NA ----> NA


Intron 1 GTCACAACAT ... CCTTTTTGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A146.939510.9
A255.56473
A356.147.81010
A498.890.158
A587.5177
A649.321418.39
A738.46241614
A84235.823.828
A958.1621.931.929
A1049.96272924.9



>TRINITY_DN111916_c0_g2_i3 from sample A1 / Example spliced isoform
AGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAAT
TATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTG
AATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAA
CTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGA
GCTTGCTGCAGATGCCATTATATGCTAAGTAAAGAGAGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACATGAAGATCTCTAAGTAAAATGTGTGAGACAA
CACCAAACTCAAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATATTGCACCTTGCTCAGAATAAGATGAACGAAGATAAA
CG


>TRINITY_DN111916_c0_g2_i4 from sample A1 / Example unspliced isoform:
AGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAAT
TATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTG
AATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAA
CTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGA
GCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATgtcacaacatcgatgtcaataactgggtacaaattgcttcaattttgattcagggaatcattggaacctctttccctttttgagGGAGGAGGAAGGATA
TGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACATGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTCAAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTC
GAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATATTGCACCTTGCTCAGAATAAGATGAACGAAGATAAACG




Intron 2 GTAAGTAATG ... TTCTACTTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A161.545106
A227.76.832.2
A324.589.751.3
A442.464.943.2
A512.476.310.9
A646.8718.519.113.6
A748.3515.61316
A851.1323.624.225.1
A934.7731.218.914.3
A1026.5628.6128.7



>TRINITY_DN111916_c0_g2_i4 from sample A1 / Example spliced isoform
AGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAAT
TATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTG
AATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAA
CTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGA
GCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGTCACAACATCGATGTCAATAACTGGGTACAAATTGCTTCAATTTTGATTCAGGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGAGGAGGAAGGATA
TGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACATGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTCAAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTC
GAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATATTGCACCTTGCTCAGAATAAGATGAACGAAGATAAACG


>TRINITY_DN111916_c0_g2_i1 from sample A1 / Example unspliced isoform:
AGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAAT
TATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTG
AATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAA
CTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGA
GCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATgtaagtaatgctatttttatgatattttccatataacaactatctgtgtcctgtagaatgactgaaccataggcattttgtttggttgtttctacttag


GTCACA
ACATCGATGTCAATAACTGGGTACAAATTGCTTCAATTTTGATTCAGGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACATGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTCAAAATGA
GACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATATTGCACCTTGCTCAGAATAAGATGAACGAAGATAAACG




Intron 3 GTGAGTCTCC ... TATTTTCCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A121.4322102
A221.951645
A321.212686
A436.36735
A512.821741
A611.764575
A714.2948412
A819.46601415
A917.01611213
A1011.865268



