sp|Q93ZX7|GAUT4_ARATH ----> Probable galacturonosyltransferase 4
Intron 1 GTAAGTAATT ... GTATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.24 | 2 | 0 | 15 |
| A2 | 65 | 7 | 1 | 13 |
| A3 | 58.33 | 5 | 2 | 7 |
| A4 | 66.67 | 7 | 2 | 14 |
| A5 | 60 | 4 | 1 | 6 |
| A6 | 72.41 | 16 | 4 | 42 |
| A7 | 61.39 | 39 | 13 | 62 |
| A8 | 70.55 | 43 | 9 | 103 |
| A9 | 71 | 29 | 8 | 71 |
| A10 | 70.93 | 25 | 4 | 61 |
>TRINITY_DN43958_c0_g1_i3 from sample A8 / Example spliced isoformGCCTAGAACGGGGCAGGTAGAAAGAGGCAATGGTGTATTATAGGCCTAGAACGGGGCAGGTAGAAAGAGGCAATGGTGTATTATAGGCCTAGAACGGGGCAGGTAGAAAACTGCTAGTAGACAGTCACGTTCAGGTATTTCAGGGCACTTAACACTGCTTTAATGGTCACCTGGAAACCTGCATTTCCTCCACCTGTTGA
TTGATGTAGCACCTGCATGTACTTCCGCTATTGACAAGAAGGCTTGAGAGCAAGCCAGGAATTTCAGGGCACTTAACACTGCTTTAATTGCCACCTGGAAACTTGCATTTCCTCTACCTATTGATGATCTACCACCTGCATGTACTCCAGTTATTGACAGGAAGGCCTAAGAGCAAACGCTGCAAGGTCCGGGTATAACA
AGTTTTCAAAGGCTTGAAGGTTGGAAAGGCTTGAAGGTTGGAATCTTTCGAGAGACAATAGCTTCTATATACTGCAATTCGCGGTTCACAGGAACTCATGGGTTAAGACTCAAAGCGGTGACATTGCATCCATTTTCATCCCATTTCGGTCATTGGAAACCATTTGGATACCTTAATCGCCAGCAGAATTTTATATTGAC
GATCGCTGGTTGTCTGGATGTGGAGAGTATGCCCGGAGCCTGGTGCTGTTCTTAAAAAACCTGTTGGGGTCATCTACAACGATGGAATTAACAACTCAGATTATATTGATGGTTTCCAAAAAGAGCAGTCTGAAATTAAGGAAAAGATACAGTCAGAACGGAAGGAAAATGATGGAGAAAGCATTTATCGTGAAGGACGC
AATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACATTCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAACATCTTTACCATCCCGAAACTGCCGGTGCCCATC
CTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGATTTCCCACATCAACCAAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCA
TTCTCTGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTTTTCAATTATTCTGTTGTTCTCATATCCATTGACCTAATTCTTCTGTTGTTCTGGCATCCATTGACCTAATTTTGCTGGCCCAAGCCTC
CG
>TRINITY_DN43958_c0_g1_i4 from sample A8 / Example unspliced isoform:GCAACTGATTGCAGTGGCAGAAGCCTTACATTGAATTGCCGGATGTGTTTACAGATGGGGTATAAATGCAACTGAATGCAGTGGCATGGGCTTTACATTAAATTATATTTATGGGCACCGTAGAATCTGAATGATTGTTTCCAGCGGGTTTTTCTTGGGAGAGCCTGGGTATGGTTTCCAGGGCAGCCAATCTTCTCTGC
ATCCGTTTCATTTTACGCGCCAATGGGATGAATTACAGCTCCTTTGTTGGATCTGTTTGAATATGCATGATTAGAAATTCACAATGCGTAGTGCAATGAAAGGGCGGGGTTGCCCATTGCGGAGGCCTGCTACCGTTACTGGTCTCCTCCTGATTTCAGTGGTAGCATCTCTCGTATTTCTAGCGGATAGACTCGCTGAT
TTCTCTGCTACCTCTGGGCAAAAGGATTTCATTGACAATATTTCTAGTATTAGTTTCAGTACCGATTCCGAAGAATTAAGGGCACTTGAGCAGGAGCCGGGTGCTGTTTTTAAAAAACCTGTTGGGGTCATCTACAACGATGGAATTAACAACTCAGATTATATTGATGGTTTCCAAAAAGAGCAGTCTGAAATTAAGGA
AAAGATACAGTCAGAACGGAAGGAAAATGATGGAGAAAGCATTTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACATTCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGAC
ATGAATGCCCTGCAAATACATAAACATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAgtaagtaattagcagattagattggattgtattagactgtgctttcgagtagcctggcatttgaaaggtctgaagaattatattattgtaattat
ttttgctgggttttaatttgctccttcagatgaagcttgcaagatagagggaagaacattcagtacagatgacgaaggccctggatcagtctattcaaatattggaaattaaaagttcgaaagtatgtgcagGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGA
GTATGATTTCCCACATCAACCAAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTTTTC
AATTATTCTGTTGTTCTCATATCCATTGACCTAATTCTTCTGTTGTTCTGGCATCCATTGACCTAATTTTGCTGGCCCAAGCCTCCG
Intron 2 GTAAGTAATT ... GCTCCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.04 | 10 | 0 | 3 |
| A2 | 17.65 | 7 | 1 | 2 |
| A3 | 18.18 | 9 | 2 | 2 |
| A4 | 33.33 | 7 | 2 | 5 |
| A5 | 33.33 | 5 | 1 | 4 |
| A6 | 15.49 | 30 | 4 | 7 |
| A7 | 17.88 | 62 | 13 | 14 |
| A8 | 13.73 | 66 | 9 | 12 |
| A9 | 16 | 63 | 8 | 16 |
| A10 | 18.52 | 22 | 4 | 6 |
>TRINITY_DN43958_c0_g1_i12 from sample A8 / Example spliced isoformGCAATTTGCATGATTATTGGTGAATTAGTTTATATGTGTTTATAACGAACAGATGGAGAAAGCATTTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACATTCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACG
ACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAACATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAATGAAGCTTGCAAGATAGAGGGAAGAACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATA
TTGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGGTTTCCCACATCAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAA
ATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTTTTCAATTATTCTGTTGTTCTCATATCCATTGACCTAATTCTTCTGTTGTTCTGGCATCCATTGACCTAATTTTGCTGGCCCAAGCCTCCG
>TRINITY_DN43958_c0_g1_i4 from sample A8 / Example unspliced isoform:GCAACTGATTGCAGTGGCAGAAGCCTTACATTGAATTGCCGGATGTGTTTACAGATGGGGTATAAATGCAACTGAATGCAGTGGCATGGGCTTTACATTAAATTATATTTATGGGCACCGTAGAATCTGAATGATTGTTTCCAGCGGGTTTTTCTTGGGAGAGCCTGGGTATGGTTTCCAGGGCAGCCAATCTTCTCTGC
ATCCGTTTCATTTTACGCGCCAATGGGATGAATTACAGCTCCTTTGTTGGATCTGTTTGAATATGCATGATTAGAAATTCACAATGCGTAGTGCAATGAAAGGGCGGGGTTGCCCATTGCGGAGGCCTGCTACCGTTACTGGTCTCCTCCTGATTTCAGTGGTAGCATCTCTCGTATTTCTAGCGGATAGACTCGCTGAT
TTCTCTGCTACCTCTGGGCAAAAGGATTTCATTGACAATATTTCTAGTATTAGTTTCAGTACCGATTCCGAAGAATTAAGGGCACTTGAGCAGGAGCCGGGTGCTGTTTTTAAAAAACCTGTTGGGGTCATCTACAACGATGGAATTAACAACTCAGATTATATTGATGGTTTCCAAAAAGAGCAGTCTGAAATTAAGGA
AAAGATACAGTCAGAACGGAAGGAAAATGATGGAGAAAGCATTTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACATTCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGAC
ATGAATGCCCTGCAAATACATAAACATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAgtaagtaattagcagattagattggattgtattagactgtgctttcgagtagcctggcatttgaaaggtctgaagaattatattattgtaattat
ttttgctgggttttaatttgctccttcagATGAAGCTTGCAAGATAGAGGGAAGAACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATATTGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGA
GTATGATTTCCCACATCAACCAAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTTTTC
AATTATTCTGTTGTTCTCATATCCATTGACCTAATTCTTCTGTTGTTCTGGCATCCATTGACCTAATTTTGCTGGCCCAAGCCTCCG
Intron 3 GTTTTAAGAA ... TAACGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.06 | 9 | 6 | 10 |
| A2 | 36.36 | 14 | 8 | 8 |
| A3 | 35.38 | 21 | 16 | 7 |
| A4 | 48.15 | 7 | 9 | 4 |
| A5 | 47.37 | 10 | 4 | 14 |
| A6 | 47.54 | 16 | 15 | 14 |
| A7 | 40.28 | 43 | 39 | 19 |
| A8 | 37.68 | 43 | 26 | 26 |
| A9 | 39.39 | 30 | 20 | 19 |
| A10 | 37.35 | 52 | 27 | 35 |
>TRINITY_DN47845_c0_g1_i17 from sample A10 / Example spliced isoformCGGGGCAGGTAGAAAGAGGCAATGGTGTATTATAGGCCTAGAACGGGGCAGGTAGAAAACTGCTAGTAGACAGTCACGTTCAGGTATTTCAGGGCACTTAACACTGCTTTAATGGTCACCTGGAAACCTGCATTTCCTCCACCTGTTGATTGATGTAGCACCTGCATGTACTTCCGCTATTGACAAGAAGGCTTGAGAGC
AAGCCAGGAATTTCAGGGCACTTAACACTGCTTTAATTGCCACCTGGAAACTTGCATTTCCTCTACCTATTGATGATCTACCACCTGCATGTACTCCAGTTATTGACAGGAAGGCCTAAGAGCAAACGCTGCAAGGTCCGGGTATAACAAGTTTTCAAAGGCTTGAAGGTTGGAAAGGCTTGATGGTTGAAATCTTTCGA
GAGACAATAGCTTCTATATACTGCAATTCGCGGTTCACAGGAACTCATGGGTTAAGACTCAAAGCGGTGACATTGCATCCATTTTCATCCCATTTCGGTCATTGGAAACCATTTGGATACCTTAATCGCCAGCAGAATTTTATATTGACGATCGCTGGTTGTCTGGATGTGGAGAGTATGCCCGGAGCCTGGTGCTGTTC
TTAAAAAACCTGTTGGGGTCATCTACAACGATGGAATTAACAACTCAGATTATATTGATGGTTTCCAAAAAGAGCAGTCTGAAATTAAGGAAAAGATACAGTCAGAACGGAAGGAAAATGATGGAGAAAGCATTTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCA
CATTGCAGCCCTCCAATCCAACAATCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAAGATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAGTAA
ACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGATTTCCCACATCAACCAAACTGAGATGGAGAACACTGAAA
>TRINITY_DN47845_c0_g1_i6 from sample A10 / Example unspliced isoform:CGGGGCAGGTAGAAAGAGGCAATGGTGTATTATAGGCCTAGAACGGGGCAGGTAGAAAACTGCTAGTAGACAGTCACGTTCAGGTATTTCAGGGCACTTAACACTGCTTTAATGGTCACCTGGAAACCTGCATTTCCTCCACCTGTTGATTGATGTAGCACCTGCATGTACTTCCGCTATTGACAAGAAGGCTTGAGAGC
AAGCCAGGAATTTCAGGGCACTTAACACTGCTTTAATTGCCACCTGGAAACTTGCATTTCCTCTACCTATTGATGATCTACCACCTGCATGTACTCCAGTTATTGACAGGAAGGCCTAAGAGCAAACGCTGCAAGGTCCGGGTATAACAAGTTTTCAAAGGCTTGAAGGTTGGAAAGGCTTGATGGTTGAAATCTTTCGA
