sp|Q9XGM2|MRE11_ARATH ----> Double-strand break repair protein MRE11
Intron 1 GTGAGGGCCA ... TCTGCAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.96 | 35 | 16 | 20 |
| A2 | 29.55 | 31 | 11 | 15 |
| A3 | 28.09 | 32 | 7 | 18 |
| A4 | 31.34 | 23 | 2 | 19 |
| A5 | 41.67 | 7 | 2 | 8 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 30 | 7 | 0 | 6 |
| A8 | 25 | 3 | 2 | 0 |
| A9 | 23.08 | 10 | 1 | 5 |
| A10 | 31.43 | 12 | 0 | 11 |
>TRINITY_DN122297_c0_g1_i8 from sample A1 / Example spliced isoformAATGACTAGAGTTTTTGGTTCATGGTGATACTGGAGTATGTGAAAGTGTGGTGATATGGGATTGTGTGAAAGTTCAACAATGTTTTGTGATATGGTATTATGTGAAAGTTCAATAGTATCATTGGCATTATGTGAAAGTTCAATAGTATCGTTGGCATTTAGCTTTTTTTGTAGCAAACCGTCTGCTTTAATGATATACT
TTTATGGATCTTTAGTTTCCACATTACATGCGATACAGGTCATTGATAGACTTCTGTGATCTATTACTGCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGAA
TAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATTT
TATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCA
GAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGC
ACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAAT
CAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACC
CATGTTTTCCAGATTATTATTG
>TRINITY_DN122297_c0_g1_i4 from sample A1 / Example unspliced isoform:ATTCACCTTATCCTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTA
GCCTTAAGCTAAGTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGA
ATAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATT
TTATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGgtgagggccatataagagcaaggtgataacgatttaaacacagcaattataaaatcaacacatattttgttcac
cttaatgagattgtttgctttgaagtttgaatgtcaggttagttaattcctggtcttttatgccagtgaaacttactaatcatgggagcaatgatctttgatgtcacacggttaatttaatatcaggagctgtagtatgctcatgttaaattcaaagttataagaaaaaaatgactaaattgattttttcttctgcagca
gGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAG
TTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAG
AAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGG
CCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCTCTATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTC
AGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACT
GTAAGCCTTTT
Intron 2 GTACGAAAAT ... CGTAACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.15 | 21 | 0 | 18 |
| A2 | 44.44 | 15 | 5 | 12 |
| A3 | 36.73 | 31 | 6 | 18 |
| A4 | 35 | 26 | 7 | 14 |
| A5 | 44.44 | 10 | 10 | 8 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 26.32 | 14 | 0 | 5 |
| A8 | 0 | 1 | 1 | 0 |
| A9 | 45.45 | 6 | 0 | 5 |
| A10 | 28.13 | 23 | 0 | 9 |
>TRINITY_DN108121_c0_g2_i6 from sample A2 / Example spliced isoformCTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTAGCCTTAAGCTAA
GTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCA
ACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTGTGTCCAGGGCCTATTTCCTTCCAAAA
>TRINITY_DN108121_c0_g2_i4 from sample A2 / Example unspliced isoform:CTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTAGCCTTAAGCTAA
GTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGgtacgaaaattttaaatacttagctggttaaatttcgaaccatgggtttaaccttggcgcttaactgcattttcgctctgtaaaatttgaaaatatggacatagtgggccctagtaatgccaatgcagcattacagttt
tcgcattatggactccattctgcgtaacacagGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGC
CAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTGTGTCCAGGGCCTATTTCCTTCCAAAA
Intron 3 GTGCTCGAAG ... AAGTCATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.6 | 19 | 45 | 38 |
| A2 | 69.23 | 16 | 36 | 36 |
| A3 | 62.59 | 26 | 45 | 42 |
| A4 | 66.1 | 10 | 17 | 22 |
| A5 | 75 | 5 | 15 | 15 |
| A6 | 67.35 | 8 | 17 | 16 |
| A7 | 61.4 | 44 | 73 | 67 |
| A8 | 66.28 | 29 | 64 | 50 |
| A9 | 66.46 | 27 | 51 | 56 |
| A10 | 60.49 | 32 | 47 | 51 |
>TRINITY_DN43804_c0_g1_i7 from sample A7 / Example spliced isoformACATCAATGGTGGACACAAGGGTGTGTCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGG
AATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTG
TTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGGCCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCTCGATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAAC
TTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTCAGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAG
TGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACTGTAAGCCTTTTTCCCATGGCAAAGTAAAGACTGATAATTTAAATTCCTCTACTGGGTTATCAGAAAGAGGGCATATAGAAGGGGGTCATAAGAGAAAATCTATGGACAAGAGAAAAACTAATGCAGTTGTAGAGGTAACAT
TTAAACAAGCAGATCCAAGTCTTGCAACACTGGTTTTGTCTACAAATAATTCAGAGGTTTCTTCTAAAGAAGGCAATAGAGATGGCATACGTAGACAAGGAAGAAGCAGGAGGCGTTCTGCTTCTGCAGGGATCAGGGTATGTAAAGCTGGTGACAAAATAGATATAACTTCGAACACAAAGCAGCTTCGAAGTATGAGG
ATGGTTTTTGATAAAGTGAAAAACAAGCCAAGCCAACCTCTGACCAAAAAAAGGTCATCTGATTGCAAGTCCTTTACTAGATCCAGGTGCACAGTAAATAGTGTGTCATCAGACCTTACAGGGGAAATGGATGATGATCGTGAAGAAATTGTAGCAGCTGCTGAAGCTGCTATTAATACAAGGGATGTTGCATGTTCTGG
GCCATTTTGGAAGGAAATGGAGCATTACTTTGCAGTTCCTACAAAAGATGATACAGATTACCTGAAGCAATATGTTGATTTTGTTTGTAAGACAACACCAACATCTTCCAGCCAACCCACATGCTCGTCAAATAAAAAATTGGATAATGATGCTTTGGGGCTCTTTGGCAGTCTGAAAAAACTGCCGTCATTATCAGAGG
TGGTTCTTTCTGCTTTTACCACTGAGGATGTGACTGAACAAAGAACAAGGATTCAAGATGATGGTGAACAGCATGGCAACTTTGATTACATGTCCGAGGTATCACCTTCTGGAATTTGTAATGATATTGACTGTGGGTCCAAGGGTTCTAGCAGAAGGAAATCAGAGATGGGAGCAGAAATGAACAGAGATAATGATAGA
GTAAACAGGTGTTATGCATGTTCTACATCCTCAAATGCCCATCAAATATATTTATCAGGAGTCCTTTTCCAAAATGATGAAACTGGATTGGAAGGAGATGTTGAAGATTCAGAGTTGGATGCTTTGGATGAAAGACATCCACGAGTCTGGCAGAAGAATCAAGATGATCTAATTTCTGGCCACCAATCTGATAGCACGGT