>TRINITY_DN43597_c0_g1_i8 from sample A9 / Example spliced isoform
TTTTTTGTAGATGAGCTTCTTGACATGATGTATAGAGATGACTCTTCTTTGATATTTTGCGTTCACTGAATCCTCCGAAAGACGATGAAGGGCGTAGCGGACAAATGCTAGCGAGGCAGCTTCTGAGAATGCTCTGCGAGAACGCCCCGGAAAAAGCCGGAAAAATCATATCCAAGAGAAGTCGTATTTTACATTCGTTT
TTCAAAGGGCACACAAGGCGGATATTGCAATGGTTTGATCATTTTGCCGGCATTGGAGAATCTGAGCACAAACGTGGTGCCAGGTCAATTTCACAATTTGCATTTGTGAACAGAGACATGTGTTGGGATGAGCTTGAATGGAAGGGAAGGCATGGACAATCCCCTGCAATGGTTGCAACAAAACCACATTACTTTCTGGA
TTTGGATGTTCTTAGTACTGTGGAAAATTTCATTGAAAATGTTCCAGAGTTTTGGTCATCTGAACAGTTCACAAAGTCTGTACAAGATGGTCAAATTATTTCTCTTGATCTGGACTTTTTTGTAGATGAGCTTCTTGACATGATGTATAGAGATGACTCTTCGGAGGTGTGGCAGGCTGTCGAAAAGTTTCTTTTAGAGG
AAAATTTTTGTTCTCTTTGTCAGCGGCTTCTCATTCTTCTTAGTGACATGGAACTTTTGACATTTCTGAATGCTGTTGGGAAAATCCTTGCATCTAGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCA
CTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAATTATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATT
TCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTGAATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAA
AGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAACTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAA
TGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGAGCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGTCA
CAACATCGATGTCAATAACTGGGTACAAATTGCTTCAATTTTGATTCAGGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGTTTGATATACCAAGATCGTTGGTGTTATGCTTTTGGAGTTGCAACTGAAACTGACCGATAACTGAAACATTGTAGAAGTAAAGTCATCTGCCATGTGAAACAGAGAATGGTGTGCAGA
TTATATGACGGGTTGTCAACACCATAAGAGGATTATAGATGAAATTAGATGGGATGTAAAGGGTGAACAGAAGATGTTTAAAATAATCTAACCACATGCATCACATTACATGAATTTTCCATGTTCATATCCAAAGTGAGTCAAGATGGGGCTTGGATGCATCTTATATTGCTCAATGCTTTTGATCTGGTTACATCCTT
ATTCAACTAAACTTTTGCTTCATACTAATGTGACATCATTATTTGTAGCTGAGCTATTTCCAAGTTAGTTGAGTTATTTATGAGTTAGCAGAGGTATTTCCAATTTGACG


>TRINITY_DN43597_c0_g1_i2 from sample A9 / Example unspliced isoform:
CCGACAAATATTGTCCAAACAACCCCTCCGTAGACATCTCTATAATTGAGGGGATGGAAAGCTTTTAATGGCACCATATATTAAAGGTTTCATCTATCCTTGCTTTCCAAGACGAGCAAAATGACTAACCTGTTCATGGCAGTCCCGGACGATCTTGTTTCATCATCGGCGGCTCACGATGGAATGCAAAGCACGAAGAG
AATAAGCATGCTGGAAAGACTCGAACCGTTGATCTGGAAGTTGATTACGGCTGATGGCCGTTCCGAAGCTCGCCTATGGCTCTGCAACGCGGTGGCTTCGATCAGTACGATATCTCGCCAGGAACAGTTTGCACTCTTCTTTGATATTTTACGTTCACTGAATCCTCCGAAAGACGATGAAGGGCGCAGCGGACAAATGC
TGGCGAGGCAGCTTCTGAGAATGCTCTGCGAGAACGCCCCGGAAAAAGCCGGAAAAATCATATCCAAGAGAAGTCGTATTTTACATTCGTTTTTCAAAGGGCACACAAGGCGGATATTGCAATGGTTTGATCATTTTGCCGGCATTGGAGAATCTGAGCACAAACGTGGTGCCAGGTCAATTTCACAATTTGCATTTGTG
AACAGAGACATGTGTTGGGATGAGCTTGAATGGAAGGGAAGGCATGGACAATCCCCTGCAATGGTTGCAACAAAACCACATTACTTTCTGGATTTGGATGTTCTTAGTACTGTGGAAAATTTCATTGAAAATGTTCCAGAGTTTTGGTCATCTGAACAGTTCACAAAGTCTGTACAAGATGGTCAAATTATTTCTCTTGA
TCTGGACTTTTTTGTAGATGAGCTTCTTGACATGATGTATAGAGATGACTCTTCGGAGGTGTGGCAGGCTGTCGAAAAGTTTCTTTTAGAGGAAAATTTTTGTTCTCTTTGTCAGCGGCTTCTCATTCTTCTTAGTGACATGGAACTTTTGACATTTCTGAATGCTGTTGGGAAAATCCTTGCATCTAGAAAATGTGATA
ATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAATTATTGAGAGCATT
ATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTGAATTCTACCGCCA
CTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAACTGGAGGAAAAAT
GGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGgtgagtctccaacatgctttagtactaacggtgaacttaacttccacataaaatagctatttgcttgtttgtcgttgatagtcctgtctctatagcttttctgtttactttaagttagaagaggaggtgagaataagtaatagaaagatcaagttagag
ggaatggaggtgagaaaatagagcatcttgctgaaagcctgtgcatatatttttttcgaaggttagaataagcaatagaaatattaagttggagagaaatggaggtgagaaaacagagcatcttgctagatttgtggatagtttttctatctacttttaagttgaccacatggtattttaattttggtgtattttccag
G
TTGAT
CTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGAGCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATT
TACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGTCACAACATCGATGTCAATAACTGGGTACAAATTGCTTCAATTTTGATTCAGGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACCTG
AAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTCAAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATAAGTAGAA
GAATATTGCACCTTGCTCAGAATAAGATAAACGAAGATAAACGACTGTCAATGGAACAGTGGGATTTGCATGTGCAAGGGAATATGTATAAAATGAAACGCTTAAAATACTTTGTCACCTTTGTTTTTATTGATGCTCTTTTGAGATGTAAGATATCTCAACTATAAACAATGGTGATTAAGTTTCTTCCCACCATGTAC
ATGACGTCTCTTAGACTCGAATGATTTAAAATGGGTCTACCTTAAACCTAAGAAAATAGAAAATGTTTTGCCTTTGTAGAACTCCTTTTCTTTTGTAGTTTTTATGAAAGCTATATGTGGTCATAAATTAGGATGATCTGTGGTAGAGATTCTCTTTAGGACTCAAGGTAGTGTTATTGCAGAGCTTTGTTAGAATGTGT
GAACATAATTTATCGTTATCGACTTTGGTCATACTTAGGCTGACTAATTCAAGTGAGGTTGTTGTAACACTTGGAAGACCAAATAACATAAATAAAGGTGCCATACGGTCATTGTGATGTATCCAATGGCATTTCTCTTCTCTTGAGGTGCAGCTTTTATTCTTGCCTTTAAAGTTCTCTAGATTCATCTATCTCCTAAT
ACCAAGTGATGATATAGCTTTTTATTTAGGGCATTTTTCAATACCAACCATATATTCTTGGTCTAAAA




