGAAATTTTGAGTGCCAGGATTGAA
TGGCTA
Intron 4 GTAAATAGAA ... GCCTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.69 | 13 | 58 | 0 |
| A2 | 74.51 | 13 | 38 | 0 |
| A3 | 71.15 | 15 | 37 | 6 |
| A4 | 85.29 | 5 | 29 | 0 |
| A5 | 68.89 | 14 | 31 | 0 |
| A6 | 79.32 | 223.5 | 857 | 1 |
| A7 | 78.42 | 160.5 | 583 | 0 |
| A8 | 78.78 | 333 | 1236 | 0 |
| A9 | 77.46 | 239 | 821 | 0.5 |
| A10 | 80.41 | 67 | 275 | 2 |
>TRINITY_DN43784_c0_g1_i6 from sample A7 / Example spliced isoformTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTATGCTGTCATTATCCATGTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGATAACAGAGGCACCAATATCTGGCTG
GATAATGATTCCAAGTAGCAGGTATTGGAATGCTTTTCCTGCTCAAGTGCAAGCAACTTTTCTTCCCTGGTTATCTTTTTGGTGTTGGTCTGTAGGGGG
>TRINITY_DN43784_c0_g1_i3 from sample A7 / Example unspliced isoform:CTCCATCATAGTTGGGTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAA
CAATGGCGTCCCATGACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCT
CCGCAGGACTATGGTGGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGTGCTTATACAA
CGAATGGAGGGGTCTCTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATT
TGCACCCAGTCCAAGCATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTCCGACCTTACG
AAAGATCAACTGGTAGAAGATATAACCATTGGAAAAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGGAATTGGCATAGATGGAAAGAGTGGAGACGCCAGAGGCAGGCTCAGCAAGCAAGAGATGATCCACCTGTGTCAAATGCAGCTGAGGATGAATC
TGGGAATGTGCCAGATGGGGAATTATGTGTTGTTTGTCTGATGAGACGGAGAAGATCTGCTTTTATTCCTTGTGGGCATCATGTTTGCTGTTCAAGGTGCGCTCAGCTAGTGGAGCGTGACTCCAATCCAAAATGTCCTGTATGCAGACAGAATGTACGGAACTCAGTGAGGATATATGATTCTTGAAATGTAAATTTTT
GCCATAGCACAGTGTCAGTGTAGTTGGCAATCATTAAAAACATGGCACAATTTTCTGTGCTGTCAGTATATAAATTTGAATTTGTATAGAACCATATAGATTATATTTTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTAT
GCTGTCATTATCCATGTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGgtaaatagaattgtgagcataatattcagcatagcgtccatatatataaattcccttgattcaaattttgaatggtttgatttgattgtgacatgttggagccatttgaaatgtgatt
aaagttttatatctgcaccctatgttattgtttgagattttatattttagacctctggcttatcatctaagcttggttctctgaggttgaatgacaaaatagtaccattattattatttcaggtagcataatcttagtcagtcctttcaagtaaaatagtatccgttccttcatcagagtgcatgcagtattattacaaa
agtttttatgcagggccctctaagtggggtaccagaaactcatgttgaatttggccttggcagATAACAGAGGCACCAATATCTGGCTGGATAATGATTCCAAGTAGCAGGTATTGGAATGCTTTTCCTGCTCAAGTGCAAGCAACTTTTCTTCCCTGGTTATCTTTTTGGTGTTGGTCTGTAGGGGG
Intron 5 GTATATCAGT ... TCTTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.63 | 150 | 25 | 53 |