GAGACAATAGCTTCTATATACTGCAATTCGCGGTTCACAGGAACTCATGGGTTAAGACTCAAAGCGGTGACATTGCATCCATTTTCATCCCATTTCGGTCATTGGAAACCATTTGGATACCTTAATCGCCAGCAGAATTTTATATTGACGATCGCTGGTTGTCTGGATGTGGAGAGTATGCCCGGAGCCTGGTGCTGTTC
TTAAAAAACCTGTTGGGGTCATCTACAACGATGGAATTAACAACTCAGATTATATTGATGGTTTCCAAAAAGAGCAGTCTGAAATTAAGGAAAAGATACAGTCAGAACGGAAGGAAAATGgttttaagaatatcattcaaattcaagaacattatgccatactcgaataaatccttggcttccgaggaaatatggaggca
tcgagatataaaagccacaattacttggtatacttggtatgtttataagcgagggtttgttttgctaaccactgacatctaaatatatatttgatattaaattatcacaattttctatacatacacaaatagatcttagttatatcatcttcattacctattatattaattgtttgaaacctattttaaaagtctagcct
gttagagtgaataaatgacagtgcagcacaacttcaaggtttttcgttattcttagcacttaacaggtttttcatttatcttagcgcttaacagatagtatcctagcacttcatagacgtctagttaagatggatctctatatctttgataccctacctcctgatctagagcatagagcatctcacttcttcgagtagtt
cagtctatcataaaaagagacaagattacagcaatagaattcacaagcttggagagcagacttcaaaccaatgtaaacaaaaattttgtctccaaatcaagttacattaaaaagagacaagattagagcaatagaattcacaagtttggagagcagacttcaaaccaatgtaaacaaattttttgtctccaaatcaagtt
actttaccagtatgccaccttcagttatactgattatataatccaaaatggcactataagaaatttagaccttgctacgagtctcattcctaccctgctacgagtccttaagatgcctcactcaaaaccatccctttgcttaaaagcagcaagtcaagcattaggtcatggattatagtatccaaatactaacccaagcc
aagcaagaacttgataattgtcagggttcaaatcccactgtttcgggttggtaatcttatatattctagcttaaatacttcagggagggatgaacctgatggctgatagcaatacccacgggcccgctttcagccaccccgaattgaccttgtattcctatccacggaatgccacaacaaacttttaatctgttacgttc
cctgagttggagatggagactgaccgtcatgagaagtttcaatgaatttgaacagttaaaagcaatttgcacatgattattggtgaattagtttatatgtgtttataacgaacagATGGAGAAAGCATTTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTG
CAGCCCTCCAATCCAACAATCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAAGATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAATGAAGCTT
GCAAGATAGAGGGAAGAACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATATTGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGGTTTCCCACATCAACTGAGATGGAGAACACTGA
AAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTATGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTTTTCAATTATTCTGTTGTTCTCATATCCATTGACCTAATTTTTCTGT
TGTTCTGGCATCCATTGACCTAATTTTGCTGGCCCAAGCCTCC
Intron 4 GTAAGTCTAC ... TTTATCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.11 | 80 | 9 | 0 |
| A2 | 26.92 | 38 | 14 | 0 |
| A3 | 15.79 | 48 | 9 | 0 |
| A4 | 17.65 | 56 | 12 | 0 |
| A5 | 26.92 | 19 | 7 | 0 |
| A6 | 17.56 | 108 | 23 | 1 |
| A7 | 22.43 | 211 | 61 | 0 |
| A8 | 16.92 | 167 | 34 | 0 |
| A9 | 20.65 | 196 | 51 | 0 |
| A10 | 17.61 | 131 | 28 | 0 |