Intron 4 GTAAGTAATG ... CCTTTTTGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A151.999109.5
A242.86433
A344.28756
A491.660.546
A580117
A649.0914198
A736.84241315
A842.0434.52525
A946.9221.51919
A1033.74271215.5



>TRINITY_DN111916_c0_g2_i3 from sample A1 / Example spliced isoform
AGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAAT
TATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTG
AATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAA
CTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGA
GCTTGCTGCAGATGCCATTATATGCTAAGTAAAGAGAGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACATGAAGATCTCTAAGTAAAATGTGTGAGACAA
CACCAAACTCAAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATATTGCACCTTGCTCAGAATAAGATGAACGAAGATAAA
CG


>TRINITY_DN111916_c0_g2_i1 from sample A1 / Example unspliced isoform:
AGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAAT
TATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTG
AATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAA
CTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGA
GCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATgtaagtaatgctatttttatgatattttccatataacaactatctgtgtcctgtagaatgactgaaccataggcattttgtttggttgtttctacttag
gtcacaacatcgatgtcaataactgggtacaaattgcttcaattttgattcagggaatcattggaacctctttccctttttgag
GGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACATGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTCAAAATGA
GACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATATTGCACCTTGCTCAGAATAAGATGAACGAAGATAAACG




Intron 5 GTAAGTAATG ... TTTGATTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A164.713101
A245.45332
A333.33651
A4100040
A533.33110
A661.54101913
A768.4261313
A851.9192516
A943.28191910
A104511126