| A2 | 20.22 | 142 | 31 | 41 |
| A3 | 23.93 | 116 | 23 | 50 |
| A4 | 23.78 | 145 | 25.5 | 65 |
| A5 | 17.79 | 67 | 10 | 19 |
| A6 | 18.52 | 660 | 86 | 214 |
| A7 | 19.58 | 651 | 100 | 217 |
| A8 | 19.98 | 645 | 98 | 224 |
| A9 | 18.76 | 703 | 123.5 | 201 |
| A10 | 19.82 | 544 | 94 | 175 |
>TRINITY_DN43784_c0_g1_i3 from sample A7 / Example spliced isoformCTCCATCATAGTTGGGTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAA
CAATGGCGTCCCATGACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCT
CCGCAGGACTATGGTGGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGTGCTTATACAA
CGAATGGAGGGGTCTCTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATT
TGCACCCAGTCCAAGCATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGTTGGCCTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTCCGACCTTACG
AAAGATCAACTGGTAGAAGATATAACCATTGGAAAAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGGAATTGGCATAGATGGAAAGAGTGGAGACGCCAGAGGCAGGCTCAGCAAGCAAGAGATGATCCACCTGTGTCAAATGCAGCTGAGGATGAATC
TGGGAATGTGCCAGATGGGGAATTATGTGTTGTTTGTCTGATGAGACGGAGAAGATCTGCTTTTATTCCTTGTGGGCATCATGTTTGCTGTTCAAGGTGCGCTCAGCTAGTGGAGCGTGACTCCAATCCAAAATGTCCTGTATGCAGACAGAATGTACGGAACTCAGTGAGGATATATGATTCTTGAAATGTAAATTTTT
GCCATAGCACAGTGTCAGTGTAGTTGGCAATCATTAAAAACATGGCACAATTTTCTGTGCTGTCAGTATATAAATTTGAATTTGTATAGAACCATATAGATTATATTTTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTAT
GCTGTCATTATCCATGTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGGTAAATAGAATTGTGAGCATAATATTCAGCATAGCGTCCATATATATAAATTCCCTTGATTCAAATTTTGAATGGTTTGATTTGATTGTGACATGTTGGAGCCATTTGAAATGTGATT
AAAGTTTTATATCTGCACCCTATGTTATTGTTTGAGATTTTATATTTTAGACCTCTGGCTTATCATCTAAGCTTGGTTCTCTGAGGTTGAATGACAAAATAGTACCATTATTATTATTTCAGGTAGCATAATCTTAGTCAGTCCTTTCAAGTAAAATAGTATCCGTTCCTTCATCAGAGTGCATGCAGTATTATTACAAA
AGTTTTTATGCAGGGCCCTCTAAGTGGGGTACCAGAAACTCATGTTGAATTTGGCCTTGGCAGATAACAGAGGCACCAATATCTGGCTGGATAATGATTCCAAGTAGCAGGTATTGGAATGCTTTTCCTGCTCAAGTGCAAGCAACTTTTCTTCCCTGGTTATCTTTTTGGTGTTGGTCTGTAGGGGG
>TRINITY_DN43784_c0_g1_i1 from sample A7 / Example unspliced isoform:GTTGTTTTTGTGGAACATTAAGATTCACCTGGTATTTTTTTGTTACTGAAATTACCAAGTATATTTTTTGGGAATCCTGCAACTTATATTTGGTGGGTAGTCAAGTAAATTCACCCACTGGTAAAAACTTATTCTTCTATTTCCTTTTCCTTTTCCATGGCTTCTGACTATTTTGAACACTATGTTGAGTCAAGGTTGGC
CTGTTAGACGAAGAAAAGATCTTACCACCTGGCAAAGAGATCACTGCAACTGGCCAATTATATTTATCACATGATGGACATCCTGCTATTAAGTCATGCAAGTGGCTACCATATTTCTTGTGAGTATTTGAAATTTTGAGTGCCAGGATTGAATGGCTTTTATTCTAGAATAAGTTATTTTAATATCACTAGGTCCTTAA