>TRINITY_DN43958_c0_g1_i5 from sample A8 / Example spliced isoformGCCTAGAACGGGGCAGGTAGAAAGAGGCAATGGTGTATTATAGGCCTAGAACGGGGCAGGTAGAAAGAGGCAATGGTGTATTATAGGCCTAGAACGGGGCAGGTAGAAAACTGCTAGTAGACAGTCACGTTCAGGTATTTCAGGGCACTTAACACTGCTTTAATGGTCACCTGGAAACCTGCATTTCCTCCACCTGTTGA
TTGATGTAGCACCTGCATGTACTTCCGCTATTGACAAGAAGGCTTGAGAGCAAGCCAGGAATTTCAGGGCACTTAACACTGCTTTAATTGCCACCTGGAAACTTGCATTTCCTCTACCTATTGATGATGTACCTGATGTACCACCTGCATGTACTCCCGTTATTGACAGGAAGGCTTAAGAGCAAACGCTGCAAGGTCCG
GGTATAACAAGTTTTCAAAGGCTTGAAGGTTGGAAAGGCTTGATGGTTGAAATCTTTCGAGAGACAATAGCTTCTATATACTGCAATTCGCGGTTCACAGGAACTCATGGGTTAAGACTCAAAGCGGTGACATTGCATCCATTTTCATCCCATTTCGGTCATTGGAAACCATTTGGATACCTTAATCGCCAGCAGAATTT
TATATTGACGATCGCTGGTTGTCTGGATGTGGAGAGTATGCCCGGAGCCTGGTGCTGTTCTTAAAAAACCTGTTGGGGTCATCTACAAGGATGGAATTAACAGCTCAGTTTATATTGATGGTTTCCAAACAGAGCATTCTGAAATTAAGGAAAAGATACAGTCTGAACGGAAGGAAAATGAATTCAAACCTGAGATATCT
GTCTTGGAACACGGAGATAAAAGAACAGAGACGATTGTCAATTCTGCTTCTGAAGGAAAGGATCAAGTAAAACTTGAATTGCGGAGCACTCTAAGTACTCCAAAAATAAGTGCAATAGAGTCTCAGAAAATGCAAATTGAGAGGCAAAAAAGTCAGAAATTAATACCAGATACTCATGTCCGACAGATGCGTGATCAGAA
AATTATCCCAGATGCTCATGTACGACAGATGCGTGATCAGATGATTAGAGCTAAAGCATACTTGAACCTTGCACCAGCTCGCAATAATGCTCCCATTGTAAGAGAATTGCGGCAACGGATTAGAGATGTCCGCCGAGCCTTAGGTGAAGCAACTAAGGATACTGAACTTTCAAGAAGAGCTCCTGAGAGAATAAGATCCA
TGGAGAGCACTCTTTTTAAAGCCAACAAGCTTTTCAACGACTGTTCTGCTATGGTTAAGAAGCTTCGAGCTATGATGCACTCTACAGAAGAACAACTTCGAGTGCACAAGACACAGAGTAAATTTTTGACACAGCTTGCTGCTAGAAGCTTTCCTAAAGGTCTTCATTGTCTACCAGTGCGCTTGACTACTGAGTACTAT
GCATTGAGTCCAAACGAACAGGAATTTCCAAACAAAGGGAAGTTGGATGATCCAAGCCTTTACCACCATGCGATATTTTCTGACAATATACTTGCAGCAGCAGTTGTTGTGAACTCTACTGTATTTCATTCTAAGGAAACAGAAAAAGTTGTGTTTCACCTAGTTACTGACAAGTTAAACTATGCGGCCATGCGAATGTG
GTTTTTAGCAAATCCTCCTGGTAATGCTACAATTCAAGTTCAGAATATTGATGAATTCACATGGCTGAATTCCAATTATTTTCCAATTTTGAAGCAACTTGGGTCTGCATCTATGAAAGAGTATTATCAAAAGTCACAGTATATGAGCCCAGATGGAGGATCTTCTAACATGAGGTATCGAAATCCAAAGTATATGGATA
TGCTTAATCACCTTCGCTTCTACCTGCCAGAGGTTTTTCCAAAGCTCAATAAGGTCCTTTTTTTTAGATGATGATGTTGTAGTGCAAAAGGATTTGACTGCTCTTTGGGGGATTGATTTGCATGGTAAGGTAAATGGTGCAGTGGAAACATGTGGAGAAACCTTCTATCGACTTTGTAAATATCTGAATTTCTCAAATCC
TCTTATTTTGAGGGACTTTGACCCAAATTCCTGTACATGGGCATATGGCATGAATATATTTGATTTGCAAGAATGGAAAAAGCAGGACATGACAGGGATCTACCATAAATGGCAAAACCTGAACAAGGACAGACAGCTGTGGAAGCTGGGCAGCCTGCCACTTGGGCTAATCACCTTTTACAACCTTACTTATGCACTAG
ATAAGTCTTGGCATGTTCTAGGCCTTGGTTATAATCCTATTGTTAGTCGGACAGATATTGCAAAGGCAGCAGTGATACATTACAATGGCAACATGAAACCATGGCTTGAAATTGGAATTGCAAAATACAAACAATATTGGACCAAGTATGTGAAATATGACCATATATTCTTGCAACAGTGCAACCTTGGAGAGTAGGTA
CATATGACAGTTTATTGTACATATGCCATTGGACCCCCGAGTACTCCCTATCATTGCTAGCCATAGGAATTGCGGCAATCATAATTGGAGTAGTTGAGCAGAGGTATCATTCTTTTGTTTCCATTGGTCAGAGACTTAGCGGGGTGGATTGAACAGTCTGAAAAAATCACCTAAGTAATAATTTCCTCTGCTCCACATTT