>TRINITY_DN45766_c0_g1_i5 from sample A10 / Example spliced isoform
GTAGACATCTCTATAATTGAGGGGATGGAAAGCTTTTAATGGCACCATATATTTAACGGTTTCATCTATCCTTGCTTTCCAAGACGAGCAAAATGACTAATCTGTTCATGGCAGTCCCGGACGATCTTGTTTCATCATCGGCGGCTCACGATGGAATGCAAAGCACGAAGAGAATAAGCATGCTGGAAAGACTCGAACCG
TTGATCTGGAAGTTGATTACGGCTGATGGCCGTTCCGAAGCTCGCCTATGGCTCTGCAACGCGGTGGCTTCGATCAGTACGATATCTCGCCAGGAACAGTCTGCACTCTTCTTTGATATTTTGCGTTCACTGAATCCTCCGAAAGACGATGAAGGGCGCAGCGGACAAATGCTGGCGAGGCAGCTTCTGAGAATGCTCTG
CGAGAACGCCCCGGAAAAAGCCGGAAAAATCATATCCAAGAGAAGTCGTATTTTACATTCGTTTTTCAAAGGGCACACAAGGCGGATATTGCAATGGTTTGATCATTTTGCCGGCATTGGAGAATCTGAGCACAAACGTGGTGCCAGGTCAATTTCACAATTTGCATTTGTGAACAGAGACATGTGTTGGGATGAGCTTG
AATGGAAGGGAAGGCATGGACAATCCCCTGCAATGGTTGCAACAAAACCACATTACTTTCTGGATTTGGATGTTCTTAGTACTGTGGAAAATTTCATTGAAAATGTTCCAGAGTTTTGGTCATCTGAACAGTTCACAAAGTCTGTACAAGATGGTCAAATTATTTCTCTTGATCTGGACTTTTTTGTAGATGAGCTTCTT
GACATGATGTATAGAGATGACTCTTCGGAGGTGTGGCAGGCTGTCGAAAAGTTTCTTTTAGAGGAAAATTTTTGTTCTCTTTGTCAGCGGCTTCTCATTCTTCTTAGTGACATGGAACTTTTGACATTTCTGAATGCTGTTGGGAAAATCCTTGCATCTAGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAA
GAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAATTATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAG
ACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTGAATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGA
ATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAACTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTC
AGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGAGCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCA
CCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACCTGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTC
AAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATAAGTAGAAGAATATTGCACCTTGCTCAGAATAAGATAAACGAAGATA
AACGAC


>TRINITY_DN45766_c0_g1_i1 from sample A10 / Example unspliced isoform:
GCGAGGCAGCTTCTGAGAATGCTCTGCGAGAACGCCCCGGAAAAAGCCGGAAAAATCATATCCAAGAGAAGTCGTATTTTACATTCGTTTTTCAAAGGGCACACAAGGCGGATATTGCAATGGTTTGATCATTTTGCCGGCATTGGAGAATCTGAGCACAAACGTGGTGCCAGGTCAATTTCACAATTTGCATTTGTGAA
CAGAGACATGTGTTGGGATGAGCTTGAATGGAAGGGAAGGCATGGACAATCCCCTGCAATGGTTGCAACAAAACCACATTACTTTCTGGATTTGGATGTTCTTAGTACTGTGGAAAATTTCATTGAAAATGTTCCAGAGTTTTGGTCATCTGAACAGTTCACAAAGTCTGTACAAGATGGTCAAATTATTTCTCTTGATC
TGGACTTTTTTGTAGATGAGCTTCTTGACATGATGTATAGAGATGACTCTTCGGAGGTGTGGCAGGCTGTCGAAAAGTTTCTTTTAGAGGAAAATTTTTGTTCTCTTTGTCAGCGGCTTCTCATTCTTCTTAGTGACATGGAACTTTTGACATTTCTGAATGCTGTTGGGAAAATCCTTGCATCTAGAAAATGTGATAAT
GGGTTTGATTCAAAGGAGAAAGTGAAGAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAATTATTGAGAGCATTAT
TTTGGAGATGAAACAAAGTTCAAAAGACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTGAATTCTACCGCCACT
CTAATGAGCTTTCCAGCACAGAAAGAATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAACTGGAGGAAAAATGG
ATACTCTCCACTGACAATAATGCTTCAGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGAGCTTGCTGCAGATGC
CATTATTTGCTAAGTAAAGAGGGTCACCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATgtaagtaatgctatttttatgatattttccatataacaactatctgtgtcctgtagaatgactgaaccataggcattttgtttggttgtttctacttaggtcacaacatcgatg
tcaataactgggtacaaattgcttcaattttgattcag
GGAATCATTGGAACCTCTTTCCCTTTTTGAGGTAAACATTGGAATATCTAATTTCTTTCAATAACTTTTTCTTCTAAACCAAAA




