sp|Q9SA32|CCB31_ARATH ----> Putative cyclin-B3-1
Intron 1 GTAAGCAGGG ... GTCTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.25 | 161.2 | 46 | 19.7 |
| A2 | 16.1 | 114.7 | 22 | 13.1 |
| A3 | 23.4 | 162.9 | 49.6 | 20.9 |
| A4 | 25 | 93.1 | 31 | 11.6 |
| A5 | 16.17 | 93.5 | 18 | 13.1 |
| A6 | 18.73 | 152.1 | 35 | 18.5 |
| A7 | 18.6 | 355.3 | 81 | 41.1 |
| A8 | 13.5 | 165 | 25.7 | 12.3 |
| A9 | 15.67 | 389.5 | 72.3 | 39.5 |
| A10 | 14.52 | 456 | 77.4 | 50.9 |
>TRINITY_DN118285_c0_g1_i11 from sample A1 / Example spliced isoformTACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTG
ATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGACTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAA
TAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTG
TCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGA
TCAGCATTGGTTTCAAAATCAGGCACCGTCCATGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTA
AACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCA
AAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATG
CAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTT
TGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTGGTAAACATTGACAGGATGGGATGTCCATTTTTAAGCTGCAATTTTATATATATTGAGTTTTTAAAACTAAAATCTTGTTTTCTGTGCCCTTGATTTGGCATCTAGAGAATAAGGGCTTTACATTCTAACCTATTTTCTTTAAGGGCT
TTACAGGTCAAGGAATTGATTACAATA
>TRINITY_DN118285_c0_g1_i4 from sample A1 / Example unspliced isoform:TACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTG
ATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGACTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAA
TAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAgtaagcagggcttttctgtcattcctagaacatttttttaaattgtgaaacttcat
gttttatcagcacatagtgcaaacttaggttttataaaaagttttgattatgagcttagcctgtctggtcaagcgtttttctatttacttagctatatgcttattcaggcttcatgaaaaataatgttgtatgtgatgttgtgggtgtgtaattctgtctccacagGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAG
CAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATG
Intron 2 GTATGTACAT ... TGCCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.78 | 173 | 7 | 40 |
| A2 | 19.3 | 92 | 3.5 | 22 |
| A3 | 19.01 | 196 | 9 | 46 |
| A4 | 26.23 | 90 | 7 | 32 |
| A5 | 15.04 | 96 | 1.5 | 17 |
| A6 | 14.16 | 203 | 3.5 | 33.5 |
| A7 | 13.59 | 359 | 14 | 56.5 |
| A8 | 27.72 | 193 | 8 | 74 |
| A9 | 16 | 441 | 8.5 | 84 |
| A10 | 12.1 | 385 | 3 | 53 |
>TRINITY_DN43145_c0_g1_i4 from sample A7 / Example spliced isoformCTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGC
ATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGA
GCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACC
GGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAA
CAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAA
CATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAA
AAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCA
ACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTG
ACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGA
TAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTA
TGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATG
TCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGG
AGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAA
TTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAA
AGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCC
>TRINITY_DN43145_c0_g1_i12 from sample A7 / Example unspliced isoform:TGTGGGTGTGTAATTCTGTCTCCACAGGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGTAGATTCAGCCTCTCAATATGATTCCCTCATCTTTTGCAGGTATTTTGGGTGGTACCGATTAGAGTTAACAATTACAATTGGGTGTGTAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACA
ACAAGGCCATCATCCATGGTATGTGCATCATCTGTGGTTGTATAATTTGTTTGCGATTAAACAGCTGTCTGGATTTTCATGTATCAATTCCCATATGCTAGCAATTCAGTATCGGGTGAATGATTTGGCTCACTATTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTAACTGTATGTGGGATTGTTGAGGTCA
ATAATAGGGCTCTTTGCCTGCCTCATTAGTGGGATGTTTTACATGTACTTATTTTACTTCTGTGGGTTTTGTTTTGCTGCCATTTAGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAGGGCATCGTCCATGgtatgtacatcatctgtggttgtacaatt
tgtgtgtgattaaatggttgtctgaattatcatgtatctactcccagatgttagtaatgcagcatcaggtgaatgatttagttcaccactactgagatttataccttggcctctgtttcaaatgggtgactgtaagtgggaatgttgaggtcaataacatggctctttgcttgcctctgtttcaaatgggtgactgtaag
tgggaatgttgaggtcaataacatggctctttgcttgcctctttagtgggatggtttacatgtatttattttacttctatgggttttgttttgctgccattcagCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCT
GGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAA
ACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACA
TTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAG
ACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAA
ATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAAC
ATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCT
CTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGT
AAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGT
TTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTG
GGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAAAGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCC
Intron 3 GTATGCACCT ... TGTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.3 | 189 | 28 | 6.7 |
| A2 | 7.02 | 118 | 14 | 9.3 |
| A3 | 4.97 | 188 | 28.3 | 10 |
| A4 | 6.37 | 178 | 22.6 | 12.2 |
| A5 | 2.84 | 67.3 | 7.9 | 2 |
| A6 | 2.47 | 404 | 43.7 | 10.7 |
| A7 | 4.23 | 528.3 | 67.4 | 24.2 |
| A8 | 5.62 | 467.3 | 56.9 | 28.7 |
| A9 | 5.46 | 538.3 | 50.4 | 32.5 |
| A10 | 3.77 | 421 | 49.9 | 17.2 |
>TRINITY_DN107235_c0_g1_i9 from sample A3 / Example spliced isoformTTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCAT
ACAGCATACGGCATTTTTTTGTGACTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGA
CTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATG
CCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAA
AGGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAAGGCACGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACC
TGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCA
AACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAAC
ATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGA
GACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGA
AATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAA
CATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCC
TCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGG
TAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
>TRINITY_DN107235_c0_g1_i13 from sample A3 / Example unspliced isoform:TTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCAT
ACAGCATACGGCATTTTTTTGTGACTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGA
CTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATG
CCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAA
AGGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAAGGCACGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACC
TGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCA
AACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAAC
ATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGgtatgcaccttttgtcatgggagcttgcaaactttttttgttactatttgaaataacaacatcttgccttgataacatttgtttttactattttaaatttttattaaactggactgctg
ctgaagtgtcatttaaacaacttaatcagacacctggctgttcacagcatatagtatgctatgattacatgtgagcagtctgtgtctgtgtgcatacaagaatatcttcactggagaattaaagtccccgtttaagcatcaaggaaggttataatttatgaataaggaatttaggaattaatgcgaaccttaacccatgc
ctatagtgtagatagtagatacagatctgaataagcagttgtataaattgtttcttttatgtctgctgtgtttgttgtattgcagGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGC
ACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATG
GAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGC
ACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTT
CTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATA
AGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
Intron 4 GTATGTACAT ... TGCCATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.07 | 103 | 29 | 26 |
| A2 | 21.02 | 62 | 21 | 12 |
| A3 | 17.36 | 100 | 33 | 9 |
| A4 | 28 | 45 | 20 | 15 |
| A5 | 16.13 | 65 | 18 | 7 |
| A6 | 11.85 | 119 | 20 | 12 |
| A7 | 17.21 | 243 | 70 | 31 |
| A8 | 13.86 | 115 | 30 | 7 |
| A9 | 12.83 | 231 | 51 | 17 |
| A10 | 14.75 | 260 | 53 | 37 |
>TRINITY_DN41685_c0_g1_i11 from sample A8 / Example spliced isoformCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAG
TTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAAC
AAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAG
TGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAAT
CAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGTGATTAAATGGTTGTCTGAATTATCATGTATCTA
CTCCCAGATGTTAGTAATGCAGCATCAGGTGAATGATTTAGTTCACCACTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTGACTGTAAGTGGGAATGTTGAGGTCAATAACATGGCTCTTTGCTTGCCTCTTTAGTGGGATGGTTTACATGTATTTATTTTACTTCTATGGGTTTTGTTTTGCTGCCATTCAG
CCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAG
GATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTC
AAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAAC
TACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGC
TTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATT
TGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCAT
AAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTT
ACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAA
TTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCT
GCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAAAGTTAGGCTCTCAATAT
TGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCTCTCA
>TRINITY_DN41685_c0_g1_i7 from sample A8 / Example unspliced isoform:CACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAG
TTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAAC
AAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAG
TGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGgtatgtacatcatctgtggttgtacaatttgtgtgattaaatggctgtctgaattatcatgtat
caattcccagatgttagtaatgcaccacaggtgaatgatttggttcaccactactgagatttatgccttggcctctgtctcaaatgggaaagttaaggtcaataacagggctctttgtttgcctcattagtgggatgttttacatgtacatcatctgtggttgtacaatttgtgtgattaaatggctgtctgaattatca
tgtatcaattcccagatgttagtaatgcaccacaggtgaatgatttggttcaccactactgagatttatgccttggcgtctgtctcaaatgggaaagttaaggtcaataacagggctctttgtttgcctcattagtgggatgttttacatgtacttattttacttctgtgggttttgttttgctgccatttagCCACTGG
GGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGGTATGTACATCA
TCTGTGGTTGTACAATTTGTGTGTGATTAAATGGTTGTCTGAATTATCATGTATCTACTCCCAGATGTTAGTAATGCAGCATCAGGTGAATGATTTAGTTCACCACTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTGACTGTAAGTGGGAATGTTGAGGTCAATAACATGGCTCTTTGCTTGCCTCTTTAGT
GGGATGGTTTACATGTATTTATTTTACTTCTATGGGTTTTGTTTTGCTGCCATTCAGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGG
CAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTA
AGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTT
CAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGT
GTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCAT
TCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCAT
GCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTT
GTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTA
ATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTT
GACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATA
TTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAAAGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCTCTCA
Intron 5 GTTAGGAGCA ... AAATAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.35 | 100 | 18 | 30 |
| A2 | 13.25 | 72 | 7 | 15 |
| A3 | 21.74 | 81 | 21 | 24 |
| A4 | 18.29 | 67 | 6 | 24 |
| A5 | 20.79 | 40 | 7 | 14 |
| A6 | 18.42 | 124 | 14 | 42 |
| A7 | 18.75 | 208 | 37 | 59 |
| A8 | 21.52 | 167 | 33 | 58.6 |
| A9 | 20.52 | 266 | 51 | 86.3 |
| A10 | 20.55 | 203 | 54 | 51 |
>TRINITY_DN43145_c0_g1_i4 from sample A7 / Example spliced isoformCTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGC
ATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGA
GCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACC
GGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAA
CAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAA
CATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAA
AAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCA
ACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTG
ACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGA
TAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTA
TGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATG
TCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGG
AGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAA
TTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAA
AGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCC
>TRINITY_DN43145_c0_g1_i1 from sample A7 / Example unspliced isoform:TGTGGGTGTGTAATTCTGTCTCCACAGGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGTAGATTCAGCCTCTCAATATGATTCCCTCATCTTTTGCAGGTATTTTGGGTGGTACCGATTAGAGTTAACAATTACAATTGGGTGTGTAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACA
ACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAG
GGCATCGTCCATGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCA
CCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATG
CAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGgttaggagcatctggtccactggccttattttagcatgtgtagattgttttttta
ataaaatagttttagacttttcttttgcaagaacagtgaagggtttatctaatccatagctccatttgccatctaatggtttcaaataaacagCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCA
AGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGT
ACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTC
GTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGC
ACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGT
AGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAAT
TATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGA
CTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATT
GAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAAAGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCC
Intron 6 GTGAGATTTT ... TTTTCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.58 | 80.2 | 0.9 | 3.8 |
| A2 | 4.07 | 58.6 | 0.9 | 2.4 |
| A3 | 5.04 | 52.6 | 0 | 2 |
| A4 | 4.99 | 68.1 | 4.5 | 3.4 |
| A5 | 11.21 | 21.4 | 0 | 2.3 |
| A6 | 4.78 | 173.1 | 4.3 | 7.5 |
| A7 | 6.42 | 182.6 | 5.3 | 11.4 |
| A8 | 7.22 | 226.6 | 7.8 | 16.5 |
| A9 | 5.68 | 284.5 | 7.9 | 15.1 |
| A10 | 7.59 | 174.6 | 6 | 13.8 |
>TRINITY_DN43145_c0_g1_i4 from sample A7 / Example spliced isoformCTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGC
ATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGA
GCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACC
GGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAA
CAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAA
CATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAA
AAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCA
ACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTG
ACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGA
TAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTA
TGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATG
TCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGG
AGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAA
TTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAA
AGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCC
>TRINITY_DN43145_c0_g1_i13 from sample A7 / Example unspliced isoform:CTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGC
ATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGA
GCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACC
GGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAGGGCATCGTCCATGAAACAAAGAT
GAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACT
CTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCA
AGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAA
AATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAA
CCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTGGTAAACATTGACAGGATGGGATGTCCATTTTTAAGCTGCAATTTTATATATATTGAGTTTTTAAAACTAAAATCTTGTTTTC
TGTGCCCTTGATTTGGCATCTAGAGAATAAGGGCTTTACATTCTAACCTATTTTCTTTAAGGGCTTTACAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGgtgagattttgctttctcacattaatatctcataatgatacgtgtgccttgtgattctgccatattttt
ctaattgtgtaagtaattcaagtttgaaattgtttttgttgctcatgtttatggcatgtttcattttctttagGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGGTATTCTGTTTTGCTTAAAATTTGTTGA
ATATTCAAATGGCATTGGGCCCCACTATGTTATGACATGCATTCAATTTTCGATGTGTTGGATGACAGACATCATGCACCATTTTGTTCTAACTATAAGCTTTCATAAATGAGGTCTTTATAAAATTAATGCTCTTTTGGGTGTGTTTCCATGGATCAG
Intron 7 GTATGTACAT ... TGCCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.28 | 80 | 21 | 75 |
| A2 | 47.74 | 45 | 12 | 31 |
| A3 | 43.15 | 90.5 | 13 | 56 |