GGAGAAATGAGGAAATTCTCTATGTATTCTAATTGTTTCTCACAAGAAGATACATAGGCAACATGTTCTACTTCATTCTTTCACAAGGGAAGTATTGAGTTTTGTTGAGCACATGATTTGGCACAATAAATTGGTATGTCCTGAACATCTTGTTTATAGGAAGTTTCTTTCAGTAATTCATTATCTTAAGTTTCTTTCAG
TAAGTTAATATCCCAAGTTGGTATATCCTTAAACTTCTTACTTAGAGAATGTTTCTTTTAGTCAGTTGATAATTGACATTCATAATTTTTCTGTATTGAAGATATATGTGCATTATAGAGTTGGGCTCTTGGGGTTCTAGTGATGTAATGTTGAATGGAGCATCTTTATCCC
>TRINITY_DN43958_c0_g1_i9 from sample A8 / Example unspliced isoform:TGTAAATATCTGAATTTCTCAAATCCTCTTATTTTGAGGGACTTTGACCCAAATTCCTGTACATGGGCATATGGCATGAATATATTTGATTTGCAAGAATGGAAAAAGCAGGACATGACAGGGATCTACCATAAATGGCAAAACCTGgtaagtctacattgacattttgcttttagtttcctggtgctttatttgtggtt
tctgcaatgaagtgacatgagcatttggttttgtctaaaactgactgttgtgtgatgctttttatcttagAACAAGGACAGACAGCTGTGGA
Intron 5 GTATGTTTAT ... TAACGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.09 | 6 | 21 | 10 |
| A2 | 76.92 | 3 | 12 | 8 |
| A3 | 70 | 3 | 7 | 7 |
| A4 | 50 | 7 | 10 | 4 |
| A5 | 63.16 | 7 | 10 | 14 |
| A6 | 55 | 9 | 8 | 14 |
| A7 | 38.82 | 26 | 13 | 20 |
| A8 | 61.19 | 13 | 15 | 26 |
| A9 | 33.33 | 27 | 8 | 19 |
| A10 | 40.95 | 31 | 8 | 35 |
>TRINITY_DN43642_c0_g1_i13 from sample A9 / Example spliced isoformCTTCGTCTCATCAGCTTCGGCATCTTTTTCTTCTTCTTATGTTCTGGTTCTAAGAATATCATTCAAATTCAAGAACATTATGCCATGCCCGAAGGAATCCTTGGCTTCGGAGGAAATATGGAGGCATCGAGATATAAAAGCCACAATTACTTGGTATACTTGATGGAGAAAGCATCTATCGTGAAGGACGCAATGACATA
TATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACAATCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAACATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCAC
CGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAATGAAGCTTGCAAGATAGAGGGAAGAACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATATTGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGC
TGCTTCTGAGTATGGTTTCCCACATCAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGT
TTTCAATTATTCTGTTGTTCTCATATCCATTGACCG
>TRINITY_DN43642_c0_g1_i6 from sample A9 / Example unspliced isoform:GGAACTATGGTTTTTTTAAATCGTTAGTTTTGCACTGCTGACTATTCTTTCTACAGGTTCTAAGAATATCATTCAAATTCAAGAACATTATGCCATGCCCGAAGGAATCCTTGGCTTCGGAGGAAATATGGAGGCATCGAGATATAAAAGCCACAATTACTTGGTATACTTGgtatgtttataagcgagggtttgttttg
ctaaccactgacatctaaatatatatttgatattaaattatcacaattttctatacatacacaaatagatcttagttatatcatcttcattacctattatattaattgtttgaaacctattttaaaagtctagcctgttagagtgaataaatgacagtgcagcacaacttcaaggtttttcgttattcttagcacttaac