TTCTTCCATATTTACAGATGCAATTGAGTACAAAAACATGTGTTTGGAATCTCTAGACAGTAGGATTCTACAGGAACTTCAACATACGCTTCCAGAAGCCGTGCCTGATCTAGCATTGAGAGAAGATGACGAAATATCGGAGTACCTTCACAAACTTCAGAATGAACTTCAACAACAGGAAGCCAAAAATAAAGCACGAA
TATACAATCTGGAAAAGGCTGTTTTGAGGAAGCGGCAATTTGAAGACAGGGAGCGAGAGCATCTTGCTATGAACAAGCTTTTGGAGAGAGCTTTTAATCGACGCATAGGACACCGAGGTACAAATTTCTCTCCAAAGAGTTCAGGAAGCAGGGTTGCAAAGCAGGCTGCATTGTCTTTTGCAAAGCGGACATTAGAAAGG
TGTCGAAACTTTGATGCAACAGGCAGGAGTTGCTTTACTGAAGCCACCTTGAAGGAAAAGCTTTTCTGTATAAATTCCAAGGAGACAGACATAAAATCTACTGCAGATACAACCGAGTGCAAGACTCTCCCAGCAAATTCAAATTCTGGAGATGTTTCTACTTTGGCTTCGGAGAATTCTGGTCATCTTGTAGCTCAGCA
GATACAGAAGAAAGACATGGAAAGCAAGGAACAATCCGATTCATGCCAGGCAGCTACATCTTCATTAGAACAAACTGGTCGGAAAGATGATTCAGGTTCTATACGAACAAGAAATAAGGAAGTGCTCCTTGAGGATGTAGTTAGAAGCAGTGACCTAAGAAACTCATCTGTTCCTGGAACTTCTCTAATTGGATGGAGAA
AGGGCAAGCATGGTGAGAGGGAGCAAGAGGGAAAGGGAAAGAATAAGGAGATCATAGCCAGAATGAACAATGCTAAGAGTGGTCGACACTGTTCAAGGAATGTCATGGGAGAGAGAGAAACGAAAAGAAAACCAAGGCAGAGAAATGCTCAGCTATCAAAGGAGGTGAATGATCTACCGAGCAAGCCCACTGAAGGACAA
AACAAATGTTCATCAAATTTTAATGAAAATGCTAGGGATAAAAGCATTAAAGCGAAGGGTGAATTTAAAATAGGAACTAGTCCTGGTATTTCTCAGGATGTACAATGTGAATCTGAGGGAGCCATTGATTTGTGGGTGGGTGACCAACATCATGACTTGAGTACATTTTGGAATTTTGAGGAGGATATCTTGCCTGATGC
AGCGGGTGATTATAATCTTGAAGTGCCCATGGATGACCTTTTTGACATTAGAATGATCTGAGAACATGTTCTCTCAGGTTTTAACTTTTTATGGCTTTAGTTTGATTCAATAGCTGTACAGTACAGACAATATTTGTAAGGATTCAGCAAAAAGAGAACTAAAGCAATGAGTTATCTTTTGCTGATGAATGCCACTTGTA
CCATAGTAGGATAGATGTATTCCTTTGAAATATTTATATATAAGTTAGCTATTGGTGCATTATGCATTTCAAAAACTGCATGCATCAATTGCTCCGCTTGTAATGATGTGCAAATGTTGATTCCTCACTTGGTTCCATAAAAGCTTGCGTTCTCTCCCAGTTTATGGCAGGTATTCAGTTGTGATTGTAGCCTTTGATTC
TATAAAGGTGCCAAACTTGGCAGTGAATTCATTCAGTGCTGTTTGTGACTTACTCATGAGGTTGTTGTAGTTAGTGATATTATGGTACAATAGCTGCATGTTTTTATTTCAGTTAGATTGGATCAATTTTGCCTTTTCTGTCATGATCACATGGGCCGAAAGTTCTCGTACTATGCTTTGATAACTCCTTCGCAAATATA
CTTTATTTGATGGTATTGGAAACCCGATTGTGGCC
>TRINITY_DN43804_c0_g1_i4 from sample A7 / Example unspliced isoform:GTGCCTATACATCACATTCATAAGTGCAGTTATCATCAGTGATCCTCTCAATTTATCATTAGATTTGCAACTAGTTGCTTTTGATGTACTGTCTTGCTGGTTTTAAACTGCAGCCTGATCTAGCATTGAGAGAAGATGACGAAATATCGGAGTACCTTCACAAACTTCAGAATGAACTTCAACAACAGGAAGCCAAAAAT
AAAGCACGAATATACAATCTGGAAAAGGCTGTTTTGAGGAAGCGGCAATTTGAAGACAGGGAGCGAGAGCATCTTGCTATGAACAAGCTTTTGGAGAGAGCTTTTAATCGACGCATAGGACACCGAGGTACAAATTTCTCTCCAAAGAGTTCAGGAAGCAGGGTTGCAAAGCAGGCTGCATTGTCTTTTGCAAAGCGGAC
ATTAGAAAGGTGTCGAAACTTTGATGCAACAGGCAGGAGTTGCTTTACTGAAGCCACCTTGAAGGAAAAGCTTTTCTGTATAAATTCCAAGGAGACAGACATAAAATCTACTGCAGATACAACCGAGTGCAAGACTCTCCCAGCAAATTCAAATTCTGGAGgtgctcgaagctccttggatatgaagtcattagATGTTT
CTACTTTGGCTTCGGAGAATTCTGGTCATCTTGTAGCTCAGCAGATACAGAAGAAAGACATGGAAAGCAAGGAACAATCCGATTCATGCCAGGCAGCTACATCTTCATTAGAACAAACTGGTCGGAAAGATGATTCAGGTTCTATACGAACAAGAAATAAGGAAGTGCTCCTTGAGGATGTAGTTAGAAGCAGTGACCTA
