NA ----> NA

Intron 1 GTGCCAGCCA ... ATATCCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	52.21	8	10	7.5
A2	73.33	4	16	6
A3	65.27	12	30	15
A4	70	3	4	10
A5	55.23	6.5	13	3
A6	69.32	37.5	111	58.3
A7	66.92	27.5	69	42
A8	68.72	29.5	69	60
A9	68.8	29.5	87	43
A10	65.9	32.5	82	43.5

>TRINITY_DN43366_c15_g1_i3 from sample A7 / Example spliced isoform

GTAAGAGTAGAGACATGGGGATTCTCGTTCAATCCCCTCGTTCCATTGCAGCAGTTACTCTAAACTCTGGCCCTCAAATTCCTCAATCAATACTTAAATCACTACCATATTCCTATTCACATTCATCACCACTATCTGCGTTTGCTATCTGCAATTGTACTCCAAAGATTAAATTACAGAGCAGAAGGATTCGATCCCGG
ACAACAACAATAAGGAGAGCCAGTGGAAATGGTGGAGGTCTGGACGATGACGAGGAGTCGAGATTTTTGGAGCAGGATGGAAGCATCAGAGACATGGATGGATACTTAAATCACCTCTCTTTAGAATACGAGTCTGTGTGGGACACCAAGCCTGCCTGGCCTATTCTGAGATGATTGCTGAGCGACGGAAGAAAGTGAAA
AGTGGCCTGGAAGACACTTATGGAGTAAGAAAAGCTGAATGAGAACAATGTAAGCTCATTGAAAAGCATATTATATACATGTACAATTTGAAATTTGTAGTCATTGGTACAATATTTTTTTATCACTGAACTCTCAGTGGCTTTTTCTCTTTGTGAATCCAGAGCTTATATTATATGAGCATGTTGGATCTTACATCTTC
AAAAGGAAGCTACAGCTAAAGACTTGCCTAGACAAAGATGTCACCTAAAAAATATGAGATTTTTCCAAGTCCATTTGCAATTTAGATACTCTATCAATCATTTTGAAGTTCCGTAGACAACTTAATCTGAAAACCTTTCCCAAAGGGGCAGTTCTAATTGCTAAAATTTCAACAGCCAAAAGAAGTTTAGTCTTCCAATT
TATATGCAATTATTGCACCAAGAGTAGCGAGGTGCTTACGACTCAGTATGGGGGAGATGTTGCTGTGTTTGTCACGTTACGTAACATAGCATTCCCATGTCGGCT

>TRINITY_DN43366_c15_g1_i2 from sample A7 / Example unspliced isoform:

GTAAGAGTAGAGACATGGGGATTCTCGTTCAATCCCCTCGTTCCATTGCAGCAGTTACTCTAAACTCTGGCCCTCAAATTCCTCAATCAATACTTAAATCACTACCATATTCCTATTCACATTCATCACCACTATCTGCGTTTGCTATCTGCAATTGTACTCCAAAGATTAAATTACAGAGCAGAAGGATTCGATCCCGG
ACAACAACAATAAGGAGAGCCAGTGGAAATGGTGGAGGTCTGGACGATGACGAGGAGTCGAGATTTTTGGAGCAGGATGGAAGCATCAGAGACATGGATGGATACTTAAATCACCTCTCTTTAGAATACGAGTCTGTGTGGGACACCAAGCCTGCCTGgtgccagccatggacaatctgcctcacaggagttctagctac
tagtggcagctggattatcttccaatcactaacattgaccacaattgttgcatgtttgattggtgcttggtggtacatatttttatactcatatccacagGCCTATTCTGAGATGATTGCTGAGCGACGGAAGAAAGTGAAAAGTGGCCTGGAAGACACTTATGGAGTAAGAAAAGCTGAATGAGAACAATGTAAGCTCA
TTGAAAAGCATATTATATACATGTACAATTTGAAATTTGTAGTCATTGGTACAATATTTTTTTATCACTGAACTCTCAGTGGCTTTTTCTCTTTGTGAATCCAGAGCTTATATTATATGAGCATGTTGGATCTTACATCTTCAAAAGGAAGCTACAGCTAAAGACTTGCCTAGACAAAGATGTCACCTAAAAAATATGAG
ATTTTTCCAAGTCCATTTGCAATTTAGATACTCTATCAATCATTTTGAAGTTCCGTAGACAACTTAATCTGAAAACCTTTCCCAAAGGGGCAGTTCTAATTGCTAAAATTTCAACAGCCAAAAGAAGTTTAGTCTTCCAATTTATATGCAATTATTGCACCAAGAGTAGCGAGGTGCTTACGACTCAGTATGGGGGAGAT
GTTGCTGTGTTTGTCACGTTACGTAACATAGCATTCCCATGTCGGCT

