sp|O49817|LEA2_CICAR ----> Late embryogenesis abundant protein 2

Intron 1 GTACTTGTTT ... TTTTGAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	35.12	2117	1146	1
A2	35.26	2444	1331	3
A3	35.48	2861	1573	0
A4	35.53	1931	1064	2
A5	36.74	1002	582	1
A6	35.42	17775	9748	1
A7	35.17	17346	9411	2
A8	35.41	17739	9724	8
A9	35.54	25825	14237	3
A10	35.3	13413	7318	2

>TRINITY_DN107535_c0_g1_i21 from sample A4 / Example spliced isoform

CTATTTTGATGCATGGTGACACGCCTTCAATGTCTCGGCGACATCTGTCTAGAGACGTGTCAATCTGAGGCGCTCTCCTCCCTCATCTTTATAAGGGACACTGTCTCTCCTTCTTTTCAAGACAAAGTTTGGCGCAGCAGTACTACCATTTGAGAGCATTGCATTACCGTTCAAGAAGTCCATCGATCGATCTATTGTTA
TTCACAAAGATGGCGAATCAGTGCAAGCAATATGGCCACGAGAAGGCTGGACAAGCTCAGCAAACAACTCAAGGGATGATGGGGACTGCTCAAGAGAAGAGTG

>TRINITY_DN107535_c0_g1_i22 from sample A4 / Example unspliced isoform:

CCTCCCTCATCTTTATAAGGGACACTGTCTCTCCTTCTTTTCAAGACAAAGTTTGGCGCAGCAGTACTACCATTTGAGAGCATTGCATTACCGTTCAAGAAGTCCATCGATCGATCTATTGTTATTCACAAAGATGGCGAATCAGTGCAAGCAATATGGCCACGAGAAGGCTGGACAAGCTCAGCAAACAACTCAAgtac
ttgtttatattatttgtactctctcactctctttagtctctactgttttagaaactcctgttgctttgactgagatggtatattggtattgtatatattgttgttttgagcagGGGATGATGGGGACTGCT

Intron 2 GTTCTTCATC ... TGTAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	1.85	2005.7	5	37.7
A2	2.85	2066.3	5	60.3
A3	2.74	2507	6	69.3
A4	2.7	1356.3	2	37.7
A5	2.54	867	5	22.3
A6	2.88	18797	13	555.3
A7	3.69	17101.7	34	647.3
A8	4.78	19053.7	37	961
A9	4.59	21293.7	40	1022.3
A10	3.64	13922.7	23	509

>TRINITY_DN108277_c1_g1_i15 from sample A5 / Example spliced isoform

GTCTATTTTGATGCATGGTGACACGCCTTCAATGTCTCGGCGACATCTGTCCAGAGCGGTGTCCACTCTCACCTAGCGAGAGAGGTGTCAATCTGAGGCGCTCCCCTCCCTCATCTTTATAAGGGACACTGTCTCTCCTTCTTTTCAAGACAAAGTTTGGCGCAGCAGTACTACCATTTGAGAGCATTGCATTACCGTTC
AAGAAGTCCATAGATCGATCTTGTTATTCAGAAAGATGGCGGATCAGTACAAGCAATATGGCCAGGAGAAGGCTGGACAAGCTCAACAAACAACTCAGGGGATGATGGGGACTGCTCAGGAGAAGAGTGGTCAGATGAAAGACATGACTCAGCAGAAAGCTTCTCACGACAAAGCTTCTCAGACGACTGAAGCGACCAAG
GGAATGGGCCAGTCCGCCATGGGTACAGCTCAGGGAATGGGTCAGTCCGCCATGGGTACAGCCCAGCAGGGGAAGGAGCAAACTGGCTCTTTCTTCCAACAGGCAGGGGAGAAGGCGAAGGGTGC

>TRINITY_DN108277_c1_g1_i13 from sample A5 / Example unspliced isoform:

AACTGGCTCTTTCTTCCAACAGgttcttcatcattttatcagaaaataattgtattgtctgtttttaggagcagattcaacagatttaactattgaatttgaaagattcaacagatttaactattgaatttgaaagattcaacagatttaactattgatgttaatgtgaatgtgtaatgcagGCAGGGGAGAAGGCGAAG
GGTGCCACGCAGAGTGTCATGGAAGCCGTGAAGAGCCCCTTTGGTGGTCGCGAGTAGCGAGGGCGAGCAGAACGAGTGAGGAGTATCGTGCCATGTTAAGCCTCTATGTGAAGGCAGATTGTAATAATTTTACCATTTTTGTCGATAATAAATATTTGATGCACTAATTGATGTTGATAACAAGTAGATGAATCAGAATC
TAAGATTGTGTAGATAACCTCTTGGAATAGTTGGGTATCTGGATATTTTAAATTATGAGACTGC

Intron 3 GTTGTGCATC ... TGTAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0.13	5109	4	9
A2	0.31	5160	10	22
A3	0.17	6177	10	11
A4	0.26	3392	1	17
A5	0.21	2147	2	7
A6	0.06	48989	29	34
A7	0.16	42738	58	82
A8	0.19	50223	74	113
A9	0.19	53889	82	128
A10	0.18	33797	40	83