AGAAACTCATCTGTTCCTGGAACTTCTCTAATTGGATGGAGAAAGGGCAAGCATGGTGAGAGGGAGCAAGAGGGAAAGGGAAAGAATAAGGAGATCATAGCCAGAATGAACAATGCTAAGAGTGGTCGACACTGTTCAAGGAATGTCATGGGAGAGAGAGAAACGAAAAGAAAACCAAGGCAGAGAAATGCTCAGCTATC
AAAGGAGGTGAATGATCTACCGAGCAAGCCCACTGAAGGACAAAACAAATGTTCATCAAATTTTAATGAAAATGCTAGGGATAAAAGCATTAAAGCGAAGGGTGAATTTAAAATAGGAACTAGTCCTGGTATTTCTCAGGATGTACAATGTGAATCTGAGGGAGCCATTGATTTGTGGGTGGGTGACCAACATCATGACT
TGAGTACATTTTGGAATTTTGAGGAGGATATCTTGCCTGATGCAGCGGGTGATTATAATCTTGAAGTGCCCATGGATGACCTTTTTGACATTAGAATGATCTGAGAACATGTTCTCTCAGGTTTTAACTTTTTATGGCTTTAGTTTGATTCAATAGCTGTACAGTACAGACAATATTTGTAAGGATTCAGCAAAAAGAGA
ACTAAAGCAATGAGTTATCTTTTGCTGATGAATGCCACTTGTACCATAGTAGGATAGATGTATTCCTTTGAAATATTTATATATAAGTTAGCTATTGGTGCATTATGCATTTCAAAAACTGCATGCATCAATTGCTCCGCTTGTAATGATGTGCAAATGTTGATTCCTCACTTGGTTCCATAAAAGCTTGCGTTCTCTCC
CAGTTTATGGCAGGTATTCAGTTGTGATTGTAGCCTTTGATTCTATAAAGGTGCCAAACTTGGCAGTGAATTCATTCAGTGCTGTTTGTGACTTACTCATGAGGTTGTTGTAGTTAGTGATATTATGGTACAATAGCTGCATGTTTTTATTTCAGTTAGATTGGATCAATTTTGCCTTTTCTGTCATGATCACATGGGCC
GAAAGTTCTCGTACTATGCTTTGATAACTCCTTCGCAAATATACTTTATTTGATGGTATTGGAAACCCGATTGTGGCC
Intron 4 GTATTTAACA ... ATTGATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.53 | 25 | 6 | 0 |
| A2 | 14.29 | 12 | 2 | 0 |
| A3 | 18.96 | 17.7 | 4 | 0 |
| A4 | 0 | 9.3 | 0 | 0 |
| A5 | 0 | 3.3 | 0 | 3 |
| A6 | 22.5 | 11 | 3 | 0 |
| A7 | 24.63 | 28.3 | 9 | 0 |
| A8 | 33.02 | 28.7 | 14 | 0 |
| A9 | 5.63 | 34.7 | 2 | 1 |
| A10 | 33.89 | 25.7 | 13 | 0 |
>TRINITY_DN42230_c1_g1_i3 from sample A9 / Example spliced isoformCCCACATGGAGAATCGTAAGGGCTCGCCATGCAAAGAGCAAATGTGAAGCAGAATATAAAATCCCAATTTGTTAGAAAAAATTTAAAATCGATATAAGAAAACGAACAAGCCATTAAATTGGCTTCTGTCTTTCCCCTCCTGGTAAGCTTTCATTTTCGTGGGAGCATTAATAGTTGACGCCTTCAACATATTTCGCTCT
CCCGGAGGCGGCATATTCTGCGTCCAACAGAGAGGGGATTGTTAGTTGCTTGCAAACTTCCATTATTGAAAGATGGAGGATTATAGCAGTACATTGCGGATACTTGTTGCTACAGATTGCCATCTTGGTTATATGGAAAAGGATGAAATTCGCCGCCATGATTCATTTTATGCATTTGAAGAGATATGCTCAATAGCTGA
GCAGCGAAAGGTAGATTTTTTGTTACTTGGTGGTGATCTTTTTCATGAAAACAAGCCATCGAGGACAACTCTAGTAAAAACTATAGAAATCCTGCGGCGTTACTGTCTCAATGACCAGCCAGTACAGTTTCAAGTTGTCAGCGATCAGACAGTGAATTTCACAAACGTATTTGGGCATGTAAATTATGAAGACCCTAATT
TCAATGTTGGTTTGCCAGTGTTCACTATTCATGGCAACCATGACGATCCAGCGGGAGTGGATAATCTTTCTGCGATTGACATCCTTTCTGCATGTAATCTTGTGAACTATTTCGGAAAAATGGTGCTTGGAGGCTCTGGGGTTGGTCAGATTACTATTTATCCTATACTTATCAGAAAGGATTTTACATCTGTTGCTCTC
TATGGTCTGGGAAATATACGCGATGAGCGGCTTAACCGCATGTTCCAGACTCCCCATGCTATTCAGTGGATGCGGCCTGAACCTCAGGAGGGATGCCCCATGTCAGAATGGTTCAATATTTTGGTTCTTCATCAAAACAGGGTCAAAACCAATCCCAAAAATGCCATTAACGAGCAGTTCCTTCCACGGTTCCTAGATCT
TGTAGTTTGGGGGCATGAACACGAATGCTTGATTGATCCACAGGAAGTTCCTGGAATGGGTTTTCATTTAACGCAGCCGGGCTCTTCTGTTGCAACATCTCTGATTGATGGCGAAGCAAAGCCCAAGCATGTGCTTCTTCTGGATATAAAGGGGAGCCAATATCGACCAACCAAAATCCCTTTACAGTCAGTGAGACCTT
