sp|Q9C8M2|MSRB1_ARATH ----> Peptide methionine sulfoxide reductase B1, chloroplastic
Intron 1 GTATGATTTT ... GCTCTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.87 | 27.5 | 11 | 2 |
| A2 | 26.88 | 27.5 | 9 | 2 |
| A3 | 24.59 | 33 | 10 | 2 |
| A4 | 17.19 | 20.5 | 4 | 6 |
| A5 | 16.27 | 17.5 | 3 | 0 |
| A6 | 21.05 | 140.5 | 32 | 5 |
| A7 | 25.59 | 147.5 | 46 | 4 |
| A8 | 20.23 | 166.5 | 40 | 0 |
| A9 | 25.29 | 121 | 37 | 3 |
| A10 | 25.39 | 143.5 | 43 | 1 |
>TRINITY_DN32727_c0_g1_i1 from sample A9 / Example spliced isoformGTTGTTGCAAGCTGCACGTGGAAGTGCGCATCTCACACAATTTATCGATCGAGAGCTATTCTTTCGCAGTTTTTTTTAATTGCTGATGTATAGGAAATGGGTCCCTGCTTCAGCCTTTTCTATATACTCTCGAGAAAGCTCGAATTGAATAACAGTCATGACGATAAGTAGTACATGTGCTGGTGGTTTATCCCCTCGCC
TGCTCTCTTCCCACTCCATGCACCGTTCGGCGATAAATACCATCTCAAAGTCCTATCTAGACTCATACTCTTTCAAAACTGTGCAGAAAACGGATGCTTTGAGTCCAACATATCAAATTCTTCTACACAATTATTGCACATCTGAAGCGAGGCCGCCTTCTTCATTTGGAGGAATTAGGAAATTGTATTCCTGGAATAGT
AGAAGGGCCACGGACGACAAACCACATCGTCAAATGGGGTTGGCCTGCTCTTCTTCTTCTGCCGAAAAGCCACTAGGCGATCTCCCAGGGAAGATGGACTATTCTTCTATCAGTGATGATGAGTGGAAGAAACGCCTTACTAAGAATCAGTACGATATTACTCGCAAGAAAGGAACTGAGAGGGCTTTTACTGGGGAATA
CTGGAATACTAAGAGTGCTGGGATCTACCACTGTGTATGTTGTGATACACCTTTATTTGAGTGAGATTCTCATCCAATCTCAATTTCATATAGTTCTAACACTAAATAAAAAAATATTCTTGAAATATCACTTAGACACATTAATGCCATTCTCCACAGGTTTTTGGCATTGAAT
>TRINITY_DN32727_c0_g1_i2 from sample A9 / Example unspliced isoform:GTTGTTGCAAGCTGCACGTGGAAGTGCGCATCTCACACAATTTATCGATCGAGAGCTATTCTTTCGCAGTTTTTTTTAATTGCTGATGTATAGGAAATGGGTCCCTGCTTCAGCCTTTTCTATATACTCTCGAGAAAGCTCGAATTGAATAACAGTCATGACGATAAGTAGTACATGTGCTGGTGGTTTATCCCCTCGCC
TGCTCTCTTCCCACTCCATGCACCGTTCGGCGATAAATACCATCTCAAAGTCCTATCTAGACTCATACTCTTTCAAAACTGTGCAGAAAACGGATGCTTTGAGTCCAACATATCAAATTCTTCTACACAATTATTGCACATCTGAAGCGAGGCCGCCTTCTTCATTTGGAGGAATTAGGAAATTGTATTCCTGGAATAGT
AGAAGGGCCACGGACGACAAACCACATCGTCAAATGGGGTTGGCCTGCTCTTCTTCTTCTGCCGAAAAGCCACTAGGCGATCTCCCAGGGAAGATGGACTATTCTTCTATCAGTGATGATGAGTGGAAGAAACGCCTTACTAAGAATCAGTACGATATTACTCGCAAGAAAGGAACTGAGAGGGCTTTTACTGGgtatga
ttttaattatgtttgcaagatacgaaaatgatctttttcatattcctctctctcatgaaaggcattaataagcccttttgtttgagctctatcagGGAATACTGGAATACTAAGAGTGCTGGGATCTACCACTGTGTATGTTGTGATACACCTTTATTTGAGTGAGATTCTCATCCAATCTCAATTTCATATAGTTCTAA
CACTAAATAAAAAAATATTCTTGAAATATCACTTAGACACATTAATGCCATTCTCCACAGGTTTTTGGCATTGAAT
Intron 2 GTGAGATTCT ... TGCCAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.52 | 44 | 5.3 | 10 |
| A2 | 11.67 | 53 | 6 | 7 |
| A3 | 9.52 | 57 | 5.3 | 6 |
| A4 | 23.68 | 29 | 5.3 | 9 |
| A5 | 13.33 | 39 | 5.7 | 6 |
| A6 | 10.36 | 320 | 19.7 | 37 |
| A7 | 8.81 | 321 | 21 | 31 |
| A8 | 7.25 | 307 | 40 | 24 |
| A9 | 11.15 | 287 | 17.3 | 36 |
| A10 | 6.21 | 287 | 14 | 19 |
