sp|C0LGF4|FEI1_ARATH ----> LRR receptor-like serine/threonine-protein kinase FEI 1
Intron 1 GTTAGTACTT ... ATTTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.93 | 20 | 7 | 0 |
| A2 | 36.84 | 12 | 7 | 0 |
| A3 | 30.36 | 39 | 17 | 1 |
| A4 | 16.67 | 25 | 5 | 3 |
| A5 | 39.13 | 14 | 9 | 0 |
| A6 | 25 | 30 | 10 | 0 |
| A7 | 31.97 | 100 | 47 | 1 |
| A8 | 24.49 | 74 | 24 | 1 |
| A9 | 31.43 | 72 | 33 | 0 |
| A10 | 28.43 | 73 | 29 | 1 |
>TRINITY_DN44161_c0_g2_i4 from sample A7 / Example spliced isoformGCAAGTCTCAATGGCTTCACTGACCTAGAATCCAATATTTAATAAACTATGATTTATTTTTTTCAAGGTCCCCATTTCATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCA
GTACTGGACCATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAG
TTAGGAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAGGAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACCCTTCTGTGTTTTATTGTTCATTGCGGTGCTCT
TACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCATGTGGGTGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCTCAGCGGCACTATATCTCCCAGCGTTGGCAAAT
TGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTACTTGCGAGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATATTTCAAGCAATTCATTGAAAGGAGTGATTCCA
CCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTGCGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTTGAGTTCCCTGCAATAGTACCCACGTCCGGTGA
CGATGATAATGCCACTAATGTTAAACAAGTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTGGCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGA
ACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGG
GTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCTATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTAAACTGGATGGCCCGATTGAAGATAGCACTTGG
AGCAGGCCGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGTGATATAAAGTCGAGCAATATACTTATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGTTGTTGCAGGCACACTTGGATACTTAGCTCCAGAGT
ACATGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCCTTCCTTTATCAACGAGGGAGTGAATGTGGTAGGATGGGTGAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTATTGATCCAAGATGTGGTGGCGTACCCAGG
GATTGTATTGAGGTAGTTCTTGAAATTGCAGCCAGGTGCATAGCACCAAACCCTGAAGACCGGCCAACCATGAACAGAGTAGTGCAGATGCTAGAGGAAGAGACTATGACTCCCAACTCAAGGGAATTCTGCCCAATAATGAACGCAGTATTTCAAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAATTTTA
TGACTCATGCCCTGATGAAAAATTAATTCAATTCGACTGCTAGATGTAGAGATAATTTAAGGTAATAATGCTTTCCATTTTTACAGGGATTGTTTTCATCGAGGATATATTGTTTGGGCCTTTTAGTAGCCCTCCCATTTGTTTTTCTTTAGCCATTTGTATATAAACCATAATGAGATGTAGTAATTTTTTATGACAGT
AGAGCAGATCCCGATCATCAATGCTAAACAAACTAAATTGTATGTGAACTATAATCAGCAGCAAGCTGTATGGATGAATTCAAATCAAAGATTGTACAAGTGAGCTATTTCAGTTCAACAACAAAGCACTACCAATGAATGTTTATTAGGGTGCGTTTCCACACCTTTGCAACCTGTGTTAACCTCTAACTAAAAAACAG
TGCATAAAGTACACAGAAAGGAG
>TRINITY_DN44161_c0_g2_i2 from sample A7 / Example unspliced isoform:GCAAGTCTCAATGGCTTCACTGACCTAGAATCCAATATTTAATAAACTATGATTTATTTTTTTCAAGGTCCCCATTTCATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCA
GTACTGGACCATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAG
TTAGGAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAGGAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACCCTTCTGTGTTTTATTGTTCATTGCGGTGCTCT
TACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCATGTGGGTGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCTCAGCGGCACTATATCTCCCAGCGTTGGCAAAT
TGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTACTTGCGAGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATATTTCAAGCAATTCATTGAAAGGAGTGATTCCA
CCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTGCGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTTGAGTTCCCTGCAATAGTACCCACGTCCGGTGA
CGATGATAATGCCACTAATGTTAAACAAGTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTGGCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGA
ACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGG
GTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCTATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGgttagtacttccaaaattaggtgaatttttttattgatgccatagtggttgtccatga
tgtatggctgcttataaggttttttatttcttcagACTGCAAACGACCTACACCAC
Intron 2 GCAAATCTCC ... TGGATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.62 | 17 | 1 | 9 |
| A2 | 25 | 6 | 2.3 | 2 |
| A3 | 18.48 | 13.3 | 0 | 3 |
| A4 | 8.33 | 11 | 0.3 | 1 |
| A5 | 11.11 | 8 | 0.3 | 1 |
| A6 | 14.29 | 6 | 0 | 1 |
| A7 | 20 | 16 | 0.8 | 4 |
| A8 | 29.63 | 19 | 2.8 | 8 |
| A9 | 26.28 | 25.3 | 0.5 | 9 |
| A10 | 34 | 17.5 | 3.5 | 9 |
>TRINITY_DN111888_c0_g1_i5 from sample A1 / Example spliced isoformATGGCTTCACTGACCTAGAATCCAATATTTAATAAACTATGATTTATTTTTTTCAAGGTCCCCATTTCATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCAGTACTGGACC
ATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAGGAGTTT
CAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACCCTTCTGTGTTTTATTGTTCATTGCGGTGCTCTTACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCATGTGGG
TGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCTCAGCGGCACTATATCTCCCAGCGTTGGCAAATTGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTACTTGCG
AGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATATTTCAAGCAATTCATTGAAAGGAGTGATTCCACCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTGCGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCA
ATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTTGAGTTCCCTGCAATAGTACCCACGTCCGGTGACGATGATAATGCCACTAATGTTAAACAAGTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTG
GCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGAACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCAT
TGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGGGTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCT
ATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTAAACTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGTGATATAAAGTCGAGCAATATACTTATTGATGAAAGGCTGGAG
GCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGC
>TRINITY_DN111888_c0_g1_i6 from sample A1 / Example unspliced isoform:ATGGCTTCACTGACCTAGAATCCAATATTTAATAAACTATGATTTATTTTTTTCAAGGTCCCCATTTCATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCAGTACTGGACC
ATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAGGAGTTT
CAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACCCTTCTGTGTTTTATTGTTCATTGCGGTGCTCTTACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCATGTGGG
TGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCTCAGCGGCACTATATCTCCCAGCGTTGGCAAATTGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTACTTGCG
AGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATATTTCAAGCAATTCATTGAAAGGAGTGATTCCACCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTGCGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCA
ATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTTGAGTTCCCTGCAATAGTACCCACGTCCGGTGACGATGATAATGCCACTAATGTTAAACAAGgcaaatctccaaaatcccattcctaagtgatattttatgcatctagttcatttgatgcaatttgaaatctg
cattctttctatcaatccagtaaatcttcataacgcaaggaaagcttacataaggaaaaactgttgtagaagcattatgtttatgaataaactttaagactgattatttggaactcactggatctcagTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTGG
CTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGAACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCATT
GGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGGGTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCTA
TGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTAAACTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGTGATATAAAGTCGAGCAATATACTTATTGATGAAAGGCTGGAGG
CACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGC
Intron 3 GTGAGAAATA ... CTCCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.73 | 13 | 7 | 4 |
| A2 | 40 | 6 | 1 | 7 |
| A3 | 25.71 | 13 | 7 | 2 |
| A4 | 20 | 12 | 3 | 3 |
| A5 | 23.08 | 10 | 5 | 1 |
| A6 | 33.33 | 5 | 0 | 5 |
| A7 | 29.63 | 19 | 7 | 9 |
| A8 | 33.33 | 7 | 0 | 7 |
| A9 | 21.95 | 16 | 1 | 8 |
| A10 | 26.83 | 15 | 7 | 4 |
>TRINITY_DN42531_c0_g1_i3 from sample A10 / Example spliced isoformATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCAGTACTGGACCATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCA
TTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAGGAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACC
CTTCTGTGTTTTATTGTTCATTGCGGTGCTCTTACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCATGTGGGTGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCT
CAGCGGCACTATATCTCCCAGCGTTGGCAAATTGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTACTTGCGAGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATA
TTTCAAGCAATTCATTGAAAGGAGTGATTCCACCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTGCGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTT
GAGTTCCCTGCAATAGTACCCACGTCCGGTGACGATGATAATGCCACTAATGTTAAACAAGTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTGGCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAA
GGAATACACAAAGATAGAACAATTGCCCAAGAACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGA
AAATTGAGAAGTGTGGTGTAGCATCCAATCGGGTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCTATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTA
AACTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGTGATATAAAGTCGAGCAATATACTTATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGTTGT
TGCAGGCACACTTGGATACTTAGCTCCAGAGTACATGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCCTTCCTTTATCAACGAGGGAGTGAATGTGGTAGGATGGGTGAACACACTCATGAGAGAGAGTAAATTGGAGGAGA