TTGAATATCAAGAGGTTGTATTGAAGGATGAACCTGATTTAGATCCCAATGATCAAGATGCTGTTCTAGAATATCTAGATAAAGTGGTAAAAGATATGATTGTACTGGCTGAAAAAAAGAAAGTTAGTCGTCCGGAACTCAAGATTCCTTTAGTTCGAATTAAGGTAGACTATACAGGTTTCACAACAATAAATCCTCAA
AGATTTGGTCAAAAATTTGTTGGAAAGGTTGCAAATCCACATGACATTCTTCTCTTTTCAAAGGCCACAAGAAGGCAGCAATCCATGGATGAAAAGATTCAAGATGCTGAACGGCTGCGTCCAGAGGAACTTAACCAGCAAAATATTGAGGCCCTGGTTGCAGAAAGTAATTTGAAGATGGAGATCCTTCCAGTTAATGA
TCTAGATGTTGCACTGCACGAATTTGTTAATAAGGACGATAAATTGGCTTTCCATTCTTGTTTGCAGCACAATCTTGAGGAGACACGGAATAAGCTTGTTGAAGAAGCAGATGTATTGGAAATTAAAGAGGAGGAGGAGTTGATCCACAAAGTGGGCCAATGCATGCAGGAACGTGAAAAAGATAGAGCATTACGTCCAA
AGACAGGTTTGTCAGTTGGGTCCAGCTCTCAGCCCTCACAGGTAAGATCATTTGATAGTGTTAAACATCATCATTCTGAATATAGTAGTATTGTTAATATGCATTATGTTTTCTTAACCAAACTAGTGTGGCTTTCCCAAGTAATAATCTCATGAAC
>TRINITY_DN42230_c1_g1_i19 from sample A9 / Example unspliced isoform:CCCACATGGAGAATCGTAAGGGCTCGCCATGCAAAGAGCAAATGTGAAGCAGAATATAAAATCCCAATTTGTTAGAAAAAATTTAAAATCGATATAAGAAAACGAACAAGCCATTAAATTGGCTTCTGTCTTTCCCCTCCTGGTAAGCTTTCATTTTCGTGGGAGCATTAATAGTTGACGCCTTCAACATATTTCGCTCT
CCCGGAGGCGGCATATTCTGCGTCCAACAGAGAGGGGATTGTTAGTTGCTTGCAAACTTCCATTATTGAAAGATGGAGGATTATAGCAGTACATTGCGGATACTTGTTGCTACAGATTGCCATCTTGGTTATATGGAAAAGGATGAAATTCGCCGCCATGATTCATTTTATGCATTTGAAGAGATATGCTCAATAGCTGA
GCAGCGAAAGGTAGATTTTTTGTTACTTGGTGGTGATCTTTTTCATGAAAACAAGCCATCGAGGACAACTCTAGTAAAAACTATAGAAATCCTGCGGCGTTACTGTCTCAATGACCAGCCAGTACAGTTTCAAGTTGTCAGCGATCAGACAGTGAATTTCACAAACGTATTTGGGCATGTAAATTATGAAGACCCTAATT
TCAATGTTGGTTTGCCAGTGTTCACTATTCATGGCAACCATGACGATCCAGCGGGAGTGGATAATCTTTCTGCGATTGACATCCTTTCTGCATGTAATCTTGTGAACTATTTCGGAAAAATGGTGCTTGGAGGCTCTGGGGTTGGTCAGATTACTATTTATCCTATACTTATCAGAAAGGATTTTACATCTGTTGCTCTC
TATGGTCTGGGAAATATACGCGATGAGCGGCTTAACCGCATGTTCCAGACTCCCCATGCTATTCAGTGGATGCGGCCTGAACCTCAGGAGGGATGCCCCATGTCAGAATGGTTCAATATTTTGGTTCTTCATCAAAACAGGGTCAAAACCAATCCCAAAAATGCCATTAACGAGCAGTTCCTTCCACGGTTCCTAGATCT
TGTAGTTTGGGGGCATGAACACGAATGCTTGATTGATCCACAGGAAGTTCCTGGAATGGGTTTTCATTTAACGCAGCCGGGCTCTTCTGTTGCAACATCTCTGATTGATGGCGAAGCAAAGCCCAAGCATGTGCTTCTTCTGGATATAAAGGGGAGCCAATATCGACCAACCAAAATCCCTTTACAGTCAGTGAGACCTT
TTGAATATCAAGAGGTTGTATTGAAGGATGAACCTGATTTAGATCCCAATGATCAAGATGCTGTTCTAGAATATCTAGATAAAGTGGTAAAAGATATGATTGTACTGGCTGAAAAAAAGAAAGTTAGTCGTCCGGAACTCAAGATTCCTTTAGTTCGAATTAAGGTAGACTATACAGGTTTCACAACAATAAATCCTCAA
AGATTTGGTCAAAAATTTGTTGGAAAGGTTGCAAATCCACATGACATTCTTCTCTTTTCAAAGGCCACAAGAAGGCAGCAATCCATGGATGAAAAGATTCAAGATGCTGAACGGCTGCGTCCAGAGGAACTTAACCAGCAAAATATTGAGGCCCTGGTTGCAGAAAGTAATTTGAAGATGGAGATCCTTCCAGTTAATGA
TCTAGATGTTGCACTGCACGAATTTGTTAATAAGGACGATAAATTGGCTTTCCATTCTTGTTTGCAGCACAATCTTGAGGAGACACGGAATAAGCTTGTTGAAGAAGCAGATGTATTGGAAATTAAAGAGGAGGAGGAGTTGATCCACAAAGTGGGCCAATGCATGCAGgtatttaacactatggtaatacatttgatgt