>TRINITY_DN110427_c0_g1_i1 from sample A1 / Example spliced isoformAGCTGCACGTGGAAGTGCGCATCTCACACAATTTATCGATCGAGAGCTATTCTTTCGCAGTTTTTTTTAATTGCTGATGTATAGGAAATGGGTCCCTGCTTCAGCCTTTTCTATATACTCTCGAGAAAGCTCGAATTGAATAACAGTCATGACGATAAGTAGTACATGTGCTGGTGGTTTATCCCCTCGCCTGCTCTCTT
CCCACTCCATGCACCGTTCGGCGATAAATACCATCTCAAAGTCCTATCTAGACTCATACTCTTTCAAAACTGTGCAGAAAACGGATGCTTTGAGTCCAACATATCAAATTCTTCTACACAATTATTGCACATCTGAAGCGAGGCCGCCTTCTTCATTTGGAGGAATTAGGAAATTGTATTCCTGGAATAGTAGAAGGGCC
ACGGACGACAAACCACATCGTCAAATGGGGTTGGCCTGCTCTTCTTCTTCTGCCGAAAAGCCACTAGGCGATCTCCCAGGGAAGATGGACTATTCTTCTATCAGTGATGATGAGTGGAAGAAACGCCTTACTAAGAATCAGTACGATATTACTCGCAAGAAAGGAACTGAGAGGGCTTTTACTGGGGAATACTGGAATAC
TAAGAGTGCTGGGATCTACCACTGTGTATGTTGTGATACACCTTTATTTGACTCAAACACAAAGTTTGATAGTGGAACTGGATGGCCATCTTATTATGATCCCATTGGAAACAATGCGATGTCAAAAATGGATTTTTCAATAATATTTATGCCACGCCAAGAAGTTGTGTGCGCAACTTGTGATGCACATCTTGGTCATG
TTTTTGACGATGGCCCACCACCTACTGGGAAGCGGTACTGCATGAACAGTGCTTCTTTGAAGTTGAGACCACGAAAGGAATAATAAAACAAGTCACCGAGGACAATAATGTGGCCTTATGGAAATCATAGGCAAGCGATTATATGGTATTAGGCTGCCTTAAATACGGTGGCATTTTATCACAAATCCTTCTTAAAAACC
AAGTTTCAGATTGAAAAGAGAATAAACAGGGTATAATAATTGTGCTTATACTAGTCTAGTATCTGATTAGCGTCATTGGCTGATATGACCCGTCATTTTGTTGATAAAAGTTTTGACGACTCCATCGTATCTTGTATGGAACTGATATTATATGCTCCCTTTGATAAATGCACAAATGGAACATATGTTTGGAACTCTAT
ATGTTGCACAATGTTACGTACTTGTAATACAAATTGTTCAAAGTTTGGTTATAAATTAAATTAAA
>TRINITY_DN110427_c0_g1_i2 from sample A1 / Example unspliced isoform:AGCTGCACGTGGAAGTGCGCATCTCACACAATTTATCGATCGAGAGCTATTCTTTCGCAGTTTTTTTTAATTGCTGATGTATAGGAAATGGGTCCCTGCTTCAGCCTTTTCTATATACTCTCGAGAAAGCTCGAATTGAATAACAGTCATGACGATAAGTAGTACATGTGCTGGTGGTTTATCCCCTCGCCTGCTCTCTT
CCCACTCCATGCACCGTTCGGCGATAAATACCATCTCAAAGTCCTATCTAGACTCATACTCTTTCAAAACTGTGCAGAAAACGGATGCTTTGAGTCCAACATATCAAATTCTTCTACACAATTATTGCACATCTGAAGCGAGGCCGCCTTCTTCATTTGGAGGAATTAGGAAATTGTATTCCTGGAATAGTAGAAGGGCC
ACGGACGACAAACCACATCGTCAAATGGGGTTGGCCTGCTCTTCTTCTTCTGCCGAAAAGCCACTAGGCGATCTCCCAGGGAAGATGGACTATTCTTCTATCAGTGATGATGAGTGGAAGAAACGCCTTACTAAGAATCAGTACGATATTACTCGCAAGAAAGGAACTGAGAGGGCTTTTACTGGGGAATACTGGAATAC
TAAGAGTGCTGGGATCTACCACTGTGTATGTTGTGATACACCTTTATTTGAgtgagattctcatccaatctcaatttcatatagttctaacactaaataaaaaaatattcttgaaatatcacttagacacattaatgccattctccacaggtttttggcattgaattagtgtgtttttgtggaatttgtatttttgtttg
ggccatgtgaaacgtttgagttgctttgtccccaattcatacttttgtatgatgtcattgttgccaatcagCTCAAACACAAAGTTTGATAGTGGAACTGGATGGCCATCTTATTATGATCCCATTGGAAACAATGCGATGTCAAAAATGGATTTTTCAATAATATTTATGCCACGCCAAGAAGTTGTGTGCGCAACTTG
TGATGCACATCTTGGTCATGTTTTTGACGATGGCCCACCACCTACTGGGAAGCGGTACTGCATGAACAGTGCTTCTTTGAAGTTGAGACCACGAAAGGAATAATAAAACAAGTCACCGAGGACAATAATGTGGCCTTATGGAAATCATAGGCAAGCGATTATATGGTATTAGGCTGCCTTAAATACGGTGGCATTTTATC
ACAAATCCTTCTTAAAAACCAAGTTTCAGATTGAAAAGAGAATAAACAGGGTATAATAATTGTGCTTATACTAGTCTAGTATCTGATTAGCGTCATTGGCTGATATGACCCGTCATTTTGTTGATAAAAGTTTTGACGACTCCATCGTATCTTGTATGGAACTGATATTATATGCTCCCTTTGATAAATGCACAAATGGA
ACATATGTTTGGAACTCTATATGTTGCACAATGTTACGTACTTGTAATACAAATTGTTCAAAGTTTGGTTATAAATTAAATTAAA