TTATTGATCCAAGATGTGGTGGCGTACCCAGGGATTGTATTGAGGTAGTTCTTGAAATTGCAGCCAGGTGCATAGCACCAAACCCTGAAGACCGGCCAACCATGAACAGAGTAGTGCAGATGCTAGAGGAAGAGACTATGACTCCCAACTCAAGGGAATTCTGCCCAATAATGAACGCAGTATTTCAAATGCTAGAAGAA
GAGACTATGTCTACCTGCCATAGTGAATTTTATGACTCATGCCCTGATGAAAAATTAATTCAATTCGACTGCTAGATGTAGAGATAATTTAAGGTAATAATGCTTTCCATTTTTACAGGGATTGTTTTCATCGAGGATATATTGTTTGGGCCTTTTAGTAGCCCTCCCATTTGTTTTTCTTTAGCCATTTGTATATAAAC
CATAATGAGATGTAGTAATTTTTTATGACAGTAGAGCAGATCCCGATCATCAATGCTAAACAAACTAAATTGTATGTGAACTATAATCAGCAGCAAGCTGTATGGATGAATTCAAATCAAAGATTGTACAAGTGAGCTATTTCAGTTCAACAACAAAGCACTACC
>TRINITY_DN42531_c0_g1_i4 from sample A10 / Example unspliced isoform:ATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCAGTACTGGACCATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCA
TTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAGGAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACC
CTTCTGTGTTTTATTGTTCATTGCGGTGCTCTTACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCATGTGGGTGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCT
CAGCGGCACTATATCTCCCAGCGTTGGCAAATTGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTgtgagaaataccccatttccctgtcttgatttgtctctgttttcattagtgtacaaggtcaaaacttgttaaatgca
caggaaagttctgctgaaaatatggccctgctgtcggccactgccccttttggttttgggctgggcagcagtttatgcttatattttttagtcaatttcatttgaagagtacttacatcatattcagcaccagatagatcattatggaatgccaggtaggatccatacaattatgctaacggtgtgttctcactctgtta
gcattcataatgagcttcaatgcctccatgcagGTACTTGCGAGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATATTTCAAGCAATTCATTGAAAGGAGTGATTCCACCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTG
CGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTTTCAGCAATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTTGAGTTCCCTGCAATAGTACCCACGTCCGGTGACGATGATAATGCCACTAATGTTAAACAAGTAGGGCATACTAGAACATTGACACGGTAC
TTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTGGCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGAACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGA
AATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGGGTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATT
TGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCTATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTAAACTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGT
GATATAAAGTCGAGCAATATACTTATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGTTGTTGCAGGCACACTTGGATACTTAGCTCCAGAGTACATGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATT
GCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCCTTCCTTTATCAACGAGGGAGTGAATGTGGTAGGATGGGTGAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTATTGATCCAAGATGTGGTGGCGTACCCAGGGATTGTATTGAGGTAGTTCTTGAAATTGCAGCCAGGTGCATAGCACCAAACCCTGAAG
ACCGGCCAACCATGAACAGAGTAGTGCAGATGCTAGAGGAAGAGACTATGACTCCCAACTCAAGGGAATTCTGCCCAATAATGAACGCAGTATTTCAAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAATTTTATGACTCATGCCCTGATGAAAAATTAATTCAATTCGACTGCTAGATGTAGAGATAATTT
AAGGTAATAATGCTTTCCATTTTTACAGGGATTGTTTTCATCGAGGATATATTGTTTGGGCCTTTTAGTAGCCCTCCCATTTGTTTTTCTTTAGCCATTTGTATATAAACCATAATGAGATGTAGTAATTTTTTATGACAGTAGAGCAGATCCCGATCATCAATGCTAAACAAACTAAATTGTATGTGAACTATAATCAG
CAGCAAGCTGTATGGATGAATTCAAATCAAAGATTGTACAAGTGAGCTATTTCAGTTCAACAACAAAGCACTACC