Intron 6 GTCACAACAT ... TTTGATTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A161.25354.5
A259.8236.52.5
A355696
A410004.55.5
A574.1214.54.5
A663.61021.514
A769.9861612
A851.551926.514
A956.89193119.5
A1066.171126.517



>TRINITY_DN45766_c0_g1_i5 from sample A10 / Example spliced isoform
GTAGACATCTCTATAATTGAGGGGATGGAAAGCTTTTAATGGCACCATATATTTAACGGTTTCATCTATCCTTGCTTTCCAAGACGAGCAAAATGACTAATCTGTTCATGGCAGTCCCGGACGATCTTGTTTCATCATCGGCGGCTCACGATGGAATGCAAAGCACGAAGAGAATAAGCATGCTGGAAAGACTCGAACCG
TTGATCTGGAAGTTGATTACGGCTGATGGCCGTTCCGAAGCTCGCCTATGGCTCTGCAACGCGGTGGCTTCGATCAGTACGATATCTCGCCAGGAACAGTCTGCACTCTTCTTTGATATTTTGCGTTCACTGAATCCTCCGAAAGACGATGAAGGGCGCAGCGGACAAATGCTGGCGAGGCAGCTTCTGAGAATGCTCTG
CGAGAACGCCCCGGAAAAAGCCGGAAAAATCATATCCAAGAGAAGTCGTATTTTACATTCGTTTTTCAAAGGGCACACAAGGCGGATATTGCAATGGTTTGATCATTTTGCCGGCATTGGAGAATCTGAGCACAAACGTGGTGCCAGGTCAATTTCACAATTTGCATTTGTGAACAGAGACATGTGTTGGGATGAGCTTG
AATGGAAGGGAAGGCATGGACAATCCCCTGCAATGGTTGCAACAAAACCACATTACTTTCTGGATTTGGATGTTCTTAGTACTGTGGAAAATTTCATTGAAAATGTTCCAGAGTTTTGGTCATCTGAACAGTTCACAAAGTCTGTACAAGATGGTCAAATTATTTCTCTTGATCTGGACTTTTTTGTAGATGAGCTTCTT
GACATGATGTATAGAGATGACTCTTCGGAGGTGTGGCAGGCTGTCGAAAAGTTTCTTTTAGAGGAAAATTTTTGTTCTCTTTGTCAGCGGCTTCTCATTCTTCTTAGTGACATGGAACTTTTGACATTTCTGAATGCTGTTGGGAAAATCCTTGCATCTAGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAA
GAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAATTATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAG
ACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTGAATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGA
ATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAACTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTC
AGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGAGCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCA
CCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGACACTTTGCCACCTGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTC
AAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAGAAGAATAAGTAGAAGAATATTGCACCTTGCTCAGAATAAGATAAACGAAGATA
AACGAC