Intron 2 GTAAGCTCAT ... GTGAATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.22	7	5.1	2
A2	66.23	3	7.8	4
A3	36.7	11	5.9	7
A4	-1	0	0	0
A5	25.92	1	0.8	0
A6	39	48	27.4	34
A7	49.23	33	34	30
A8	45.59	42	31.4	39
A9	44.14	35	21.3	34
A10	44.16	16	12.3	13

>TRINITY_DN107846_c0_g1_i1 from sample A1 / Example spliced isoform

GTGTTGGGTAAGAGTAGAGACATGGGGATTCTCGTTCAATCCCCTCGTTCCATTGCAGCAGTTACTCTAAACTCTGGCCCTCAAATTCCTCAATCAATACTTAAATCACTACCATATTCCTATTCACATTCATCACCACTATCTGCGTTTGCTATCTGCAATTGTACTCCAAAGATTAAATTACAGAGCAGAAGGATTCG
ATCCCGGACAACAACAATAAGGAGAGCCAGTGGAAATGGTGGAGGTCTGGACGATGACGAGGAGTCGAGATTTTTGGAGCAGGATGGAAGCATCAGAGACATGGATGGATACTTAAATCACCTCTCTTTAGAATACGAGTCTGTGTGGGACACCAAGCCTGCCTGGTGCCAGCCATGGACAATCTGCCTCACAGGAGTTC
TAGCTACTAGTGGCAGCTGGATTATCTTCCAATCACTAACATTGACCACAATTGTTGCATGTTTGATTGGTGCTTGGTGGTACATATTTTTATACTCATATCCACAGGCCTATTCTGAGATGATTGCTGAGCGACGGAAGAAAGTGAAAAGTGGCCTGGAAGACACTTATGGAGTAAGAAAAGCTGAATGAGAACAATAG
CTTATATTATATGAGCATGTTGGATCTTACATCTTCAAAAGGAAGCTACAGCTAAAGACTTGCCTAGACAAAGATGTCACCTAAAAAATATGAGATTTTTCCAAGTCCATTTGCAATTTAGATACTCTATCAATCATTTTGAAGTTCCGTAGACCACTTAATCTGAAAACTTTTCCCAAAGGGGCAGTTCTAATTGCTAA
AATTTCAACAGCC

>TRINITY_DN107846_c0_g1_i3 from sample A1 / Example unspliced isoform:

GTGTTGGGTAAGAGTAGAGACATGGGGATTCTCGTTCAATCCCCTCGTTCCATTGCAGCAGTTACTCTAAACTCTGGCCCTCAAATTCCTCAATCAATACTTAAATCACTACCATATTCCTATTCACATTCATCACCACTATCTGCGTTTGCTATCTGCAATTGTACTCCAAAGATTAAATTACAGAGCAGAAGGATTCG
ATCCCGGACAACAACAATAAGGAGAGCCAGTGGAAATGGTGGAGGTCTGGACGATGACGAGGAGTCGAGATTTTTGGAGCAGGATGGAAGCATCAGAGACATGGATGGATACTTAAATCACCTCTCTTTAGAATACGAGTCTGTGTGGGACACCAAGCCTGCCTGGTGCCAGCCATGGACAATCTGCCTCACAGGAGTTC
TAGCTACTAGTGGCAGCTGGATTATCTTCCAATCACTAACATTGACCACAATTGTTGCATGTTTGATTGGTGCTTGGTGGTACATATTTTTATACTCATATCCACAGGCCTATTCTGAGATGATTGCTGAGCGACGGAAGAAAGTGAAAAGTGGCCTGGAAGACACTTATGGAGTAAGAAAAGCTGAATGAGAACAATgt
aagctcattgaaaagcatattatatacatgtacaatttgaaatttgtagtcattggtacaatatttttttatcactgaactctcagtggctttttctctttgtgaatccagAGCTTATATTATATGAGCATGTTGGATCTTACATCTTCAAAAGGAAGCTACAGCTAAAGACTTGCCTAGACAAAGATGTCACCTAAAAA
ATATGAGATTTTTCCAAGTCCATTTGCAATTTAGATACTCTATCAATCATTTTGAAGTTCCGTAGACCACTTAATCTGAAAACTTTTCCCAAAGGGGCAGTTCTAATTGCTAAAATTTCAACAGCC