aggtttttcatttatcttagcgcttaacagatagtatcctagcacttcatagacgtctagttaagatggatctctatatctttgataccctacctcctgatctagagcatagagcatctcacttcttcgagtagttcagtctatcataaaaagagacaagattagagcaatagaattcagaagtttggagagcagacttc
aaaccaatgtaaacaaaaattttgtctccaaatcaagttacattaaaaagagacaagattagagcaatagaattcagaagtttggagagcagacttcaaaccaatgtaaacaaattttttgtctccaaatcaagttactttaccagtatgccaccttcagttatactgattatataatccaaaatggcactataagaaat
ttagaccttgctacgagtctcattcctaccctgctacgagtccttaagatgcctcactcaaaaccatccctttgcttaaaagcagcaagtcaagcattaggtcatggattatagtatccaaatactaacccaagccaagcaagaacttgataattgtcagggttcaaatcccactgtttcgggttggtaatcttatatat
tctagcttaaatacttcagggagggatgaacctgatggctgatagcaatacccacgggcccgctttcagccaccccgaattgaccttgtattcctatccacggaatgccacaacaaacttttaatctgttacgttccctgagttggagatggagactgaccgtcatgagaagtttcaatgaatttgaacagttaaaagca
atttgcacatgattattggtgaattagtttatatgtgtttataacgaacagATGGAGAAAGCATCTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACAATCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGA
CTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAACATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAAATGAAGCTTGCAAGATAGAGGGAAGAACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATAT
TGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGGTTTCCCACATCAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAAA
TGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTTTTCAATTATTCTGTTGTTCTCATATCCATTGACCG
Intron 6 GTATGTTTAT ... CGCTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.97 | 9 | 20 | 11 |
| A2 | 62.86 | 13 | 22 | 7 |
| A3 | 60 | 6 | 9 | 3 |
| A4 | 63.16 | 7 | 12 | 6 |
| A5 | 84.62 | 2 | 11 | 7 |
| A6 | 41.07 | 66 | 46 | 8 |
| A7 | 36.94 | 70 | 41 | 12 |
| A8 | 38.94 | 69 | 44 | 16 |
| A9 | 40.18 | 67 | 45 | 12 |
| A10 | 40.43 | 56 | 38 | 11 |
>TRINITY_DN119953_c2_g1_i1 from sample A2 / Example spliced isoformTCGGAAGGCAGTCCATTCGCGTTGCAGGGTTTTGGACGCGGCGACATTTCTGTGAGTCCAGGTTCTAAGAATATCATTCAAATTCAAGAACATTATGCCATGCCCGAAGGAATCCTTGGCTTCGGAGGAAATATGGAGGCATCGAGATATAAAAGCTCGCAAATTACTCGGTTTTTCATCGATCCCAGCACTTCATAGAC
GTCTAGTTAAGATGGATCAAAATATCTTTGATACCCTACCTCCTGATCTAGAGCATAGAGCATCTCACTTCTTTGAGTATTGCAGTCTATCATAAAAAGAGACAAGATTAGAGCAATAGAATTTACAAGCTTGGAGAGCAGACTTCAAACCAATGTAAACAAATTTTTTGTCTCCAAATCAAGTTACTTTACCAGTATGC
CACCTTCAGTTATACTGATTATAATCCAAAATGGCACTATAAGAAATTTAGACCTTGCTACGAGTCTCACTCCTACCCTGCTACGAGTCCTTAAGATGCCTCACTCAAAACCATCCCTTTGCTTAAAAGCAGCAAGTCAAGCATTAGGTCATGGATTATAGTATCCAAATACTAACCCAAGCCAAGCAAGAACTTGATAA
TTGTCAGGGTTCAAATCCCACTGATTCGGGTTGGTAATCTTATATATTCTAGCTTAAATACTTCAGGGAGGGATGAACCTGATGGCTGATAGCAATACCCACGGGCCCGCTTTCAGCCACCCCGAATTGACCTTGTATTCATATCCACGGAATGCCACAACAAACTTTTAATCTGTTACGTTCCCTGAGTTGGAGATGGA