tgtgattgcctgcatattagggatactcttgttttaggaggccttctgcatatacatatttgctgttccctgtcaagagacagtacagtctcttgttctgaatgtctatacgattgatccagGAACGTGAAAAAGATAGAGCATTACGTCCAAAGACAGGTTTGTCAGTTGGGTCCAGCTCTCAGCCCTCACAGGTAAGA
TCATTTGATAGTGTTAAACATCATCATTCTGAATATAGTAGTATTGTTAATATGCATTATGTTTTCTTAACCAAACTAGTGTGGCTTTCCCAAGTAATAATCTCATGAAC
Intron 5 GTGAGGGCCA ... TAAGAGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.56 | 35 | 27 | 34 |
| A2 | 43.64 | 31 | 24 | 24 |
| A3 | 44.35 | 32 | 23 | 28 |
| A4 | 45.24 | 23 | 14 | 24 |
| A5 | 36.36 | 7 | 2 | 6 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 44 | 7 | 4 | 7 |
| A8 | 45.45 | 3 | 3 | 2 |
| A9 | 44.44 | 10 | 6 | 10 |
| A10 | 46.67 | 12 | 7 | 14 |
>TRINITY_DN122297_c0_g1_i8 from sample A1 / Example spliced isoformAATGACTAGAGTTTTTGGTTCATGGTGATACTGGAGTATGTGAAAGTGTGGTGATATGGGATTGTGTGAAAGTTCAACAATGTTTTGTGATATGGTATTATGTGAAAGTTCAATAGTATCATTGGCATTATGTGAAAGTTCAATAGTATCGTTGGCATTTAGCTTTTTTTGTAGCAAACCGTCTGCTTTAATGATATACT
TTTATGGATCTTTAGTTTCCACATTACATGCGATACAGGTCATTGATAGACTTCTGTGATCTATTACTGCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGAA
TAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATTT
TATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCA
GAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGC
ACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAAT
CAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACC
CATGTTTTCCAGATTATTATTG
>TRINITY_DN122297_c0_g1_i1 from sample A1 / Example unspliced isoform:AATGACTAGAGTTTTTGGTTCATGGTGATACTGGAGTATGTGAAAGTGTGGTGATATGGGATTGTGTGAAAGTTCAACAATGTTTTGTGATATGGTATTATGTGAAAGTTCAATAGTATCATTGGCATTATGTGAAAGTTCAATAGTATCGTTGGCATTTAGCTTTTTTTGTAGCAAACCGTCTGCTTTAATGATATACT
TTTATGGATCTTTAGTTTCCACATTACATGCGATACAGGTCATTGATAGACTTCTGTGATCTATTACTGCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGAA
TAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATTT
TATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGgtgagggccatataagagcaagGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGAT
CTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGC
AGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAA
TGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGGCCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGA
AAGATCTCTCAGAAGCCTCTATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTCAGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACG
AATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACTGTAAGCCTTTT
Intron 6 GTGAGGGCCA ... TCTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.67 | 34 | 16 | 17 |
| A2 | 27.91 | 31 | 11 | 13 |
| A3 | 27.91 | 31 | 7 | 17 |
| A4 | 29.58 | 25 | 2 | 19 |