>TRINITY_DN121808_c0_g1_i13 from sample A3 / Example spliced isoform

CATGACTCAGCAGAAAGCTTCTCACGCGACTGAAGCGACCAAGGGAATGGGCCAGTCCGCCATGGGTACAGCTCAGGGAATGGGTCAGTCCGCCATGGGTACAGCCCAGCAGGGGAAGGAGCAAACTGGCTCTTTCTTCCAACAGGCAGGGGAGAAGGCGAAGGGTGCTACGCAGAGCGTGATGGAGGCTGTGAAGAGCC
CCTTTGGTGGTACCGAGCAGAACAAGTGATCACCACTACGGTCTCATGCTGAGCAGAACAAGTGATCACCATCACGGTATAGGATGTAGAAGGGACTCTAAAGAATTCAGGACACAGAGAGATTTAGAATGGCCACTGCTCGCAAGGAATCCATCTATTTCGGTTGTCTCCAGTGGCATTGTTGAAAAAAACACTTTATT
TTCAAAATCATTATGAAAACATCAAACAATACGTTGATGTTTTTTCATTTTCAAATTCCATGTATGATTATGATTATCACCTTGGATTATTTATATTTTTTATTTTTAAATTCATATTAAAAAAACACTTTAATTTCAAATTCATTACGAAAATAGCAAAAAGTTGTAAGTATGATTATGATTATTACCTTGGATTATTT
ATATTTTTT

>TRINITY_DN121808_c0_g1_i10 from sample A3 / Example unspliced isoform:

CAGCAGGGGAAGGAGCAAACTGGCTCTTTCTTCCAACAGgttgtgcatcatttatcagaaaatattgtattgtcggtttttaggagcagattcaacagatttaactattgaatatgaaagattcaacggatttaactattgatgttaatgtgaatgtgtaatgcagGCAGGGGAGAAGGCGAAGGGTGCTACGCAGAGCG
TGATGGAGGCTGTGAAGAGCCCCTTTG

Intron 4 GTTCTTCATC ... TGTAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.95	1939	7	514
A2	20.93	2187	10	579
A3	20.11	2690	6	677
A4	20.94	1348	1	357
A5	20.92	911	1	241
A6	23.88	19189	18	6021
A7	22.52	17939	38	5215
A8	25.64	18670	49	6437
A9	23.21	21861	56	6609
A10	20.75	15174	31	3974

>TRINITY_DN108277_c1_g1_i15 from sample A5 / Example spliced isoform

GTCTATTTTGATGCATGGTGACACGCCTTCAATGTCTCGGCGACATCTGTCCAGAGCGGTGTCCACTCTCACCTAGCGAGAGAGGTGTCAATCTGAGGCGCTCCCCTCCCTCATCTTTATAAGGGACACTGTCTCTCCTTCTTTTCAAGACAAAGTTTGGCGCAGCAGTACTACCATTTGAGAGCATTGCATTACCGTTC
AAGAAGTCCATAGATCGATCTTGTTATTCAGAAAGATGGCGGATCAGTACAAGCAATATGGCCAGGAGAAGGCTGGACAAGCTCAACAAACAACTCAGGGGATGATGGGGACTGCTCAGGAGAAGAGTGGTCAGATGAAAGACATGACTCAGCAGAAAGCTTCTCACGACAAAGCTTCTCAGACGACTGAAGCGACCAAG
GGAATGGGCCAGTCCGCCATGGGTACAGCTCAGGGAATGGGTCAGTCCGCCATGGGTACAGCCCAGCAGGGGAAGGAGCAAACTGGCTCTTTCTTCCAACAGGCAGGGGAGAAGGCGAAGGGTGC

>TRINITY_DN108277_c1_g1_i10 from sample A5 / Example unspliced isoform:

AACTGGCTCTTTCTTCCAACAGgttcttcatcattttatcagaaaataattgtattgtctgtttttaggagcagattcaacagatttaactattgaatatgaaagattcaacggatttaactattgatgttaatgtgaatgtgtaatgcagGCAGGGGAGAAGGCGAAGGGTGCTACGCAGAGCGTGATGGAGGCTGTGA
AGAGCCCCTTTGGTGGTACCGAGCAGAACAACTGATCACCGTTACGGTCTCATGGTGAGCAGAACAAGTGATCACCACCACGGTCTCATGCTAAGCCTTACTGTAAATGCAGATTGTAATAATTTTCCCATGTTTATCAATAATAAAATGACATGACAAGCAGATGTTGAGATTGTGTCTATGAGACGAATATTTTGAAA
TTTTGCTCTATTTTTCTTTCGATTTCCAACATTAGTTTTGCTACTTTTATAAAGTTTTCAACATGG

Intron 5 GTTCTTGATC ... GTTAATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	1.69	3789	2	65
A2	1.48	3985	5	60
A3	1.83	4718	2	88
A4	2.93	2620	1	79
A5	2.03	1639	0	34
A6	3.31	38245	4	1311
A7	2.2	32772	2	737
A8	2.53	37221	10	967
A9	2.64	41234	9	1119
A10	1.87	26436	6	503