GACTGACCGTCATGAGAAGTTTCAATGAATTTGAACAGTTAAAAGCAATTTGCACATGATTATTGGTGAATTAGTTTATATGTGTTTATAACGAACAGATGGAGAAAGCATCTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTGAAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAAC
AATCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAAGATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCAATCAGTTCTTCAATTGAAGCTTGCAAGATAGAGGGAAGA
ACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATATTGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGATTTCCCACATCAACCAAACTGAGATGGAGAACACTGAAAATAATATAAT
TGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTT
>TRINITY_DN119953_c2_g1_i2 from sample A2 / Example unspliced isoform:TCGGAAGGCAGTCCATTCGCGTTGCAGGGTTTTGGACGCGGCGACATTTCTGTGAGTCCAGGTTCTAAGAATATCATTCAAATTCAAGAACATTATGCCATGCCCGAAGGAATCCTTGGCTTCGGAGGAAATATGGAGGCATCGAGATATAAAAGCTCGCAAATTACTCGgtatgtttataagcgagggtttgttttgct
aaccactgacatctaaatatatatttgatattaggttatcacaattttctatacatacacaaatagatcctagttatatcatcttcatttaactcagcacctattatattgatggtttgaaacgtattttaaaagtctagcttgttagagtgaataaatcaccgtgcagcaccacttcaaggtttttccttattctcagc
gcttaacagGTTTTTCATCGATCCCAGCACTTCATAGACGTCTAGTTAAGATGGATCAAAATATCTTTGATACCCTACCTCCTGATCTAGAGCATAGAGCATCTCACTTCTTTGAGTATTGCAGTCTATCATAAAAAGAGACAAGATTAGAGCAATAGAATTTACAAGCTTGGAGAGCAGACTTCAAACCAATGTAAACA
AATTTTTTGTCTCCAAATCAAGTTACTTTACCAGTATGCCACCTTCAGTTATACTGATTATAATCCAAAATGGCACTATAAGAAATTTAGACCTTGCTACGAGTCTCACTCCTACCCTGCTACGAGTCCTTAAGATGCCTCACTCAAAACCATCCCTTTGCTTAAAAGCAGCAAGTCAAGCATTAGGTCATGGATTATAG
TATCCAAATACTAACCCAAGCCAAGCAAGAACTTGATAATTGTCAGGGTTCAAATCCCACTGATTCGGGTTGGTAATCTTATATATTCTAGCTTAAATACTTCAGGGAGGGATGAACCTGATGGCTGATAGCAATACCCACGGGCCCGCTTTCAGCCACCCCGAATTGACCTTGTATTCATATCCACGGAATGCCACAAC
AAACTTTTAATCTGTTACGTTCCCTGAGTTGGAGATGGAGACTGACCGTCATGAGAAGTTTCAATGAATTTGAACAGTTAAAAGCAATTTGCACATGATTATTGGTGAATTAGTTTATATGTGTTTATAACGAACAGATGGAGAAAGCATCTATCGTGAAGGACGCAATGACATATATACAACACTTGCAAAATCAAGTG
AAGGAGATTGAGTGTCACATTGCAGCCCTCCAATCCAACAATCTGCAAAGAGACTGCTCTTCTTCATCCATTGTATCTGACAACGACTCTTCTATTGGTATGAGAGACATGAATGCCCTGCAAATACATAAAGATCTTTACCATCCCGAAACTGCCGGTGCCCATCCTATGCCACCGGCCAGAAGCATACATGCAGCTCA
ATCAGTTCTTCAATTGAAGCTTGCAAGATAGAGGGAAGAACATTCAGTACAGATGACGAAGGCCCTGGATCAGTCTATTCAAATATTGGAAATTAAAAGTTCGAAAGTATGTGCAGGTAAACGAGGGAGCAGAATCTATAGAAGCGGATGGATTAAAACAAATGATCCTCCACGCTGCTTCTGAGTATGATTTCCCACAT
CAACCAAACTGAGATGGAGAACACTGAAAATAATATAATTGTACGTTGAATTTGGATTGGCCTCAACCATTCTCTGAAGGATATGCTTAAATGCTCCCTGGAATACTCCGTATTGGATCTGAATGGTACTTTTAAAACTGGTGTGGCAGGGTTTTTTCAATGCTAAGGAGAAGTTTCGGTT