| A5 | 40 | 6 | 2 | 6 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 29.41 | 6 | 0 | 5 |
| A8 | 25 | 3 | 2 | 0 |
| A9 | 23.08 | 10 | 1 | 5 |
| A10 | 28.21 | 14 | 0 | 11 |
>TRINITY_DN122297_c0_g1_i2 from sample A1 / Example spliced isoformATTCACCTTATCCTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTA
GCCTTAAGCTAAGTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGA
ATAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATT
TTATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGCAGGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGAT
TCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGT
TCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTG
GAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGGCCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCT
CTATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTCAGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAAC
TGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACTGTAAGCCTTTT
>TRINITY_DN122297_c0_g1_i4 from sample A1 / Example unspliced isoform:ATTCACCTTATCCTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTA
GCCTTAAGCTAAGTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGA
ATAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATT
TTATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGgtgagggccatataagagcaaggtgataacgatttaaacacagcaattataaaatcaacacatattttgttcac
cttaatgagattgtttgctttgaagtttgaatgtcaggttagttaattcctggtcttttatgccagtgaaacttactaatcatgggagcaatgatctttgatgtcacacggttaatttaatatcaggagctgtagtatgctcatgttaaattcaaagttataagaaaaaaatgactaaattgattttttcttctgcagCA
GGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAG
TTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAG
AAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGG
CCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCTCTATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTC
AGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACT
GTAAGCCTTTT
Intron 7 GTGATAACGA ... TCTGCAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.04 | 34 | 11 | 20 |
| A2 | 38.46 | 24 | 2 | 15 |
| A3 | 39.13 | 28 | 4 | 18 |
| A4 | 44.19 | 24 | 0 | 19 |
| A5 | 57.14 | 6 | 1 | 8 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 46.15 | 7 | 0 | 6 |
| A8 | 0 | 2 | 1 | 0 |
| A9 | 33.33 | 10 | 1 | 5 |
| A10 | 44 | 14 | 0 | 11 |
>TRINITY_DN122297_c0_g1_i7 from sample A1 / Example spliced isoformATTCACCTTATCCTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTA
GCCTTAAGCTAAGTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGA
ATAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATT
TTATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGGTGAGGGCCATATAAGAGCAAGGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGA
TCTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAGTTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTG
CAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAGAAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGA
ATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGGCCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGG
AAAGATCTCTCAGAAGCCTCTATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTCAGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGAC
GAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACTGTAAGCCTTTT
>TRINITY_DN122297_c0_g1_i4 from sample A1 / Example unspliced isoform:ATTCACCTTATCCTTCCTCCTTTAGTGTTATGATTAGGATCCTTGTCAAGAATGAATGGTTTTGAGATCCAACTCCATGCCAACCGGGTTTAAGTCCGGTCGAATCACAACCCTAGTTTGTATTTGTCGAGAAACACCCTCTTTTTGAAACCCTTGCTGATTAATAAATATGAGATTGTACTAAGTAAATAGCCTTGTTA
GCCTTAAGCTAAGTGTGGTGACTTTGAATTTGGAGGTGAACGTGTTTTTTCTGCTGCAGGAGTTCCGCTTCAGCATTTCCTAGTTACTACTGTCATTTGTACTGGAGTTAAGGAGACACATGGGGGAAAACACAGAAGGAATGAGGCACCCATGTTTTCCAGATTATTATTGAGAATTTTGACTTTTTGAATAGCTAAGA
ATAATGTCTTCCAACTTGAGATCTGAGCAAACCTCCAGAAACTAAGATAGATCCAAATTGTTTGCTGGTTATTCAAATGGACAACGAAGTAATTTCTTAAGTTCTTCCAGTTTGGGTAGGTCAGGCAGTTTTCATGGAAATCAGCAAAAAAAAAAACTGGATTACAACACCAGGAACCATTCTGCCTGTTATCACAGATT
TTATCCTTGGATACATTATCCCTTGATGATCAGAAAGGTGCACGTTAGGTGGAGTCGGGACTGTTCAGGCAAAGTCTCTTGCTTCCTTGGGACCTGATAAGCTCAAACAACTGAAGAAAAACATTGGTGAGGGCCATATAAGAGCAAGgtgataacgatttaaacacagcaattataaaatcaacacatattttgttcac
cttaatgagattgtttgctttgaagtttgaatgtcaggttagttaattcctggtcttttatgccagtgaaacttactaatcatgggagcaatgatctttgatgtcacacggttaatttaatatcaggagctgtagtatgctcatgttaaattcaaagttataagaaaaaaatgactaaattgattttttcttctgcagca
gGGGGCATGTGAAACTTCTGGATGAAGCCATTACAAAATTGGACAAGTACAGATCTTCCCTGCTATCCAGATTCCAGAAGCTAGTCTCGATCAGAAATATTGGCAAATGTGCGACCAAACAGCTCCCTGATTTGTGATCAACATGCTGCTGCTGTAATTTCCTACAAGCCAGGGCCTATTTCCTTCCAAAACCAAACCAG
TTCAAATTCTACAGATATGGGGTCTCGCATAACAGATGATAGAAACAAATCTGCAGTACCTAATAAGCGAGTTCGCACATCAATGGTGGACACAAGGGTCAGAGGACGTCTCAATAATGCTAATTTGCCTAGACTATCTGGAATGCTAGATCATGAAAGATATTTTTTAAAGCCCAGAAGCTCCAGTTTGAGTCAGGCAG
AAGATAAGGATCGTGTGCTACCTCCTGAAAAAGGAAATTGTGAAAAGCTAAGAATGAAAGGTAACCATTCTGGAATCAAGACAGACATTTCTTCAACGTCAATGATCAACAGACACAAAGACCGGGAGCATAAATTGGGTGTTCAACATAAGAGTAATAATGATAGCCGAGCAAGGCCAAGTGAAAGACCTGGTTTCAGG
CCAACTATGCATGAAGAGAATCAGGCAGCTAGCTCAACTGCAATAATAAACGGAAAGATCTCTCAGAAGCCTCTATCTAGTTCAGCCACATCAGCTATTTCTTCACAATGTGTTGTTCATCCAGGTACAAACAGGATCAACTTTGCCCCTGGATTAGGTAATGGCAAACGTTCAGCACAAACAATATCTTCATCACCCTC
AGTTGCACAATGGGTTGGGCAGAGGCCAGTAAAGACAGCCCGAATTGCAAGACGAATTAACTTGGCTCCAACTGCAATTCAAGTTGATGATAGAAGTTTTGCAGAAGGTTTTGGTTATAATGACACTTCTGGTGGTGAGAGTGCTAAACCTGATTCCCATGCAATCTTGGGGTCAGATGTTGCAGGACGTTTATCCAACT
GTAAGCCTTTT