ATCTTGCTTGTCCTTAAAGGAATGCCTGAGATTGTAATTACCATGTTCTCTGTGATGAAGCTGGCTGTGTTATGTTATAGGATGATCAGCAATGCTTTGTTGGCCCATCAGTTGTATTTTTGGGTCAGGCTATAATTGTCTTACTTTGTCCAGGTCCGACCTTACGAAAGATCAACTGGTAGAAGATATAACCATTGGAA
AAACAGTTCTATTTTGGAGTGGCATTGTCCTTAGCACTGCAGCAGTTGTGGTTCTAAGTTACGCAGCTGTCAGgtatatcagttgggacattttgttgtagctggcctagaatcagttccaagttttttttcatttacaaaatgtgtgatgtttgcaaaatgaaaagtcgaaagcaatttaagtaattcatttagtctcc
tagatgctaaataatgcacagaagaaaaagcaattgtggagtgcagtctgctgttttttgatctttgtactaaaacaatatctttgaaacagtatgtattttctggtgggttgtgctgatatttcaacttaattgagttcttatcttgaatgtgttgaattatacagttgagattccactgaccacttctggtgcatacc
tgaaaccttctaaggattaagattcttttcaatgttgtatgcaagggaccattcgtgcataatcagcagatgctagttttggctgaaataggacagtgcatttaattattgaacccgagtacatggatgatttgataaagcaccatgatttttgcagggtagatatttatggagagtgatctcccatcataaacaaagtg
aatactaggatgccttagtatggtccttagcctgaagtatcagagatagtaacaacaaggacacttgaatcaaaaacattataatcaatgcatgctaaatattataaacttataagcatgggaacttgaccaattcaaatcaattgtgatacttccagggcctcaaagtttgaaaccactgtcatttggccaactcttgc
aaaatgggtaagagacccttgaaccaaataaatgtggatgaaactcagatggttgttctaggttctcttatacagattctattacatgaatgtgcagtcatacgactcatacctataaaaaagtcatccttggcattcatgatattagttctgtctggatactcacaaagctgctctctcttcaacgaaacttacatgtc
atagttggttgaagaaacatgtcttaataacccagcagtatgcagatactttattcttggtttactgattagtgtccatgggtatccctttatttgatatgtagttctaggatttggaccttcctacaggcctgcacaatctgattagttattgacaaaacatgaaaataatgttccagatcatgttccatagactgttg
ccattatttcagttaaaaatgattccaaaatttaactaaatgaaatttgcataaagatattgtgtcaaaagatagtttttttctgtcttcttcagGAATTGGCATAGATGGAAAGAGTGGAGACGCCAGAGGCAGGCTCAGCAAGCAAGAGATGATCCACCTGTGTCAAATGCAGCTGAGGATGAATCTGGGAATGTGCC
AGATGGGGAATTATGTGTTGTTTGTCTGATGAGACGGAGAAGATCTGCTTTTATTCCTTGTGGGCATCATGTTTGCTGTTCAAGGTGCGCTCAGCTAGTGGAGCGTGACTCCAATCCAAAATGTCCTGTATGCAGACAGAATGTACGGAACTCAGTGAGGATATATGATTCTTGAAATGTAAATTTTTGCCATAGCACAG
TGTCAGTGTAGTTGGCAATCATTAAAAACATGGCACAATTTTCTGTGCTGTCAGTATATAAATTTGAATTTGTATAGAACCATATAGATTATATTTTTCTAGTTGCAATTTTGTACTGATACAATTTATTTAGGCTCGTGTCTGCAACAGAAACTTTACTCTCTAGGGCAGCTGACAAAATGTATTTATGCTGTCATTAT
CCATGTGCTCATTCTGGAAACATTGGATTAATCGGCTGCTTGGAAGAGGGATGCTGTTGGCATGGCAAATGGTAAATAGAATTGTGAGCATAATATTCAGCATAGCGTCCATATATATAAATTCCCTTGATTCAAATTTTGAATGGTTTGATTTGATTGTGACATGTTGGAGCCATTTGAAATGTGATTAAAGTTTTATA
TCTGCACCCTATGTTATTGTTTGAGATTTTATATTTTAGACCTCTGGCTTATCATCTAAGCTTGGTTCTCTGAGGTTGAATGACAAAATAGTACCATTATTATTATTTCAGGTAGCATAATCTTAGTCAGTCCTTTCAAGTAAAATAGTATCCGTTCCTTCATCAGAGTGCATGCAGTATTATTACAAAAGTTTTTATGC