| A4 | 64.09 | 35.5 | 7 | 47 |
| A5 | 57.98 | 33.5 | 3 | 28 |
| A6 | 46.14 | 80.5 | 16 | 51 |
| A7 | 41.19 | 149.5 | 30 | 63 |
| A8 | 56.98 | 78 | 16 | 74 |
| A9 | 40.65 | 190.5 | 27 | 103 |
| A10 | 45.58 | 157.5 | 29 | 87 |
>TRINITY_DN101182_c0_g1_i14 from sample A4 / Example spliced isoformATTTGCATGATATAAAATATGGTTCGGTCATTTTTTTAAATACATGGGATGACCCACTCCCTACTAACCGTTCACGGGACCCCGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGA
AGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTT
GTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAG
CCAGAGTAAGCAGGGCTTTTCTGTCATTCCTAGAACATTTTTTTAAATTGTGAAACTTCATGTTTTATCAGCACATAGTACAAACTTAGGTTTTATAAAAAGTTTTGATTATGAGCTTAGCCTGTCTGGTCAAGCGTTTTTCTATTTACTTAGCTATATGCTTATTCAGGCTTCATGAAAAATAATGTTGTATGTGATGT
TGTGGGTGTGTAATTCTGTCTCCACAGGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGTAGATTCAGCCTCTCAATATGATTCCCTCATCTTTTGCAGGTATTTTGGGTGGTACCGATTAGAGTTAACAATTACAATTGGGTGTGTAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACA
ACAAGGCCATCATCCATGGTATGTGCATCATCTGTGGTTGTATAATTTGTTTGCGATTAAACAGCTGTCTGGATTTTCATGTATCAATTCCCATATGCTAGCAATTCAGTATCGGGTGAATGATTTGGCTCACTATACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGAT
CAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTAACTGTATGTGGGATTGTTGAGGTCAATAATAGGGCTCTTTGCCTGCCTCATTAGTGGGATG
TTTTACATATATTTATTTTACTTGGGTTTTGTTTTGCTGCCATTCAGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATG
AGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGA
ATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCC
CACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTA
GTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATT
TCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTG
TACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTG
CTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTG
TTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCT
GTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTA
>TRINITY_DN101182_c0_g1_i14 from sample A4 / Example unspliced isoform:ATTTGCATGATATAAAATATGGTTCGGTCATTTTTTTAAATACATGGGATGACCCACTCCCTACTAACCGTTCACGGGACCCCGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGA
AGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTT
GTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAG
CCAGAGTAAGCAGGGCTTTTCTGTCATTCCTAGAACATTTTTTTAAATTGTGAAACTTCATGTTTTATCAGCACATAGTACAAACTTAGGTTTTATAAAAAGTTTTGATTATGAGCTTAGCCTGTCTGGTCAAGCGTTTTTCTATTTACTTAGCTATATGCTTATTCAGGCTTCATGAAAAATAATGTTGTATGTGATGT
TGTGGGTGTGTAATTCTGTCTCCACAGGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGTAGATTCAGCCTCTCAATATGATTCCCTCATCTTTTGCAGGTATTTTGGGTGGTACCGATTAGAGTTAACAATTACAATTGGGTGTGTAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACA
ACAAGGCCATCATCCATGGTATGTGCATCATCTGTGGTTGTATAATTTGTTTGCGATTAAACAGCTGTCTGGATTTTCATGTATCAATTCCCATATGCTAGCAATTCAGTATCGGGTGAATGATTTGGCTCACTATACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGAT
CAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGgtatgtacatcatctgtggttgtacaatttgtgtgtactgagatttataccttggcctctgtttcaaatgggtaactgtatgtgggattgttgaggtcaataatagggctctttgcctgcctcattagtgggatg
ttttacatatatttattttacttgggttttgttttgctgccattcagCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATG
AGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGA
ATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCC
CACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTA
GTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATT
TCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTG
TACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTG
CTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTG
TTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCT
GTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTA
Intron 8 GTATGTACAT ... TGCCATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.28 | 97.3 | 17.5 | 14.7 |
| A2 | 13.91 | 56.7 | 9.3 | 4 |
| A3 | 12.32 | 102.7 | 14.7 | 0 |
| A4 | 23.18 | 46 | 13.3 | 9.8 |
| A5 | 8.41 | 65.2 | 6.7 | 2.8 |
| A6 | 2.13 | 110.2 | 3.5 | 6 |
| A7 | 14.34 | 242.3 | 40.8 | 10 |
| A8 | 11.42 | 114.3 | 15 | 2.7 |
| A9 | 8.13 | 231.2 | 21 | 1 |
| A10 | 5.49 | 250 | 16.3 | 3 |
>TRINITY_DN118285_c0_g1_i11 from sample A1 / Example spliced isoformTACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTG
ATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGACTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAA
TAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTG
TCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGA
TCAGCATTGGTTTCAAAATCAGGCACCGTCCATGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTA
AACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCA
AAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATG
CAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTT
TGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTGGTAAACATTGACAGGATGGGATGTCCATTTTTAAGCTGCAATTTTATATATATTGAGTTTTTAAAACTAAAATCTTGTTTTCTGTGCCCTTGATTTGGCATCTAGAGAATAAGGGCTTTACATTCTAACCTATTTTCTTTAAGGGCT
TTACAGGTCAAGGAATTGATTACAATA
>TRINITY_DN118285_c0_g1_i5 from sample A1 / Example unspliced isoform:CGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGgtatgtacatcatctgtggttgtacaatttgtgtgattaaatggctgtctgaattatcatgtatcaattcccagatgttagtaatgcaccaca
ggtgaatgatttggttcaccactactgagatttatgccttggcgtctgtctcaaatgggaaagttaaggtcaataacagggctctttgtttgcctcattagtgggatgttttacatgtacttattttacttctgtgggttttgttttgctgccatttagCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCAT
GAGATCAGCATTGGTTTCAAAATCAACAAAGGCACCGTCCATGGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGTGATTAAATGGTTGTCTGAATTATCATGTATCTACTCCCAGATGTTAGTAATGCAGCATCAGGTGAATGATTTAGTTCACCACTACTGAGATTTATACCTTGGCCTCT
GTTTCAAATGGGTGACTGTAAGTGGGAATGTTGAGGTCAATAACATGGCTCTTTGCTTGCCTCTTTAGTGGGATGGTTTACATGTATTTATTTTACTTCTATGGGTTTTGTTTTGCTGCCATTCAGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGT
ACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTT
CAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAA
GAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCT
AAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTG
ATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCC
TCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAA
GCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTA
TTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
Intron 9 GTAAATCTTG ... CTTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.83 | 63 | 13 | 3 |
| A2 | 20.56 | 46 | 12.1 | 1.9 |
| A3 | 17.76 | 59 | 13 | 2.2 |
| A4 | 11.57 | 49 | 6.5 | 3 |
| A5 | 14.47 | 27 | 4.6 | 1.9 |
| A6 | 15.49 | 354 | 65.8 | 22.6 |
| A7 | 22.41 | 209.3 | 61.9 | 11.7 |
| A8 | 20.41 | 358 | 93.7 | 19.4 |
| A9 | 18.67 | 368 | 86 | 21.1 |
| A10 | 17.92 | 200 | 44.4 | 10.5 |
>TRINITY_DN111424_c0_g1_i12 from sample A2 / Example spliced isoformATTCAGTATCGGGTGAATGATTTGGCTCACTATTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTAACTGTATGTGGGATTGTTGAGGTCAATAATAGGGCTCTTTGCCTGCCTCATTAGTGGGATGTTTTACATGTACTTATTTTACTTCTGTGGGTTTTGTTTTGCTGCCATTTAATGTACCAGATTTAGCA
AAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATC
CAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCAC
CGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGT
GTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGA
TGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTT
ACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATG
CTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGG
TGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGA
ATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAA
TTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCC
>TRINITY_DN111424_c0_g1_i2 from sample A2 / Example unspliced isoform:CGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTG
TGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTA
GAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAAC
AAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCAT
GCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAA
GGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTT
CAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAA
CTACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTG
CTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGAT
TTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAgtaaatcttgaatatcctttctgtctttta
catcctagtatttcctacttaatgtgtattcaagtacagcatctgaaattattttctggtgcatgcagacatgctagaattaaatgcattctttttatgcagaaagttcctgaatttcttgtcatttgggtttatatgatttgaatctcttatttataaaagagggtttgaatgtttgattttctttgtgcagGGAATGT
GCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTA
AATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATG
TCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAA
ACTACATATGCAAGATAGAGCCC
Intron 10 GTACTCAATT ... GCACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.43 | 68.8 | 0 | 33 |
| A2 | 36.44 | 69.8 | 2.8 | 40 |
| A3 | 32.38 | 64.7 | 1 | 31 |
| A4 | 32.18 | 65.4 | 1.8 | 31 |
| A5 | 35.9 | 33.9 | 0 | 19 |
| A6 | 34.43 | 205.6 | 0 | 108 |
| A7 | 35.09 | 238.6 | 2.7 | 129 |
| A8 | 33.04 | 212.6 | 5.3 | 104.9 |
| A9 | 33.94 | 239.4 | 5.8 | 123 |
| A10 | 37.46 | 168.6 | 3 | 101 |
>TRINITY_DN43145_c0_g1_i4 from sample A7 / Example spliced isoformCTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGC
ATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGA
GCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACC
GGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAA
CAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAA
CATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAA
AAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCA
ACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTG
ACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGA
TAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTA
TGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATG
TCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGG
AGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAA
TTTCCGTAGAGTGGGCTGCACATCTATTGTGTTTGGAGCGGATTCAATTGTAATTATTGCAATAATTTTGTTGCACATCTATTATTTTGAAAAGCCCTTTTCTGAGATATTTGGGGGTGATGTTTCAGGGTTTCAAAGAATTTGGGAAACAAAGTAAATATTGAATAGAAGGCAAAACTACATATGCAAGATAGAGCCAA
AGTTAGGCTCTCAATATTGAATAAGGCATACAAACCTCCATATGGAAAGATAGAGACCAAGTTAAGCC
>TRINITY_DN43145_c0_g1_i16 from sample A7 / Example unspliced isoform:CCATTTCTATTGGTATACAGAGGTATGCACCTTTTGTCATGGGAGCTTGCAAACTTTTTTTGTTACTATTTGAAATAACAACATCTTGCCTTGATAACATTTGTTTTTACTATTTTAAATTTTTATTAAACTGGACTGCTGCTGAAGTGTCATTTAAACAACTTAATCAGACACCTGGCTGTTCACAGCATATAGTATGC
TATGATTACATGTGAGCAGTCTGTGTCTGTGTGCATACAAGAATATCTTCACTGGAGAATTAAAGTCCCCGTTTAAGCATCAAGGAAGGTTATAATTTATGAATAAGGAATTTAGGAATTAATGCGAACCTTAACCCATGCCTATAGTGTAGATAGTAGATACAGATCTGAATAAGCAGTTGTATAAATTGTTTCTTTTA
TGTCTGCTGTGTTTGTTGTATTGCAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATgtactcaattaaaactttcaatgtctatctgtttctgtaataagcattttctgtttctgttataatttcctgacatagaaaatt
tgcacttgcagGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTGGTAAACATTGACAGGATGGGA
TGTCCATTTTTAAGCTGCAATTTTATATATATTGAGTTTTTAAAACTAAAATCTTGTTTTCTGTGCCCTTGATTTGGCATCTAGAGAATAAGGGCTTTACATTCTAACCTATTTTCTTTAAGGGCTTTACAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGG
Intron 11 GTAGATTCAG ... GGGTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.58 | 146 | 15.2 | 21.4 |
| A2 | 10.16 | 118 | 6.4 | 14.1 |
| A3 | 13.98 | 156 | 8.3 | 26.8 |
| A4 | 15.76 | 84 | 8.1 | 16.4 |
| A5 | 10.04 | 87 | 4.9 | 9.8 |
| A6 | 6.98 | 146 | 2.9 | 11.7 |
| A7 | 8.57 | 325 | 15.9 | 32.4 |
| A8 | 6.52 | 158 | 6.9 | 11.7 |
| A9 | 9.42 | 372 | 13.6 | 40.7 |
| A10 | 8.63 | 469 | 16.1 | 47.6 |
>TRINITY_DN101182_c0_g1_i2 from sample A4 / Example spliced isoformATTTGCATGATATAAAATATGGTTCGGTCATTTTTTTAAATACATGGGATGACCCACTCCCTACTAACCGTTCACGGGACCCCGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGA
AGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTT
GTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAG
CCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAAC
AAAGGCACCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGATTAAATGGCTGTCTGAATTATCATGTATCAATTCCCAGATGTTAGTAATGCACCACAGGTGAATGATTTGGTTCACCACTACTGAGATTTATGCCTTGGCGTCTGTCTCAAATGGGAAAGTTAAGGTCAATAACAGGGCTCTTTGTTT
GCCTCATTAGTGGGATGTTTTACATGTACTTATTTTACTTCTGTGGGTTTTGTTTTGCTGCCATTTAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAG
ATCAGCATTGGTTTCAAAATCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTT
CTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGA
ATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTT
CTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAA
AGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGG
TTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATC
AGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAAC
ATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTT
GACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTA
>TRINITY_DN101182_c0_g1_i14 from sample A4 / Example unspliced isoform:ATTTGCATGATATAAAATATGGTTCGGTCATTTTTTTAAATACATGGGATGACCCACTCCCTACTAACCGTTCACGGGACCCCGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGA
AGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTT
GTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAG
CCAGAGTAAGCAGGGCTTTTCTGTCATTCCTAGAACATTTTTTTAAATTGTGAAACTTCATGTTTTATCAGCACATAGTACAAACTTAGGTTTTATAAAAAGTTTTGATTATGAGCTTAGCCTGTCTGGTCAAGCGTTTTTCTATTTACTTAGCTATATGCTTATTCAGGCTTCATGAAAAATAATGTTGTATGTGATGT
TGTGGGTGTGTAATTCTGTCTCCACAGGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGgtagattcagcctctcaatatgattccctcatcttttgcaggtattttgggtggtaccgattagagttaacaattacaattgggtgtgtagGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACA
ACAAGGCCATCATCCATGGTATGTGCATCATCTGTGGTTGTATAATTTGTTTGCGATTAAACAGCTGTCTGGATTTTCATGTATCAATTCCCATATGCTAGCAATTCAGTATCGGGTGAATGATTTGGCTCACTATACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGAT
CAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTAACTGTATGTGGGATTGTTGAGGTCAATAATAGGGCTCTTTGCCTGCCTCATTAGTGGGATG
TTTTACATATATTTATTTTACTTGGGTTTTGTTTTGCTGCCATTCAGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATG
AGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGA
ATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCC
CACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTA
GTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATT
TCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTG
TACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTG
CTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTG
TTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCT
GTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTA
Intron 12 GTATGCACCT ... TGTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.68 | 189 | 76 | 16 |
| A2 | 26.25 | 118 | 42 | 20 |
| A3 | 30.63 | 188 | 83 | 18 |
| A4 | 27.05 | 178 | 66 | 16 |
| A5 | 24.44 | 68 | 22 | 4 |
| A6 | 24.2 | 404 | 129 | 30 |
| A7 | 27.73 | 529 | 203 | 55 |
| A8 | 26.3 | 468 | 167 | 58 |
| A9 | 21.88 | 539 | 151 | 73 |
| A10 | 25.75 | 421 | 146 | 41 |
>TRINITY_DN45387_c0_g1_i9 from sample A10 / Example spliced isoformTCTGTGGTTGTACAATTTGTGTGTGATTAAATGGTTGTCTGAATTATCATGTATCTACTCCCAGATGTTAGTAATGCAGCATCAGGTGAATGATTTAGTTCACCACTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTGACTGTAAGTGGGAATGTTGAGGTCAATAACATGGCTCTTTGCTTGCCTCTTTAGT
GGGATGGTTTACATGTATTTATTTTACTTCTATGGGTTTTGTTTTGCTGCCATTCAGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGG
CAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTA
AGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTT
CAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGT
GTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTGGTAAACATTGACAGGATGGGATGTCCATTTTTAAGCTGCAATTTTATATATATTGAGTTTTTAAAACTAAAATCTTGTTTTCTGTGCCCTTGATTTGGCATCTAGAGAA
TAAGGGCTTTACATTCTAACCTATTTTCTTTAAGGGCTTTACAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAG
CAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAG
>TRINITY_DN45387_c0_g1_i7 from sample A10 / Example unspliced isoform:CTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGAT
ACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAA
GAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGgtatgcaccttttgtcatgggagcttg
caaaatttttttgttactatttgaaataacaacatcttgccttgataacatttgtttttactattttaaatttttattaaactggactgctgctgaagtgtcatttaaacaacttaatcagacacctggctgttcacagcatatagtcatgctatgattacatgtgagcagtctgtgtctgtgtgcatacaagaatatct
tcactggagaattaaagtccccgtttaagcatcaaggaaggttataatttatgaataaggaatttaggaattaatgcgaaccttaacccatgcctatagtgtagatagtagatacagatctgaataagcagttgtataaattgtttcttttatgtctgctgtgtttgttgtattgcagGCATGCAACTATCTGTCATCAA
ACTACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTT
GCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGT
Intron 13 GTATTCTGTT ... CATGGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.79 | 82 | 7.8 | 27.5 |
| A2 | 24.85 | 62 | 8.8 | 20.9 |
| A3 | 29.96 | 65 | 5.7 | 28.5 |
| A4 | 26.83 | 69 | 2.9 | 25.7 |
| A5 | 32.4 | 27 | 1 | 13.3 |
| A6 | 29.88 | 264 | 21.3 | 114.9 |
| A7 | 29.76 | 212 | 26.1 | 91.9 |
| A8 | 32.33 | 256 | 34.1 | 125.4 |
| A9 | 30.21 | 300 | 37 | 132.9 |
| A10 | 25.67 | 189 | 22.2 | 66.5 |
>TRINITY_DN40583_c0_g2_i1 from sample A6 / Example spliced isoformCCCACTCCCTACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTC
ACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGG
GATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGA
AGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGA
AGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAA
ACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGG
TCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTT
GCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGCCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGA
TAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATT
TGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACA
AGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGT
TGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTT
GGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGT
AATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
>TRINITY_DN40583_c0_g2_i9 from sample A6 / Example unspliced isoform:AGGCTGCTCAAGCTGATAAGCAGgtattctgttttgcttaaaatttgttgaatattcaaatggcattgggccccactatgttatgacatgcattcaattttcgatgtgttggatgacagacatcatgcaccattttgttctaactataagctttcataaatgaggtctttataaaattaatgctcttttgggtgtgtttc
catggatcagCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTA
TTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATA
ATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTT
TGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCATAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTG
TAATTTCCGTAGAGTGGGCTGCACATCTAT
Intron 14 GTATGTACAT ... TGCCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.77 | 151.6 | 5 | 41.9 |
| A2 | 21.68 | 90 | 2.3 | 22.9 |
| A3 | 23.23 | 164.1 | 8.5 | 46 |
| A4 | 31.91 | 83 | 4.8 | 36 |
| A5 | 17.3 | 85.4 | 1.3 | 17 |
| A6 | 18.13 | 169.6 | 3.8 | 34.6 |
| A7 | 15.63 | 336 | 10 | 59.8 |
| A8 | 31.15 | 171.3 | 4.5 | 74.6 |
| A9 | 19.76 | 368.4 | 5.5 | 84 |
| A10 | 13.88 | 344.5 | 1.8 | 53 |
>TRINITY_DN118285_c0_g1_i10 from sample A1 / Example spliced isoformCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCA
ACAAAGGCACCGTCCATGGGGCATCGTCCATGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTT
GAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGT
GACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGT
ATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTT
CAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAA
GGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCA
AGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCA
GCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAAC
ATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
>TRINITY_DN118285_c0_g1_i5 from sample A1 / Example unspliced isoform:CGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGATTAAATGGCTGTCTGAATTATCATGTATCAATTCCCAGATGTTAGTAATGCACCACA
GGTGAATGATTTGGTTCACCACTACTGAGATTTATGCCTTGGCGTCTGTCTCAAATGGGAAAGTTAAGGTCAATAACAGGGCTCTTTGTTTGCCTCATTAGTGGGATGTTTTACATGTACTTATTTTACTTCTGTGGGTTTTGTTTTGCTGCCATTTAGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCAT
GAGATCAGCATTGGTTTCAAAATCAACAAAGGCACCGTCCATGGGGCATCGTCCATGgtatgtacatcatctgtggttgtacaatttgtgtgtgattaaatggttgtctgaattatcatgtatctactcccagatgttagtaatgcagcatcaggtgaatgatttagttcaccactactgagatttataccttggcctct
gtttcaaatgggtgactgtaagtgggaatgttgaggtcaataacatggctctttgcttgcctctttagtgggatggtttacatgtatttattttacttctatgggttttgttttgctgccattcagCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGT
ACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTT
CAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAA
GAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCT
AAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTG
ATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCC
TCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAA
GCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTA
TTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
Intron 15 GTGGTAAACA ... GGCTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.11 | 151.4 | 50.8 | 17 |
| A2 | 27.05 | 89 | 33 | 17.9 |
| A3 | 26.79 | 82 | 30 | 6.1 |
| A4 | 23.08 | 70 | 21 | 20.1 |
| A5 | 21.43 | 33 | 9 | 5.1 |
| A6 | 23.08 | 229.9 | 68.9 | 37.8 |
| A7 | 28.37 | 266.3 | 105.5 | 39.2 |
| A8 | 24.94 | 328 | 109 | 62.8 |
| A9 | 21 | 387.1 | 102.9 | 67.4 |
| A10 | 27.23 | 231.3 | 86.5 | 42.9 |
>TRINITY_DN118285_c0_g1_i9 from sample A1 / Example spliced isoformCTCATTAGTGGGATGTTTTACATATATTTATTTTACTTGGGTTTTGTTTTGCTGCCATTCAGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCAACAAGGGCATCGTCCATGGTATGTACATCATCTGTGGTTGTACAATTTGTGTGTGATTAAATGGTTGTCTGA
ATTATCATGTATCTACTCCCAGATGTTAGTAATGCAGCATCAGGTGAATGATTTAGTTCACCACTACTGAGATTTATACCTTGGCCTCTGTTTCAAATGGGTGACTGTAAGTGGGAATGTTGAGGTCAATAACATGGCTCTTTGCTTGCCTCTTTAGTGGGATGGTTTACATGTATTTATTTTACTTCTATGGGTTTTGT
TTTGCTGCCATTCAGCCACTGGGGCCACAGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACA
TCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCAAAAA
GAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAAC
TATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGAC
TGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATATCAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATA
AGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGGAAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATG
ATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTCACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTC
AAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGATTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAG
CTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTAT
>TRINITY_DN118285_c0_g1_i11 from sample A1 / Example unspliced isoform:TACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTAGCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTG
ATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGACTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGATCTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAA
TAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACGGGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTG
TCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTACCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGA
TCAGCATTGGTTTCAAAATCAGGCACCGTCCATGAGAAACAAAGATGAAAATGGAAGCATTAGATCAACATTGGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTA
AACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTTCAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATGTGTCA
AAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCCATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATG
CAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGACTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTT
TGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGgtggtaaacattgacaggatgggatgtccatttttaagctgcaattttatatatattgagtttttaaaactaaaatcttgttttctgtgcccttgatttggcatctagagaataagggctttacattctaacctattttctttaagggct
ttacagGTCAAGGAATTGATTACAATA
Intron 16 GTATTTTACA ... TGCGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.4 | 189 | 61 | 0 |
| A2 | 20.86 | 129 | 34 | 0 |
| A3 | 28.28 | 208 | 82 | 0 |
| A4 | 24.86 | 133 | 44 | 1 |
| A5 | 28.46 | 93 | 37 | 0 |
| A6 | 25.59 | 157 | 54 | 0 |
| A7 | 23.89 | 376 | 118 | 0 |
| A8 | 18.18 | 135 | 30 | 0 |
| A9 | 20.3 | 369 | 94 | 3 |
| A10 | 19.33 | 363 | 87 | 1 |
>TRINITY_DN42631_c0_g1_i20 from sample A9 / Example spliced isoformGTTGCGGAATTGCATTTTGCTATTTGCATGATATAAAATATGGTTCGATCATTTTTTTAAAAACATGTATGACCCACTCCCTACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTA
GCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGAT
CTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGCGGTGACTCGAGCAGAGACGAGGCCTAGAAGGGTTTTATCAGACATTGGGAACCTGGGGTACCATGCTGCAAAGCCCAACG
GGGGTGATGATAATATCGAGCCAGAGAAACCTAGAAAACAGAGTCAGCTGGCTGACAAGCAAATGCCGAGGAAGTTTGGTGTCGATGTCAAGAATAAGAGTGCTACAACAAGGCCATCATCCATGCCACCGGGGCCACAGAGGAACAAAGATGAAAATGGAAGCATGAGACCAGCATTGGTTTCAAAATCCAAGTATGTA
CCAGATTTAGCAAAAGCAACAAAGGCACCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATTGGTTTCAAAATCCAAGCATGTACCAGATTTAGCAAAAGCAACAAGGGCATCGTCCATGCCACTGGGGCCACAGAGGAACAGAGATGAAAATGGAAGCATGAGATCAGCATT
GGTTTCAAAATCCAAGCATGTACCAGATTCAGCAAAAGCACCTGGGATTTCCAATGTTGGACTCTCACATAAACGTGAATCAGCTTCAGGCAAACTGCCTAGGGTTTCTAATGTTGAGGTATCAAGTAAACATCCATCAAGTTCAAGGATACAACACAGGCCTTCTGCTACTGGCCTCTCTGGTAAACACGCTTCAGCTT
CAGGGAGACCACCGAGGCCTTCAAATGTTGACATTTCATGCAAACCTGCTTCAAATACATCCAAGTCTAGGGTCTGCCCACCTATAGCTAAGGGTGTCTCAAGAAGAATCCCAGTGACTGATTTGTCAAAAAGAAAGGGCAGGCTTCAAAGAGCTTTTACATCAACACTGACTGCCAGAAGTGAGCTTGCATCTGGAGCC
ATTGAGCGGGGTGTTGTGGAAGAGGAAGGGGACTTGCCCAACATTGACGAAGCCGATAATGAAAATCAACTTGCTGTAGTTGAATATGTTCAAGACATTTACCATTTCTATTGGTATACAGAGGCATGCAACTATCTGTCATCAAACTACATGTTAAGTCAAGTTGATATCAACCAGAAGATGCGGGGAATACTTGTCGA
CTGGCTTATTGATGTGCATCTAAAGTTTGAATTGATGCACGAGACACTTTTTCTCATGACAAACCTGATTGATAGATTTCTTTCTATGGTGTACACTACTACGAGAAAGGATCTTCAACTAGTGGGTTTGACTGCTATGCTAGTTGCTTCCAAATATGAAGAGATTTGGGCTCCCAAGGTCAAGGAATTGATTACAATAT
CAAACAACGTTTACACATGTGATGAAGTTCTCTCTATGGAGAAATTGATGCTCAACAAACTAAGATTCAATTTGGCTGTACCAACTCCATTCGTTTTCATGAAAAGGTTTCTAAAGGCTGCTCAAGCTGATAAGCAGCTTGAGGATTTGGCATTCTATCTTGTTGAATTATGCCTGGTTGAGTATGAAGCATTGAAATGG
AAGCCATCTATGCTGGCAGCCTCTGCTATATACATAGCACAACATATCTTGCAACGGATGCCAGCTTGGACAAGACTGCTTCAGAAGCATGCACAATATAGAGAATCAGAACTCAAGGAATGTGCTATTATGATTGCAGGATTCCATAAGAATGCAAAAGAGGGTGATTTGAAGGCTGTGTATAATAAGTACTCAAGTTC
ACAATTTGGAGGTGTAGCTAAGCTACCGTTTGCTGCTTCTCCTCTTCTAGGAAATTAGACCCTTGTGCAGGTTGCCTGTTTTTATGCTTTGTAGTTTGTACTATAACATCCATCAGCTTTGTAAATAATGTCAAGTGCAATCAAGTTACAAGTTTTGTAATGTCAAGTATGAATTGTTGACATGGTGGATTGTGAAGAGA
TTAAATACTGGAATTAATTTATTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAAT
TTCTTTTCTCTTAATCCATAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTGTTTCTACTGTAATTTCCGTAGAGTGGGCTGCACATCTATGGAAGAGATTAAATACTGGAATTAATTTCTTTTCTCTTAATCCA
TAAAGGGTAAATACCCAGTAAATGTTTTGAAAAGTTTGGAGCTGTTTCAACTGTAATTATTGCTAGAATTTTGACTGAACATGTAATGTCTTTGGAGCTG
>TRINITY_DN42631_c0_g1_i23 from sample A9 / Example unspliced isoform:GTTGCGGAATTGCATTTTGCTATTTGCATGATATAAAATATGGTTCGATCATTTTTTTAAAAACATGTATGACCCACTCCCTACTAACCGTTCACGGGACCACGGCCTCAGCCCTCGCAGTGGCATTTGACTAATCCAAAGAATCTCGAGGAAGTTAGGAGGCTTTCGGAATTTTGAAATTGAAGTACCAGCGAAATCTA
GCCGTTGGAAGGGCGTATGAAGTTTACAAGGCCCACTTCTGCTCTTATTAAAACTCCTACATTCCAAATTTCACATTTCTGATCTCAACGAGCACGGGAGTTAAATAACGAAAATTCGTTCGCATACAGCATACGGCATTTTTTTGTGTCTTCTTGGTTTTTCCTTCTTCACTGGAACTGGATTTCACTGCTGTTCTGAT
CTCGGTTTTCAATTCTCTTTGTTGGGCACTCGGCTTTTTCACAATGAACCTCTCCAAGCAAGCGAAAGTTGGGATCGAGAATAGGGCGGGGAAGCCCAACAAGCCCGTTGCTAGCAAAGgtattttacagttttttgctgtacaaacgccataccaaaacctaataccagcaaatgggtagtaaatattgttagatttga
tatgaaattaatggctgtataggactctagagtactatagagatagatttgatagagattatatgcatgctctgcgatgcagCGGTGACTCGAGCAGAGACGA