>TRINITY_DN117881_c1_g1_i18 from sample A2 / Example spliced isoform

CCCTATCAGATCATTGCATACTTTGCATTGCCGCTGAAGAAGTCCATAGATCGATCTTGTTATTCAGAAAGATGGCGGATCAGTACAAGCAATATGGCCAGGAGAAGGCTGGACAAGCTCAACAAACAACTCACGGGATGATGGGGACTGCTCAGGAGAAGAGTGGTCAGATGAAGGATATGACTCAGCAGAAAGCTTCT
CAGGCGACTGAAGCGACCAAGGGAATGGGCCAGTCCGCCATGGGTACAGCTCAGGGAATGGGTCAGTCTGCCATGGGTTCAGCCCAACAGGGGAAGCAACAAACTGGTTCTTTCTTCCAACAGGCTGGGGAGAAGGCAATGGGTGCTACGCAAAGCGTGATGGAGGCAGTGAAGAGCCCCTTTGGTGGTAGCGAGCAGAA
CAAGTGATCACCACTACCGTGCCATGCTAAACCTTTATGTGATTGCAGATTGTAATAATTTCCTCATTTGATTATGAGATTGTGGATATGAGACTTGGAATATTTGAGGTTCTTGATATTTGAATTTATGAATTGTCTCTCTTATTCAGTGAGGCTTCACATTCAGGAG

>TRINITY_DN117881_c1_g1_i19 from sample A2 / Example unspliced isoform:

TGCCATGGGTTCAGCCCAACAGGGGAAGCAACAAACTGGTTCTTTCTTCCAACAGgttcttgatcattttattagaaattattgtaatgtctgtttttaagatataattgaacagattaactattgaatttgaaagttcctttagctttgaatgtattggaaataatcgagtttaataatgttaatccagGCTGGGGAGA
AGGCAATGGGTGCTACGCAAAGCGTGATGGAGGCAGTGAAGAGCCCCTTTGGTGGTAGCGAGCAGAACAAGTGATCACCACTACCGTGCCATGCTAAACCTTTATGTGATTGCAGATTGTAATAATTTCCTCATTTGATTATGAGATTGTGGATATGAGACTTGGAATATTTGAGGTTCTTGATATTTGAATTTATGAAT
TGTCTCTCTTATTCAGTGAGGCTTCACATTCAGGAG

Intron 6 GTTCTTTATC ... TGTGATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0.48	2794.5	5	12.3
A2	1.17	2588.3	13	26.8
A3	1.83	3079	10.3	50
A4	1.23	1832.5	8	20.5
A5	1.22	1095.5	3	11.8
A6	2.92	24930.5	78.3	670.3
A7	3.36	21747.3	113.5	671.3
A8	3.82	26711.8	119	966.5
A9	4.22	28043.8	135.5	1106.8
A10	3.53	16705.5	94	528.8

>TRINITY_DN117881_c1_g1_i11 from sample A2 / Example spliced isoform

CCCTATCAGATCATTGCATACTTTGCATTGCCGCTGAAGAAGTCCATAGATCGATCTTGTTATTCAGAAAGATGGCGGATCAGTACAAGCAATATGGCCAGGAGAAGGCTGGACAAGCTCAACAAACAACTCACGGGATGATGGGGACTGCTCAGGAGAAGAGTGGTCAGATGAAGGATATGACTCAGCAGAAAGCTTCT
CAGGCGACTGAAGCGACCAAGGGAATGGGCCAGTCCGCCATGGGTACAGCTCAGGGAATGGGTCAGTCTGCCATGGGTTCAGCCCAACAGGGGAAGGAACAAACTGGCTCTTTCTTCCAACAGGCAGGGGAGAAGGCGAAGGGTGCAAAGCAGAGTGTGATGGAGGCTGTGAAGAGCCCCTTTGCTGGTAGCGAGTAGAA
CAAGTGATCACGACTACCGTACTGCAATGCTAAGCCTTTCTGTGATTGCATAATGTAATAATTTTCCCATTTTATATCAATAATATATGTTTTATGCACTATTTGATCACATAAATGACATGACAAG

>TRINITY_DN117881_c1_g1_i8 from sample A2 / Example unspliced isoform:

GAAAGCTTCTCAGGCGACTGAAGCGACCAAGGGAATGGGCCAGTCTGCCATGGGTTCAGCCCAACAGGGGAAGGAACAAACTGGCTCTTTCTTCCAACAGgttctttatcatttgacataaactattgtatcgtcggtttataggagctgatgcaaaagataattaactattgaatttgagagcatctcttagcttggaa
tgtgttgaaacgagttcagtttggatggtgttaatgtgaatgtgtgatgcagGCAGGGGAGAAGGCGAAGGGTGCAAAGCAGAGTGTGATGGAGGCTGTGAAGAGCCCCTTTGCTGGTAGCGAGCAGAACAAGTGATCACGACTACCGTACTGCAATGCTAAGCCTTTCTGTGATTGCATAATGTAATAATTTTCCCATT
TTATATCAATAATATATGTTTTATGCACTATTTGATCACATAAATGACATGACAAG