>TRINITY_DN45766_c0_g1_i2 from sample A10 / Example unspliced isoform:
GTAGACATCTCTATAATTGAGGGGATGGAAAGCTTTTAATGGCACCATATATTTAACGGTTTCATCTATCCTTGCTTTCCAAGACGAGCAAAATGACTAATCTGTTCATGGCAGTCCCGGACGATCTTGTTTCATCATCGGCGGCTCACGATGGAATGCAAAGCACGAAGAGAATAAGCATGCTGGAAAGACTCGAACCG
TTGATCTGGAAGTTGATTACGGCTGATGGCCGTTCCGAAGCTCGCCTATGGCTCTGCAACGCGGTGGCTTCGATCAGTACGATATCTCGCCAGGAACAGTCTGCACTCTTCTTTGATATTTTGCGTTCACTGAATCCTCCGAAAGACGATGAAGGGCGCAGCGGACAAATGCTGGCGAGGCAGCTTCTGAGAATGCTCTG
CGAGAACGCCCCGGAAAAAGCCGGAAAAATCATATCCAAGAGAAGTCGTATTTTACATTCGTTTTTCAAAGGGCACACAAGGCGGATATTGCAATGGTTTGATCATTTTGCCGGCATTGGAGAATCTGAGCACAAACGTGGTGCCAGGTCAATTTCACAATTTGCATTTGTGAACAGAGACATGTGTTGGGATGAGCTTG
AATGGAAGGGAAGGCATGGACAATCCCCTGCAATGGTTGCAACAAAACCACATTACTTTCTGGATTTGGATGTTCTTAGTACTGTGGAAAATTTCATTGAAAATGTTCCAGAGTTTTGGTCATCTGAACAGTTCACAAAGTCTGTACAAGATGGTCAAATTATTTCTCTTGATCTGGACTTTTTTGTAGATGAGCTTCTT
GACATGATGTATAGAGATGACTCTTCGGAGGTGTGGCAGGCTGTCGAAAAGTTTCTTTTAGAGGAAAATTTTTGTTCTCTTTGTCAGCGGCTTCTCATTCTTCTTAGTGACATGGAACTTTTGACATTTCTGAATGCTGTTGGGAAAATCCTTGCATCTAGAAAATGTGATAATGGGTTTGATTCAAAGGAGAAAGTGAA
GAAGAAGACATTGCAGTTCAGCTGGCTTGAAACTGTCATGTCCACAGGTATGGAATGCCAATCACTTGATGAGCTACTTCTCAATAATGCCTGCATCAATCAGGGTCGCCAGATTTTGCGGTGCTTGCGGGATGAGGAGCATGAAGAGGAAAAGAAAATTATTGAGAGCATTATTTTGGAGATGAAACAAAGTTCAAAAG
ACAGTGAGCACTGGGCTTTAAGAAGAGAATGCATACAGATGAAAAAATGGATGGCAATCAAATTTCTTTCTATTGAAAATTGGATCTTACATTACCATCTTTCTAATGAATGCAAAACAGTTGCATCCTGTGAAAACTTATTTACTTTAAATGGGATTGAATTCTACCGCCACTCTAATGAGCTTTCCAGCACAGAAAGA
ATCTTGAGATTTTCTCATGGTTCAAAGAGATCCAAGAAAAAGAGAAAGGAAAGGGCTGGGAAAAAGAAAAGAAGAAAAATAACAGCCAGTGACTACAGCAGTGCAAGTGGTGAGGAGGATACGGGCAGAGAATACACTAAGATATTGACTGGTTCAGAACTGGAGGAAAAATGGATACTCTCCACTGACAATAATGCTTC
AGTCTGGAGCATGGTTGATCTGCCAGAGCATCTTGCTGGATATGCTCTTATGAGTTGGTTAAAATGGGTCATCTCTTGTTGGACTTGTGAATGGAGTTAGCTGGCCAAGATCATTTCACATTTTACTCTTAGATTTGTACAGGGTGATCTGACAGGGGAGCTTGCTGCAGATGCCATTATTTGCTAAGTAAAGAGGGTCA
CCTCCAGGTGGATTTACTGAATTGAACTCGATATCTGAACATTTACCATGTGTACCTGATgtcacaacatcgatgtcaataactgggtacaaattgcttcaattttgattcagGGAATCATTGGAACCTCTTTCCCTTTTTGAGGGAGGAGGAAGGATATGGAGTCTGGACACACGCATTACAATTAGGACATATATGGA
CACTTTGCCACCTGAAGATCTCTAAGTAAAATGTGTGAGACAACACCAAACTCAAAATGAGACAACCATATTTCAGGAAGTTGCTGTAATACATAAGAACATGAAAGGCCAATAATTTGAGTTTGAAAATTTTAAATAGTTACCGGATTACATGTTTTCGAGATTGCAGTCTCCAATCACCACTCTATTTACCGAAGCAG
AAGAATAAGTAGAAGAATATTGCACCTTGCTCAGAATAAGATAAACGAAGATAAACGAC