NA ----> NA
Intron 1 GTTAAGTGTA ... TCTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.72 | 24 | 29 | 3 |
| A2 | 57.78 | 19 | 26 | 0 |
| A3 | 27.5 | 29 | 11 | 0 |
| A4 | 19.23 | 21 | 5 | 0 |
| A5 | 50 | 8 | 8 | 1 |
| A6 | 54.04 | 91 | 107 | 3 |
| A7 | 52.61 | 122.5 | 136 | 9 |
| A8 | 59.41 | 194 | 284 | 6 |
| A9 | 57.47 | 132.5 | 179 | 5 |
| A10 | 55.07 | 124 | 152 | 0 |
>TRINITY_DN41777_c0_g1_i2 from sample A6 / Example spliced isoformCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGT
TGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATG
CGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAG
GAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCC
CGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAG
AAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGA
AATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTA
CAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGC
>TRINITY_DN41777_c0_g1_i4 from sample A6 / Example unspliced isoform:CATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGAATTAAATCGAGGATGCCATCTAGATTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAACCCAAAGCAGAAACGGAATCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTATATGTCATATGTTGCTGGCAGGAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGA
TGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGA
ATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTC
CAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAA
TCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGG
CAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTGGTTTTTTGCTCTCTCCAGCCCTCAATAGAACTTTACTAAT
ATGAATGAAATACTACCAATACCATTCATGGTTTAATCAGGTCTGAATTGGTTGGCTGATTGTGCAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGAAATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAgttaagtgtatttatggctattgtattcaggggtacaattttat
ccagggcattgtattcagggatacaacattttatccagggcagttcataaatcggcaaatttaaatctgtcaatctggaatttccctccctgcagtggtggtactaaatataagattccttgcaagatctagcaatccaccttatgacacaggtttttaaatggaaggctaaaaagaaaaaccgtagaaccctaacccaa
ttaagtggggaaagagtacagccatgaaccaattaagtgggcaaaaataagaaccctatcccaattaaatgtgggtgtttatctatgagcaaaaactttaaataattgtagtttattaacccaaaaaaagagagtacaagctgtattttaaaaacgatgattatcaaggtgtttctgggataaacgataagattcgttta
catttcattatacatttatttgattaagttgatgacaggttcaatgtcttatagaaaatcgtttatgtgaaatttataatgttaattagtattatcatttggtatgattacttgcataatttgggggttttcatattaacaaagagcacctaatataaaaatgaatacaagctcatacaagctcaaacatacaataattt
tgggtgatcatgctgataccaaataaaattttcagatttttcaatttaattgtaattttttctttgattcttcattaaaatctgaatcggtaatgttttttttcattttcaataaaatctgaatgatttgtttcaacaccagagaacaatattgggctgttggaagaaaaagataaccagttgttgggattttttttgaa
attcctgtgttttttaagttgtgctcgtttgcagtaaaatgtgcttgttattttttttaatatagaacggcttataaaagttattgttgggactttgtataaagttcatggcattaagaaaagtaattgggttttcaaatatgttcagtttatagggctattatttgatctaatgattaagaatatatgtgacttccttg
aggttttaaattcaaatccctcagaaagtatgataaaatatttatataactattttaaaatcaagtttttctagtagtaatagcaatgatacatttcagcgttttctttggcagGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACA
Intron 2 GTTAAGTGTA ... TCTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.26 | 23.4 | 33 | 8.7 |
| A2 | 59.8 | 18.9 | 28.2 | 2.8 |
| A3 | 35.71 | 27.7 | 15.8 | 4.7 |
| A4 | 19.32 | 20.9 | 5 | 6.6 |
| A5 | 54.75 | 7.7 | 9.3 | 1.9 |
| A6 | 57.34 | 88.2 | 119 | 20.9 |
| A7 | 56.33 | 117.9 | 152.4 | 38.3 |
| A8 | 62.56 | 186 | 310.8 | 34.3 |
| A9 | 61.43 | 125.7 | 199.9 | 41.8 |
| A10 | 58.28 | 119.6 | 167.2 | 17.9 |
>TRINITY_DN41777_c0_g1_i2 from sample A6 / Example spliced isoformCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGT
TGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATG
CGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAG
GAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCC
CGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAG
AAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGA
AATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTA
CAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGC
>TRINITY_DN41777_c0_g1_i3 from sample A6 / Example unspliced isoform:CATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGT
TGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATG
CGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAG
GAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCC
CGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAG
AAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTGGTTTTTTGCTCTCTCCAGCCCTCAATAGAACTTTACTAATATG
AATGAAATACTACCAATACCATTCATGGTTTAATCAGGTCTGAATTGGTTGGCTGATTGTGCAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGAAATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAgttaagtgtatttatggctattgtattcaggggtacaattttatcca
gggcattgtattcagggatacaacattttatccagggcagttcataaatcggcaaatttaaatctgtcaatctggaatttccctccctgcagtggtggtactaaatataagattccttgcaagatctagcaatccaccttatgacacaggtttttaaatggaaggctaaaaagaaaaaccgtagaaccctaacccaatta
agtggggaaagagtacagccatgaaccaattaagtgggcaaaaataagaaccctatcccaattaaatgtgggtgtttatctatgagcaaaaactttaaataattgtagtttattaacccaaaaaagagagtacaagctgtattttaaaaacgatgattatcaaggtgtttctgggataaacgataagattcgtttacatt
tcattatacatttatttgattaagttgatgacaggttcaatgtcttatagaaaatcgtttatgtgaaatttataatgttaattagtattatcatttggtatgattacttgcataatttgggggttttcatattaacaaagagcacctaatataaaaatgaatacaagctcatacaagctcaaacatacaataattttggg
tgatcatgctgataccaaataaaattttcagatttttcaatttaattgtaattttttctttgattcttcattaaaatctgaatcggtaatgttttttttcattttcaataaaatctgaatgatttgtttcaacaccagagaacaatattgggctgttggaagaaaaagataaccagttgttgggattttttttgaaattc
ctgtgttttttaagttgtgctcgtttgcagtaaaatgtgcttgttattttttttaatatagaacggcttataaaagttattgttgggactttgtataaagttcatggcattaagaaaagtaattgggttttcaaatatgttcagtttatagggctattatttgatctaatgattaagaatatatgtgacttccttgaggt
tttaaattcaaatccctcagaaagtatgataaaatatttatataactattttaaaatcaagtttttctagtagtaatagcaatgatacatttcagcgttttctttggcagGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTAT
TTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGCCTTCTTACAGCCTGTCCTCCAAGATTGAATATA
GGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAGCAA
Intron 3 GTTGGTTTTT ... GATTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.87 | 42.6 | 28 | 26.1 |
| A2 | 27.04 | 23.9 | 10 | 7.7 |
| A3 | 21.71 | 43.8 | 12 | 12.3 |
| A4 | 33.47 | 14 | 9 | 5.1 |
| A5 | 25.87 | 9 | 4 | 2.3 |
| A6 | 25.07 | 99.3 | 35 | 31.5 |
| A7 | 27.94 | 164.6 | 55 | 72.7 |
| A8 | 26.42 | 311.8 | 116 | 108.1 |
| A9 | 32.09 | 179.8 | 87 | 83 |
| A10 | 25.22 | 161.5 | 54 | 55 |
>TRINITY_DN124893_c0_g1_i4 from sample A1 / Example spliced isoformTGGGCGATGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAA
TGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACAT
GCAGTCTTCCATTAGATGAAATGGGCAATAGCCCAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGCAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGA
TACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACC
AGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTC
TTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTATTAAT
CTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTAC
TTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGG
TCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGC
AGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAA
TCGATGAAATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTAAGTGTATTTATGGCTATTGTATTCAGGGGTACAATTTTATCCAGGGCATTGTATTCAGGGATACAACATTTTATCCAGGGCAGTTCATAAATCGGCAAATTTAAATCTGTCAATCTGGAATTTCCCTCCCTGCAGTGGTGGTACTAA
ATATAAGATTCCTTGCAAGATCTAGCAATCCACCTTATGACACAGGTTTTTAAATGGAAGGCTAAAAAGAAAAACCGTAGAACCCTAACCCAATTAAGTGGGGAAAGAGTACAGCCATGAACCAATTAAGTGGGCAAAAATAAGAACCCTATCCCAATTAAATGTGGGTGTTTATCTATGAGCAAAAACTTTAAATAATT
GTAGTTTATTAACCCAAAAAAGAGAGTACAAGCTGTATTTAAAAAACGATGATTATCATGGTGTTTCTGGGATAAATGATAAGATTCGTTTACATTTTATTAT
>TRINITY_DN124893_c0_g1_i7 from sample A1 / Example unspliced isoform:TGGGCGATGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAA
TGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACAT
GCAGTCTTCCATTAGATGAAATGGGCAATAGCCCAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGCAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGA
TACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACC
AGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTC
TTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTATTAAT
CTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTAC
TTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGG
TCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGC
AGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGgttggttttttgctctctccagccctcaatagaactttac
taatatgaatgaaatactaccaataccattcatggtttaatcaggtctgaattggttggctgattgtgcagTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGAAATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTAAGTGTATTTATGGCTATTGTATTCAGGGGTACAATT
TTATCCAGGGCATTGTATTCAGGGATACAACATTTTATCCAGGGCAGTTCATAAATCGGCAAATTTAAATCTGTCAATCTGGAATTTCCCTCCCTGCAGTGGTGGTACTAAATATAAGATTCCTTGCAAGATCTAGCAATCCACCTTATGTCACAGGTCTTTAAATGGAAGGCTAAAAAGAAAAACCGTAGAACCCTAAC
CCAATTAAGTGGGGAAAGAGTACAGCCATGAACCAATTAAGTGGGCAAAAATAAGAACCCTATCCCAATTAAATGTGGGTGTTTATCTATGAGCAAAAACTTTAAATAATTGTAGTTTATTAACCCAAAAAAGAGAGTACAAGCTGTATTTAAAAAACGATGATTATCATGGTGTTTCTGGGATAAATGATAAGATTCGT
TTACATTTTATTAT
Intron 4 GTTGGTTTTT ... TCTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.37 | 31 | 28 | 9 |
| A2 | 48.15 | 7 | 10 | 3 |
| A3 | 32.08 | 18 | 12 | 5 |
| A4 | 42.11 | 11 | 9 | 7 |
| A5 | 27.27 | 8 | 4 | 2 |
| A6 | 35.4 | 52 | 35 | 22 |
| A7 | 36.68 | 82 | 55 | 40 |
| A8 | 37.81 | 125 | 116 | 36 |
| A9 | 44.71 | 81 | 87 | 44 |
| A10 | 34.6 | 69 | 54 | 19 |
>TRINITY_DN41777_c0_g1_i6 from sample A6 / Example spliced isoformCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGT
TGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATG
CGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAG
GAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCC
CGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAG
AAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGT
TCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCA
GGTTCAGCGC
>TRINITY_DN41777_c0_g1_i3 from sample A6 / Example unspliced isoform:CATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGT
TGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATG
CGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAG
GAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCC
CGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAG
AAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGgttggttttttgctctctccagccctcaatagaactttactaatatg
aatgaaatactaccaataccattcatggtttaatcaggtctgaattggttggctgattgtgcagtgctcaatagcatttgcgagcccacaatgtggagaaagaatcgatgaaattgaaaacgggttatgaatgtagttctgactcaattatcagttaagtgtatttatggctattgtattcaggggtacaattttatcca
gggcattgtattcagggatacaacattttatccagggcagttcataaatcggcaaatttaaatctgtcaatctggaatttccctccctgcagtggtggtactaaatataagattccttgcaagatctagcaatccaccttatgacacaggtttttaaatggaaggctaaaaagaaaaaccgtagaaccctaacccaatta
agtggggaaagagtacagccatgaaccaattaagtgggcaaaaataagaaccctatcccaattaaatgtgggtgtttatctatgagcaaaaactttaaataattgtagtttattaacccaaaaaagagagtacaagctgtattttaaaaacgatgattatcaaggtgtttctgggataaacgataagattcgtttacatt
tcattatacatttatttgattaagttgatgacaggttcaatgtcttatagaaaatcgtttatgtgaaatttataatgttaattagtattatcatttggtatgattacttgcataatttgggggttttcatattaacaaagagcacctaatataaaaatgaatacaagctcatacaagctcaaacatacaataattttggg
tgatcatgctgataccaaataaaattttcagatttttcaatttaattgtaattttttctttgattcttcattaaaatctgaatcggtaatgttttttttcattttcaataaaatctgaatgatttgtttcaacaccagagaacaatattgggctgttggaagaaaaagataaccagttgttgggattttttttgaaattc
ctgtgttttttaagttgtgctcgtttgcagtaaaatgtgcttgttattttttttaatatagaacggcttataaaagttattgttgggactttgtataaagttcatggcattaagaaaagtaattgggttttcaaatatgttcagtttatagggctattatttgatctaatgattaagaatatatgtgacttccttgaggt
tttaaattcaaatccctcagaaagtatgataaaatatttatataactattttaaaatcaagtttttctagtagtaatagcaatgatacatttcagcgttttctttggcagGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTAT
TTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGCCTTCTTACAGCCTGTCCTCCAAGATTGAATATA
GGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAGCAA
Intron 5 GTTGGTTTTT ... TCTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.46 | 31 | 28 | 3 |
| A2 | 58.82 | 7 | 10 | 0 |
| A3 | 40 | 18 | 12 | 0 |
| A4 | 45 | 11 | 9 | 0 |
| A5 | 33.33 | 8 | 4 | 1 |
| A6 | 40.23 | 52 | 35 | 3 |
| A7 | 40.15 | 82 | 55 | 9 |
| A8 | 48.13 | 125 | 116 | 6 |
| A9 | 51.79 | 81 | 87 | 5 |
| A10 | 43.9 | 69 | 54 | 0 |
>TRINITY_DN41777_c0_g1_i6 from sample A6 / Example spliced isoformCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGT
TGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATG
CGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAG
GAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCC
CGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAG
AAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGT
TCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCA
GGTTCAGCGC
>TRINITY_DN41777_c0_g1_i4 from sample A6 / Example unspliced isoform:CATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCT
TCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATA
TTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGAATTAAATCGAGGATGCCATCTAGATTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGA
GTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAACCCAAAGCAGAAACGGAATCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTATATGTCATATGTTGCTGGCAGGAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGA
TGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGA
ATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTC
CAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAA
TCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGG
CAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGgttggttttttgctctctccagccctcaatagaactttactaat
atgaatgaaatactaccaataccattcatggtttaatcaggtctgaattggttggctgattgtgcagtgctcaatagcatttgcgagcccacaatgtggagaaagaatcgatgaaattgaaaacgggttatgaatgtagttctgactcaattatcagttaagtgtatttatggctattgtattcaggggtacaattttat
ccagggcattgtattcagggatacaacattttatccagggcagttcataaatcggcaaatttaaatctgtcaatctggaatttccctccctgcagtggtggtactaaatataagattccttgcaagatctagcaatccaccttatgacacaggtttttaaatggaaggctaaaaagaaaaaccgtagaaccctaacccaa
ttaagtggggaaagagtacagccatgaaccaattaagtgggcaaaaataagaaccctatcccaattaaatgtgggtgtttatctatgagcaaaaactttaaataattgtagtttattaacccaaaaaaagagagtacaagctgtattttaaaaacgatgattatcaaggtgtttctgggataaacgataagattcgttta
catttcattatacatttatttgattaagttgatgacaggttcaatgtcttatagaaaatcgtttatgtgaaatttataatgttaattagtattatcatttggtatgattacttgcataatttgggggttttcatattaacaaagagcacctaatataaaaatgaatacaagctcatacaagctcaaacatacaataattt
tgggtgatcatgctgataccaaataaaattttcagatttttcaatttaattgtaattttttctttgattcttcattaaaatctgaatcggtaatgttttttttcattttcaataaaatctgaatgatttgtttcaacaccagagaacaatattgggctgttggaagaaaaagataaccagttgttgggattttttttgaa
attcctgtgttttttaagttgtgctcgtttgcagtaaaatgtgcttgttattttttttaatatagaacggcttataaaagttattgttgggactttgtataaagttcatggcattaagaaaagtaattgggttttcaaatatgttcagtttatagggctattatttgatctaatgattaagaatatatgtgacttccttg
aggttttaaattcaaatccctcagaaagtatgataaaatatttatataactattttaaaatcaagtttttctagtagtaatagcaatgatacatttcagcgttttctttggcagGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACA
Intron 6 GTTAGACCCA ... GATTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.89 | 44 | 58 | 26 |
| A2 | 48.86 | 24.7 | 39 | 8 |
| A3 | 39.96 | 44.3 | 46 | 13 |
| A4 | 56.2 | 13.7 | 30 | 5 |
| A5 | 46.55 | 8.7 | 14 | 1 |
| A6 | 20.85 | 100.7 | 20 | 33 |
| A7 | 27.84 | 166 | 52 | 76 |
| A8 | 22.96 | 317.7 | 72 | 117 |
| A9 | 27.55 | 183 | 51 | 88 |
| A10 | 27.86 | 164.7 | 67 | 60 |
>TRINITY_DN49067_c0_g1_i11 from sample A7 / Example spliced isoformGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAATGAAGATC
ATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCTT
CCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATGGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATAT
TGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGAG
TGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCACACAGGAAAGTTTCTTGATGTT
GAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATGC
GAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAGG
AGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCCC
GAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAGA
AAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGTGCTCAATAGCATTTGCGGGCCCACAATGTGGAGAAAGAATCGATGAA
ATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTAC
AGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGCTTCTTACAGCCTGTCCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGT
AATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAG
>TRINITY_DN49067_c0_g1_i9 from sample A7 / Example unspliced isoform:CAGAAACTGGGCATACTCATTCACTGACAACCTGGACTTAATTTCATCACGATATTAAGGAATCATTGGCAGGGTAGAATATGTCCAGTTTTATGAGCAATGTTGTTTGATGATGGAAAGCCAGTGGAGGAGGAGGTTTGCCTGCAGACTGAAGTGAGACCCATTCCACCCCACATTCAAACTGGTTGCGGGCACAGAAG
AGAAGCTTTGGATGGTCTACTTCCCTGACACTTGCACTGTCAAGGCATATCCCCACTCAGACTTACGCCCACCTCAACAATGGCTCGAGGAAACTGGATCTTGGCGCCTCAGATTGCGGGGACGGAAGAGAACCTTTGGATGGTCTACTTCCCTGACACTTGCACTCTCAAGGCATATCCCCACTCAGACTTACGCCCAC
CTCAACAATGGCTCGAGGAAACTGGATCTTGGCGCCTCAGTTTCTGTTCTGATACCCATTTACCTGGGCGTAATAATTCATAGACGATTTCGTAATCATCGTTGGGCGTAATAATTCATAGAGGATTTCGTAATCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTT
CTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAATGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGA
TGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCTTCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATGGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCA
GCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATG
CAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCA
GGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCACACAGGAAAGTTTCTTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTT
CCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCC
TTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAA
CGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGG
CTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAG
GAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGgttagacccattccaccccacattcaaactggttgcgggaacggaagagaagctttggatggtctacttcgctgacacttgcactctcaaggcatatccccactcagacttacgcccaggttttttgctctctccagccctcaa
tagaactttactaatatgaatgaaatactaccaataccattcatggtttaatcaggtctgaattggttggctgattgtgcagTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGAAATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTAAGTGTATTTATGGCTATTGTATTCA
GGGGTACAATTTTATCCAGGGCATTGTATTCAGGGATACAACATTTTATCCAGGGCAGTTCATAAATCGGCAAATTTAAATCTGTCAATCTGGAATTTCCCTCCCTGCAGTGGTGGTACTAAATATAAGATTCCTTGCAAGATCTAGCAATCCACCTTATGTCACAGGTCTTTAAATGGAAGGCTAAAAAGAAAAACTGT
AGAACCCTAACCCAATTAAGTGGGGAAAGAGTACAGCCATGAACCAATTAAGTGGGCAAAAATAAGAACCCTATCCCAATTAAATGTGGGTGTTTATCTATGAGCAAAAACTTTAAATAATTGTAGTTTATTAACCCAAAAAAGAGAGTACAAGCTGTATTTAAAAAACGATGATTATCATGGTGTTTCTGGGATAAATG
ATAAGATTCGTTTACATTTTATTATACATTTATTTGATTAAGTTGATGACAGGTTCAATGTCTTATAGAAAATCGTTTATGTGAAATTTATAATGTTAATTAGTATTATCATTTGGTATGATTACTTGCATAATTTGGGGGTTTTCATATTAACAAAGAGCACCTAATATAAAAATGAATACAAGCTCATACAAGCTCAA
ACATACAATAATTTTGGGTGATCATGCTGATACCAAATAAAATTTTCAGATTTTTCAATTTAATTGTAATTTTTTCTTTGATTCTTGATTAAAATCTGAATCGGTAATGTTTTTTTTCATTTTCAATAAAATCTGAATGATTTGTTTCAACACCAGGGAACAATATTCGGCTGTTGGAAGAAAAAGATAACCAGTTGTTG
GGATTTTTTTTGAAATTCCTGTGTTTTTTAAGTTGTGCTCGTTTGCAGTAAAATGTGCTTGTTATTTTTTTTTATATAGAACGGCTTATAAAAATTATTGTTGGGACTTTGTATAAAGTTCATGGCATTAAGAAAAGTAATTGGGTTTTCAAATATGTTCAGTTTATAGGGCTATTATTTGATCTAATGATTAAGAATAT
ATGTGACTTCCTTGAGGTTTTAAATTCAAATCCCTCAGAAAGTATGATAAAATATTTATATAACTATTTTAAAATCAAGTTTTTCTAGTAGTAATAGCAATGATACATTTCAGCGTTTTCTTTGGCAGGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCA
ATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGCCTTCTTACAGCCTGT
CCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAG
Intron 7 GTTAGACCCA ... TCTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.94 | 31 | 58 | 9 |
| A2 | 75 | 7 | 39 | 3 |
| A3 | 58.62 | 18 | 46 | 5 |
| A4 | 62.71 | 11 | 30 | 7 |
| A5 | 50 | 8 | 14 | 2 |
| A6 | 28.77 | 52 | 20 | 22 |
| A7 | 35.94 | 82 | 52 | 40 |
| A8 | 30.17 | 125 | 72 | 36 |
| A9 | 36.96 | 81 | 51 | 44 |
| A10 | 38.39 | 69 | 67 | 19 |
>TRINITY_DN49067_c0_g1_i7 from sample A7 / Example spliced isoformGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAATGAAGATC
ATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCTT
CCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATGGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATAT
TGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGAG
TGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCACACAGGAAAGTTTCTTGATGTT
GAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATGC
GAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAGG
AGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCCC
GAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAGA
AAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTT
CTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAG
GTTCAGCGCTTCTTACAGCCTGTCCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAG
>TRINITY_DN49067_c0_g1_i9 from sample A7 / Example unspliced isoform:CAGAAACTGGGCATACTCATTCACTGACAACCTGGACTTAATTTCATCACGATATTAAGGAATCATTGGCAGGGTAGAATATGTCCAGTTTTATGAGCAATGTTGTTTGATGATGGAAAGCCAGTGGAGGAGGAGGTTTGCCTGCAGACTGAAGTGAGACCCATTCCACCCCACATTCAAACTGGTTGCGGGCACAGAAG
AGAAGCTTTGGATGGTCTACTTCCCTGACACTTGCACTGTCAAGGCATATCCCCACTCAGACTTACGCCCACCTCAACAATGGCTCGAGGAAACTGGATCTTGGCGCCTCAGATTGCGGGGACGGAAGAGAACCTTTGGATGGTCTACTTCCCTGACACTTGCACTCTCAAGGCATATCCCCACTCAGACTTACGCCCAC
CTCAACAATGGCTCGAGGAAACTGGATCTTGGCGCCTCAGTTTCTGTTCTGATACCCATTTACCTGGGCGTAATAATTCATAGACGATTTCGTAATCATCGTTGGGCGTAATAATTCATAGAGGATTTCGTAATCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTT
CTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAATGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGA
TGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCTTCCATTAGATGAAATGGGCAATAGCCTAGTGCAGACAGATCCTGGTTTCTATGGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCA
GCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATG
CAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCA
GGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCACACAGGAAAGTTTCTTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTT
CCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCC
TTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAA
CGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGG
CTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAG
GAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGgttagacccattccaccccacattcaaactggttgcgggaacggaagagaagctttggatggtctacttcgctgacacttgcactctcaaggcatatccccactcagacttacgcccaggttttttgctctctccagccctcaa
tagaactttactaatatgaatgaaatactaccaataccattcatggtttaatcaggtctgaattggttggctgattgtgcagtgctcaatagcatttgcgagcccacaatgtggagaaagaatcgatgaaattgaaaacgggttatgaatgtagttctgactcaattatcagttaagtgtatttatggctattgtattca
ggggtacaattttatccagggcattgtattcagggatacaacattttatccagggcagttcataaatcggcaaatttaaatctgtcaatctggaatttccctccctgcagtggtggtactaaatataagattccttgcaagatctagcaatccaccttatgtcacaggtctttaaatggaaggctaaaaagaaaaactgt
agaaccctaacccaattaagtggggaaagagtacagccatgaaccaattaagtgggcaaaaataagaaccctatcccaattaaatgtgggtgtttatctatgagcaaaaactttaaataattgtagtttattaacccaaaaaagagagtacaagctgtatttaaaaaacgatgattatcatggtgtttctgggataaatg
ataagattcgtttacattttattatacatttatttgattaagttgatgacaggttcaatgtcttatagaaaatcgtttatgtgaaatttataatgttaattagtattatcatttggtatgattacttgcataatttgggggttttcatattaacaaagagcacctaatataaaaatgaatacaagctcatacaagctcaa
acatacaataattttgggtgatcatgctgataccaaataaaattttcagatttttcaatttaattgtaattttttctttgattcttgattaaaatctgaatcggtaatgttttttttcattttcaataaaatctgaatgatttgtttcaacaccagggaacaatattcggctgttggaagaaaaagataaccagttgttg
ggattttttttgaaattcctgtgttttttaagttgtgctcgtttgcagtaaaatgtgcttgttatttttttttatatagaacggcttataaaaattattgttgggactttgtataaagttcatggcattaagaaaagtaattgggttttcaaatatgttcagtttatagggctattatttgatctaatgattaagaatat
atgtgacttccttgaggttttaaattcaaatccctcagaaagtatgataaaatatttatataactattttaaaatcaagtttttctagtagtaatagcaatgatacatttcagcgttttctttggcagGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCA
ATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGCCTTCTTACAGCCTGT
CCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAG
Intron 8 GCAGTTATTT ... CTTCTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.47 | 10 | 10 | 31.5 |
| A2 | 92.59 | 1 | 13 | 12 |
| A3 | 92 | 1 | 13 | 10 |
| A4 | 100 | 0 | 5 | 5 |
| A5 | 100 | 0 | 12 | 3 |
| A6 | 74.32 | 19 | 56 | 54 |
| A7 | 80.53 | 20 | 87.5 | 78 |
| A8 | 85.23 | 21 | 124.5 | 118 |
| A9 | 80.28 | 18 | 74.5 | 72 |
| A10 | 71.32 | 19 | 49.5 | 45 |
>TRINITY_DN124893_c0_g1_i5 from sample A1 / Example spliced isoformTGGGCGATGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAA
TGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACAT
GCAGTCTTCCATTAGATGAAATGGGCAATAGCCCAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGCAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGA
TACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACC
AGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTC
TTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTATTAAT
CTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTAC
TTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGG
TCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGC
AGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAAC
AGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTCAGCGCCTTCTTACAGCCTGTCCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAA
AAAGTTACACTTGGTTTAAAGCAAATGTGGGAAG
>TRINITY_DN124893_c0_g1_i6 from sample A1 / Example unspliced isoform:TGGGCGATGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAA
TGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACAT
GCAGTCTTCCATTAGATGAAATGGGCAATAGCCCAGTGCAGACAGATCCTGGTTTCTATAGTCAATTTACTAGAATAGAGAAGCCTAGCAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGA
TACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACC
AGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTC
TTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTATTAAT
CTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTAC
TTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGG
TCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGC
AGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAAC
AGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTACAGgcagttatttatgaatatgaatacaggctgttttcatttgataagaaactcaaactcgttttgatggatcagtctctga
aattgcaggttcagcgcttcttacagCCTGTCCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGTAATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAGCAAATGTGGGAAG
Intron 9 GTCAGGACAT ... TGAATCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.81 | 21 | 9 | 8 |
| A2 | 25.49 | 19 | 3 | 10 |
| A3 | 45.24 | 23 | 11 | 27 |
| A4 | 7.69 | 12 | 0 | 2 |
| A5 | 37.5 | 10 | 7 | 5 |
| A6 | 5.88 | 8 | 0 | 1 |
| A7 | 25.27 | 34 | 5 | 18 |
| A8 | 23.81 | 16 | 1 | 9 |
| A9 | 23.23 | 38 | 11 | 12 |
| A10 | 26.11 | 58 | 27 | 14 |
>TRINITY_DN115484_c4_g3_i7 from sample A3 / Example spliced isoformGAGGACTGCACATTTGAACCTCATTTGTTATTGTGAATTTAGGAGATTTGGTCCCTAACTAGGTTCACCGACATCAAGCTATGAAGAATGGATACCAAGTACTCTGGCGCATAGATTAATGTACGGATTTAACTTGATGGAACACCGTCGGCGGCGACATTGATGCATACCTATGATCCTCGTATGACGTGACCTGACCG
CCATGAATAACTTCGACACCAAGTTATGTACTGCAATGGCCCTGGATGTCAGCGATTCTATATATACAGTACATCTACATTCGGACTTCTTGACAGCAAGCGCGTCAATCCCTTCGAATGCTTTAGGACACATTCATCAGGCTCAGTGGACTGTGGGAGCCTCGCATCATCCATCATGATCATTACTTTGAAGTGAGATC
AATCTCCTCGAAGGTGTTTTTCCATTCCATTCTCATATCCTCGGTACCATTGCACAGGAGTTGAGACTCGGAAGAATATGGAGTTAAGAGCAGCAGGAAAAGCAACAGTATGGTGGGATATGGAGAGCTGCCCCTTGCCTCCTTCATTCCACCCTTACATCGTCACTTCCATGGGCCCCGCTTTACTCCACAAATTCAAC
ATCATGGATGTTAATACAGGACGCGATGGTTGCAGATCGCTTAATGACTTTCACTTCTCTGCTTATGAATTCTTCTCTCCGGTTGACACGGAGCTTTATCAAACAATCTTTAACTCTGGAATCCGACTGCACCAACTCCCTCCAGGCAATAGAAATGAAATGGAGAAAATGATGATCGCGGATGTTCTTCTGTGGGCGAT
GGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAGTGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAATGAAGATC
ATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGCCATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCTT
CCATTAGATGAAATGGGCAATAGCCCAGTGCAGACAGATCCTGGTTTCTATGGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGATAAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATAT
TGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAAGGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGAG
TGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGTTGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGTT
GAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGATCCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATGC
GAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGAATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAGG
AGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAGCAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCCC
GAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCACCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAGA
AAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTCTCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGAA
ATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTTCTTTTTTGAATGAATACAGAAATTCTCACCTCAAACAGGCAGTTCTCAATTCTTACAGGCAGTTCTCAATTCTTACAGGCAGTTATTTTTTAAAGATCCCCGCTATCTTTTTGTTGGACAAATATTACGGAATTGCAAGTTCAGCGCCTTCTTAC
AGGCAGTTATTTATGAATATGAATACAGGCTGTTTTCATTTGATAAGAAACTCAAACTCGTTTTGATGGATCAGTCTCTGAAATTGCAGGTTCAGCGCTTCTTACAGCCTGTCCTCCAAGATTGAATATAGGCAGTTTTCATTGTATATCAAACTTCTTGGATAAGTCTCTGAAATGCTGCTCAAGCATCTTTTATTTGT
AATTTTGCTCTACTATGAATAAAATTACGATTTATAAAAAAAAAAAGTTACACTTGGTTTAAAGCAAATGTGGGAAGACAATGTGTTGCATTGTACTAATATTTTTGTAATTTTTTTTATTGGTTTTCATTATTAAATTAGCAGAA
>TRINITY_DN115484_c4_g3_i1 from sample A3 / Example unspliced isoform:GAGGACTGCACATTTGAACCTCATTTGTTATTGTGAATTTAGGAGATTTGGTCCCTAACTAGGTTCACCGACATCAAGCTATGAAGAATGGATACCAAGTACTCTGGCGCATAGATTAATGTACGGATTTAACTTGATGGAACACCGTCGGCGGCGACATTGATGCATACCTATGATCCTCGTATGACGTGACCTGACCG
CCATGAATAACTTCGACACCAAGTTATGTACTGCAATGGCCCTGGATGTCAGCGATTCTATATATACAGTACATCTACATTCGGACTTCTTGACAGCAAGCGCGTCAATCCCTTCGAATGCTTTAGGACACATTCATCAGGCTCAGTGGACTGTGGGAGCCTCGCATCATCCATCATGATCATTACTTTGAAGTGAGATC
AATCTCCTCGAAGGTGTTTTTCCATTCCATTCTCATATCCTCGGTACCATTGCACAGGAGTTGAGACTCGGAAGAATATGGAGTTAAGAGCAGCAGGAAAAGCAACAGTATGGTGGGATATGGAGAGCTGCCCCTTGCCTCCTTCATTCCACCCTTACATCGTCACTTCCATGGGCCCCGCTTTACTCCACAAATTCAAC
ATCATGGATGTTAATACAGGACGCGATGGTTGCAGATCGCTTAATGACTTTCACTTCTCTGCTTATGAATTCTTCTCTCCGGTTGACACGGAGCTTTATCAAACAATCTTTAACTCTGGAATCCGACTGCACCAACTCCCTCCAGgtcaggacattcattgccctagcttttcttactctctttaactaaccctacagtc
cataattgaaattttcaaatttgtgttaaattcatctggaaacagttccctgcccctgctatctttttcagttgcaagtagttcttcagcaaatggcattcgtctcgcttgatttagatcgtctttgcccttattttcgtgggatttctttgggtgttgatttgaaccttttcttgattttttcggtgtggtattcgtca
tgagattgccctgtgttatgaatcacagGCAATAGAAATGAAATGGAGAAAATGATGATCGCGGATGTTCTTCTGTGGGCGATGGACACGCCACCACCGGCAGATATTATCTTCATCGTTGGTAGCGTGGATTTCTGTCACTTGTTTCAGAAGCTCCGGCAGAGATCATATAATGTCTTCTTGGTCTGCCAGTCTGTGAG
TGAAATGACTCAAGACATGTTGGGTGGGGTTAACGATTGTCTTGAATGGTTATCTTTTCTCAGGTCATTGCAGAATGAAGATCATCAGTCACACTTTCCTAGAGGGATTAGTGTATATGACCATACTTTCTCTAATACTGCTTTCCCTACTTCTTCAAGCAATATTCACAAAAGAGAGATGGAAGAATCAAATAAGAAGC
CATCCGGTTTCAAGTACAGTCGAGAATTTTTATTCAGCCTCAGACTTTCCCTCAGTGGTGGATGGAATACTACATGCAGTCTTCCATTAGATGAAATGGGCAATAGCCCAGTGCAGACAGATCCTGGTTTCTATGGTCAATTTACTAGAATAGAGAAGCCTAGGAGCCCTGTAACTTCAGCATCGTCTACAGAGAAAGAT
AAATCAGCTTCGTTGGAGGAATTCAAAGCATGGCTGACCCAAGTTGTGAACGGCAAGAAACATGCAGAAAATGGATACTATATTGGGACCATTCATAGGGACTTCTGGAAAGCAACGGGAAAGATTCTGGATGAGAAGTTGCTGGGATTTTCAGATATCAGAAATCTTGTAGAGGAATGCAAGGATATTGCTGCACTCAA
GGATGTAAATCGAGGATGCCATCTAGCTTTTACTGTTAAGCCGAAGGAACAGAACAAGAACCCCATGTTTTCACCAGGTGGAGTGAATCCGAATCCGAGGAAAAAAGTCAAATCTAAAGAGAAATCCAAAGCAGAAACAGACTCAACACGGAAACCAAAAGCTTCGGCAGAAGACTTCAGGGAATTTGTATGTCATATGT
TGCTGGCAGAATTCTCGCAGGGATTCCTGATGTCCCGTCTGCCTCAGAGATTTGAACAGCATACAGGAAAGTTTCTTGATGTTGAGCATCTTGGATACAAAAAAATGTCCGCATTTGTTGCATCATTCGGTCACCTTGTGTCAGTGTGTGCTACTGGCCCTGGACCCGTTCGAATATTTCCCTCAGGGTTTATCAACGAT
CCGGTGCCCAATCTCTATCCCAATTCCAATACAATCAAAGAAAACCCCATTAACTCGAACCGTGCTCCTCTTAATCTGAATGCGAAGGTAGAAGCGAACCGCCCTTCAAGTGGTGGAAGTGGCAAGGAATTGTTGAAAAACAGGACAGCGGAGGAAAATAACTTTAACGAACAATTGCCTTACATCAACTCTGAATACGA
ATCGCTACCATCTATGATTAGTGCCTCACGGGCATCAATGAATTGTAGCCCTTGTACAGAAGAAAATAGCCCTACTTTCCAGGAGTATAATAGCATCATGTCAGATTCTTCAAGCACTCGTAGAGGATCGCAAGTTAGGGAAAGGGAGGGCCAATCTTCTAATACAATCTTTGACACAACGTCCTTCCATAAGGAATTAG
CAGAATCCGATTTTCTCAAGGAACATTTCTCCACTTCTCTTTGGGAGAGCAATAACCCCATTGAAGAAGTCTCGGTCAATCCCGAAAACCTAATGGCAGAAACAATGCAAAACATGAGTCTAATGAAGGAAACCACAAGCTTTTGTGGAGAGCCCAGTATTCATGGTGACAAACCAGGGCTACCAGATTTGATTCCTCCA
CCGTCTCAGTCTCCAGGCTCAGAACTACAAGCAGATTATAACAGTTCTCTTGCTGATCCACTTCAGACCAGAAGCAGGGCAGAAAGTAGTGCTTTTTGTACAGTAGACTTGAAGCATGACATAAGATTGGATTGCAAACAAAATGAGCAAAGTACAAACAGTGCAGGGTATGAAGAGAGGAGTGTGACTAGTGCTGTTTC
TCCAGCGGAATCAATCATTCAAATCGCTGCAAGAGTGCTCAATAGCATTTGCGAGCCCACAATGTGGAGAAAGAATCGATGAAATTGAAAACGGGTTATGAATGTAGTTCTGACTCAATTATCAGTTAAGTGTATTTATGGCTATTGTATTCAGGGGTACAATTTTATCCAGGGCATTGTATTCAGGGATACAACATTTT
ATCCAGGGCAGTTCATAAATCGGCAAATTTAAATCTGTCAATCTGGAATTTCCCTCCCTGCAGTGGTGGTACTAAATATAAGATTCCTTGCAAGATCTAGCAATCCACCTTATGACACAGGTTTTTAAATGGAAGGCTAAAAAGAAAAACCGTAGAACCCTAACCCAATTAAGTGGGGAAAGAGTACAGCCATGAACCAA
TTAAGTGGGCAAAAATAAGAACCCTATCCCAATTAAATGTGGGTGTTTATCTATGAGCAAAAACTTTAAATAATTGTAGTTTATTA