Intron 4 GTATGTCCCG ... GGATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 15 | 6 | 0 |
| A2 | 6.25 | 15 | 1 | 0 |
| A3 | 12.5 | 14 | 2 | 0 |
| A4 | 29.17 | 17 | 7 | 4 |
| A5 | 26.32 | 14 | 5 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 5.56 | 17 | 1 | 0 |
| A8 | 30.77 | 9 | 4 | 1 |
| A9 | 17.86 | 23 | 5 | 0 |
| A10 | 19.23 | 21 | 5 | 0 |
>TRINITY_DN94097_c0_g1_i5 from sample A4 / Example spliced isoformGTCTCAATGGCTTCACTGACCTAGAATCCAATATTTAATAAACTATGATTTATTTTTTTCAAGGTCCCCATTTCATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCAGTAC
TGGACCATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAG
GAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACCCTTCTGTGTTTTATTGTTCATTGCGGTGCTCTTACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCA
TGTGGGTGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCTCAGCGGCACTATATCTCCCAGCGTTGGCAAATTGAACAAGCTGCGCAGATTAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTA
CTTGCGAGATAACTACCTGGAAGGCGAAATTCCTGCAGAGCTGGGTAACCTGTCAAATCTTGTTATCTTGGATATTTCAAGCAATTCATTGAAAGGAGTGATTCCACCTTCTATTGGTGAATTAGGCATGCTGAGATTCTTAAACCTATCCACAAACTTCTTTGCGGGAGAGATCCCTAAAACTGGAGTGTTAGGAGGTT
TCAGCAATCACTCATTTATAGGCAACTTGGACTTATGTGGCCTGCAAGTTGAAAAGCTTTGCAAAGATATGCTTGAGTTCCCTGCAATAGTACCCACGTCCGGTGACGATGATAATGCCACTAATGTTAAACAAGTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATG
GGAGTGGCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGAACCAAACAGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGA
CATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGGGTATTTGAAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGC
TTATCTATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTAAACTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGCCGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGTGATATAAAGTCGAGCAATATACTTATTGATGAAAGG
CTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGTTGTTGCAGGCACACTTGGATACTTAGCTCCAGAGTACATGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCC
TTCCTTTATCAACGAGGGAGTGAATGTGGTAGGATGGGTGAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTATTGATCCAAGATGTGGTGGCGTACCCAGGGATTGTATTGAGGTAGTTCTTGAAATTGCAGCCAGGTGCATAGCACCAAACCCTGAAGACCGGCCAACCATGAACAGAGTAGTGCAGATGCTAG
AGGAAGAGACTATGACTCCCAACTCAAGGGAATTCTGCCCAATAATGAACGCAGTATTTCAAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAATTTTATGACTCATGCCCTG
>TRINITY_DN94097_c0_g1_i4 from sample A4 / Example unspliced isoform:GTCTCAATGGCTTCACTGACCTAGAATCCAATATTTAATAAACTATGATTTATTTTTTTCAAGGTCCCCATTTCATTATCTTCACTTATGCTCTGACCTGCCCAACTCTCAAGTATGGAGAAATGGTACTGTGGGTACTGCTGAAAATACAAGAAATCCTCTGAAAGTAACAACAGTTATGGGATTGAGTTTCTCAGTAC
TGGACCATCCGGTGCGATGTACTGTTATTATTACTCATCGATCAATAATGGCACTTGGGTCGCCTTGACTTCCATTTACAATTTCATCAATCAGGGACCCAGACACTTATCGATGGGGTTTCATAGATGACTGTATGAAAGCATGTTGATTTGGGCAGTTACTCTGTGGTTCATCCTCTGTAACATGAAAATGCAGTTAG
GAGTTTCAGATACAAGAGCAAACATGTACCGGGTTCATGTTCAGGGACCTGCTCTGTGCTTGCTCGCTGCAACCCTTCTGTGTTTTATTGTTCATTGCGGTGCTCTTACACCAGATGGTAAGGCATTGCTAGAGTTTAAAGCTCAACTCAATGGCACACGGAGTTTCCTCAGCAACTGGAATGAATCAGATACGACACCA