AGGGCCCTCTAAGTGGGGTACCAGAAACTCATGTTGAATTTGGCCTTGGCAGATAACAGAGGCACCAATATCTGGCTGGATAATGATTCCAAGTAGCAGGTATTGGAATGCTTTTCCTGCTCAAGTGCAAGCAACTTTTCTTCCCTGGTTATCTTTTTGGTGTTGGTCTGTAGGGGG
Intron 6 GTGAGTACGT ... AGCCGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.49 | 145 | 18 | 16 |
| A2 | 8.75 | 146 | 9 | 19 |
| A3 | 8.26 | 161 | 16 | 13 |
| A4 | 8.61 | 154 | 20 | 9 |
| A5 | 7.23 | 109 | 8 | 9 |
| A6 | 7.42 | 611 | 31 | 67 |
| A7 | 5.65 | 659 | 35 | 44 |
| A8 | 7.33 | 468 | 24 | 50 |
| A9 | 6.19 | 659 | 21 | 66 |
| A10 | 6.05 | 590 | 47 | 29 |
>TRINITY_DN105877_c0_g2_i8 from sample A4 / Example spliced isoformGTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATG
ACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGT
GGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGGTAAATTTTGTTGCTTATACAACGAA
TGGAGGGGTCTCTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTCCCTTTTGTTTTAATAGAAAATGACAGGCTGCAGAATCTTAACTTTGTGCACATTAACTTGGACGAGTCAAGGCACAAATTGCCACTTATAACAGTTTATCATCATTTGCA
CCCAGTCCAAGCATCTCCATATACAGTTTTTCAAGCCATTTTTGGCCGTGGTTATCCGGT
>TRINITY_DN105877_c0_g2_i3 from sample A4 / Example unspliced isoform:GTTTAAAGCATCTTGCAACAAATTGTATATCCTATGAAACCTGCAAACCAAATTTTTAATTCTCAAAGCTTTTCGTGCTGGGAGTCCAGGGTTTTAGTCCGGGGAATACCTTGTAAAGCGGCAGTGCCATCTTCAACAGTGCCATATTCAAAAGTAGGATAGGGCACTGGTACAGTAAGAATGAACAATGGCGTCCCATG
ACCGCGAAATCTCTCAGGCAATAACTCGCATAGCCCTCGCAGGGGACGGCGCCGTGCTGGGCCTCGGTCTCGCAGTAATCGCCGTGAGAACATGGTTTAAATTCCACTCACACTCCAAAGCCCTTCAAAGCATACAGCACACACCCGTCTCGCACATAGCAGACTTGAGGTCACTCCTGCCCCCTCCGCAGGACTATGGT
GGTGATAGCGGGAATCGAACCCACGACCCGGTGCAGGCCCATCCCTTGGTTATAGTCAGAGGGAAGGTTCAGCCCACGGCCTCTGTGGAGAGCAGCGGGAATAATGAGAGCGAGGGCGTGCTGATGACGCACAATTCGGGAGACAAGGCCGTGATATTTGAGAAGACACAGACGGTAAATTTTGTgtgagtacgttattt
tgtccatttgcttaattctttaaattcaaactgaatttaaggttatactttgggattcgactctttgacctctcgctggcactgtggaaaccccaattcgaatcaaaatagggcgtataagcctggtttgcttgatgattctgttcccagagtttgaaccgctgatgtctcgtgtatgatcagagccgagaagTGCTTAT
ACAACGAATGGAGGGGTCTCTTTGGGTGGAGTGCTGATTGGCGAGCACTGTTTGGAGGATCATTGAAAGAACAAGTCACAACTTCTGTGAGAAAGGTACCAGCTTTCAAGTAAAAACTGTGTTTTTCTTCATTGTGTCAAAAGTCAGTTTATTCAAGGAATTAAAATGGAATTATTAGGCATATGTTGCAGGATACTCCC
CATGAAAGCTGTAGCTATATCTGATTCCCATATGTACACTGTGTCATTACTCACTAGTGGTCAACAGACTGAACTGCATCCACCTGGAACCTTGATCTCTTCCAGCCATAACTGTACAATTATGCACCTTTGGCACCCTGCAAGCCCTAAAGCATCA