TGTGGGTGGGCTGGAGTAGTCTGCAATGCCCTCACCAAAAGAGTTACCGCATTAAACCTACCATATCTGCTCCTCAGCGGCACTATATCTCCCAGCGTTGGCAAATTGAACAAGCTGCGCAGATTgtatgtcccgattcaacatctgcatcggaaattgcttacattttggccctttcagaattcccttgagttatgtca
aattttcggcttaggtaataatgtgtattgtggatctgcagAGCTCTTCATGAGAACAGGTTGCATGGACATATACCTCCAGAGATCGGCAATTGCACAGAGTTGAGAGCATTGTGAGAAATACCCCATTTCC
Intron 5 GTATGTGGGC ... TCCAAAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 4 | 1 | 4 |
| A2 | 11.11 | 8 | 0 | 1 |
| A3 | 12 | 22 | 0 | 3 |
| A4 | 20 | 12 | 0 | 3 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 3.7 | 26 | 0 | 1 |
| A7 | 10.64 | 42 | 0 | 5 |
| A8 | 10.81 | 66 | 0 | 8 |
| A9 | 7.94 | 58 | 0 | 5 |
| A10 | 8.33 | 22 | 0 | 2 |
>TRINITY_DN39839_c0_g1_i8 from sample A8 / Example spliced isoformTAATGCCACTAATGTTAAACAAGGCAAATCTCCAAAATCCCATTCCTAAGTGATATTTTATGCATCTAGTTCATTTGATGCAATTTGAAATCTGCATTCTTTCTATCAATCCAGTAAATCTTCATAACGCAAGGAAAGCTTACATAAGGAAAAACTGTTGTAGAAGCATTATGTTTATGAATAAACTTTAAGACTGATTA
TTTGGAACTCACTGGATCTCAGTAGGGCATACTAGAACATTGACACGGTACTTGAATGGGCTACTTATTGGAGCAATGGTTACAATGGGAGTGGCTCTTTCTGTGCTTCTTGTCTTCTTGTGGGTCTGCTTTTTATCTAAGAAAGGAGTCAAAGAGGAAAAGGAATACACAAAGATAGAACAATTGCCCAAGAACCAAAC
AGATACGCAGCTTGTTACATTCCATGGAGATTTGCCATACACATCTGAGGAAATTATAAAAAGGATTGAGCTGCTTGATGACGCTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGTTGGTGATGGATAATAACAGCTTATTTGCAGTGAAGAAAATTGAGAAGTGTGGTGTAGCATCCAATCGGGTATTTG
AAAGGGAGTTGGAGATTTTGGGAAGCATTAAACACAGGAATCTTGTTAATTTGCGGGGTTATTGCAAATTCCCATCAGCTAAAATGCTTATCTATGATTTCTTACTGATGGGAAGCTTAGATGAATTTCTCCATGACTGCAAACGACCTACACCACCTTTAAACTGGATGGCCCGATTGAAGATAGCACTTGGAGCAGGC
CGAGGCCTGGCCTATTTGCATCATGACTGTGACCCTAGAATTGTCCACCGTGATATAAAGTCGAGCAATATACTTATTGATGAAAGGCTGGAGGCACATGTATCAGACTTTGGTCTTGCAAAGCTCTTGGAAGATGGTGAAACACATGTAACCACCGTTGTTGCAGGCACACTTGGATACTTAGCTCCAGAGTACATGCA
AAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAGACCAAACGATCCTTCCTTTATCAACGAGGGAGTGAATGTGGTAGGATGGGTGAACACACTCATGAGAGAGAGTAAATTGGAGGAGATTATTGATCCAAGATGTGGTGGCGTACCCAGGGATTGTA
TTGAGGTAGTTCTTGAAATTGCAGCCAGGTGCATAGCACCAAACCCTGAAGACCGGCCAACCATGAACAGAGTAGTGCAGATGCTAGAGGAAGAGACTATGACTCCCAACTCAAGGGAATTCTGCCCAATAATGAACGCAGTATTTCAAATGCTAGAAGAAGAGACTATGTCTACCTGCCATAGTGAATTTTATGACTCA
TGCCCTGATGAAAAATTAATTCAATTCGACTGCTAGATGTAGAGATAATTTAAGGTAATAATGCTTTCCATTTTTACAGGGATTGTTTTCATCGAGGATATATTGTTTGGGCCTTTTAGTAGCCCTCCCATTTGTTTTTCTTTAGCCATTTGTATATAAACCATAATGAGATGTAGTAATTTTTTATGACAGTAGAGCAG
ATCCCGATCATCAATGCTAAACAAACTAAATTGTATGTGAACTATAATCAGCAGCAAGCTGTATGGATGAATTCAAATCAAAGATTGTACAAGTGAGCTATTTCAGTTCAACAACAAAGCACTACCAATGAATGTTTATTAGGGTGCGTTTCCACACCTTTGCAACCTGTGTTAACCTCTAACTAAAAAACAGTGCATAA
AGTACACAGAAAGGAGAATCAACTAC
>TRINITY_DN39839_c0_g1_i5 from sample A8 / Example unspliced isoform:CACACTTGGATACTTAGCTCCAGgtatgtgggcctttcttttgggcatgaccccaggtttatccatatttttaatatgcataagaatactgatttattctccatttccaaaatagAGTACATGCAAAGTGGGAGAGCAACAGAGAAATCAGATGTGTACAGCTTTGGAGTAGTATTGCTAGAGTTGCTTAGTGGAAAAAG
ACCAAACGATCCTTCCTTTATCAACGAGGGAGTGAATGTGGTAGGATGGGTGAGTCAAAACCCATATTGCCTTGTGTTTTTAAATGCGAATTTGTGTTTCTCATGAATCTTATTATATATGCACAGGAATTTTTTACTGTAATATCTTATCTCAAAACTTCCTTGATACTTGATATTTACTTGGTCTAGAACATTGCGAC
TAGCTGTGGAGTGCTACCTATTCTGAAGTTTTCTTATGGCCATTTTTGCTTGACCTATTCTGAAGTTTTCTCATGGCCATCTTTGCTTGACCTATTCTGAAGTT