sp|Q9M041|BH140_ARATH ----> Transcription factor bHLH140
Intron 1 GTAAAAAGTG ... TGGAATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46 | 4.8 | 5 | 3 |
| A2 | 60 | 2 | 2 | 4 |
| A3 | 51.54 | 3 | 3 | 3.4 |
| A4 | 30.77 | 9 | 1 | 7 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 100 | 0 | 0 | 1 |
| A7 | 42.86 | 2 | 1 | 2 |
| A8 | 60 | 1 | 0 | 3 |
| A9 | 33.33 | 14 | 0 | 14 |
| A10 | 100 | 0 | 4 | 2 |
>TRINITY_DN115927_c0_g1_i5 from sample A1 / Example spliced isoformGTTTTTCTGAAGAATTCGGGTGTATTTCTTAGAATTTAAATCTGATTTACTTGAATTTTTAAAGAATTCAAGCAAGAAGTAGAAAACCAAAGTGAAAAGAATTAATGTTGGTGCGGAGTAATATTTGATGATTTTCAGAAAATATGAAAGGCGGAATGTAGAAAAGGCAACAAATTGCAGCCTACTCTCCACAACAGATT
ATAGTAGAGAGAAAAAAAATACATCATAGTCAAGATGAATACCTGCATGTTGAAAAGTAAGATGACTTTATGGCTTTTTGTTGATTCCCTGATGATGGGTCCATTGAAATGTTGGGACGTTTCAAAACTCCTAGACACTGTAATTTCCAGAATTTGGGCATAATAAAAGTAAGAATATGCCTAATGGCTTGAGGGCAGAA
GTTGTAAATATCACTGTTTATGTTTTGAACAGATCATTGATCGAAGTACTGCAAGGGAAAACTCCAGAAGAGGCGGTATCCAGGTAGTAAGGAAGACATTTAACATTTGCGAATATTTGGATGTACAACTTACGCACACATTCAAAAAGAAAAAGGATGCAAGTTGGATGACACAGATTTGACGAGTCTGCAGATGCAAC
AAAGGAGGAGATGTGCAACAGTGGCAACAATGGTATTGAGCTTCCAATTAATTCCTTCTCAGTTGTTTCTGAAGAGGAAAATTCAATGATTACCTATAAATGAAGAGAGAGAAATGGTAGAAGAGGAGAAAATGTAGCAAAAATATGAAGATGAGGCAGAAGAAACTACACAAAAAAGTCCTGACGAGAATTGCAGAAAA
GAAGCAAGAGAAGCAGGCGCTTGAAAGCAGGGGGTGGCGGTGTCAATGCAGCCATATTCAAGGCTGCAGGCCCGGAATTTGAGGTTGCTACGAAAGAATATGCTAAAACTCTCAGCACTGGGAGTGCTCTTGTTGTTCCACTTCCTCCAAGCTCTCCATTATACGAAAAAGAAGGGGTCACCCATGTGATACATGTTGTT
GGTCCAAACATGAATCCACAAAGACCAAATTGTGTTGCAGGAGACTATGTAAAAGGATGCAAAGTTCTACGTGACACTTATTCATCTCTTTTTGAATGTTTTTCCTCCATACTTAAAACACGAGAAAGATTGGTTCCTAATCGAGAAATCCCAGAGTCTCTGTATTCTGAAAATAAAGTTCAAGTTGGGGATAGTACTCA
AATAAAGGAAACTAAAGATTCTCCCACCAAAAATGCTTTTTCAGTGCTGATGCAAGCTTCCAGAAAAAATGGTGTATATGGATCTGATAAAAAATCAAAACAACAAGACTTGGCTGGTCCCGAGGTGAATAAGAAACGCAAGATTGACACCATGGAACATCTTCCTCCAAATATTGAACTCGAGCTGCTAGATGAAAATG
CAGGGCTCAATTTGGATCCTACTGGTGATAATTTAGCAGGATACAAAAACAATGCTCAAAGCGCAATCACAGTCAAAGGGCAAAATGTAAATCGGATTGATGGGAAAAATGACAAGGGCACAACGTGGGGAGCCTGGGCACAAGCTTTGCATAAGACTGCTTTACATCCCGAACAACATGAGAACACAGTCCTCGAATGC
ATGGATTCCGTAATTGTACTTCCTGATCTTTATCCTAAGGCAAAGAAACATGTACTCGTAGTAGCAAGGTTAGATGGGCTTGACAGTCTAGCAGATGTACAGAAAGAACACATTCCCCTCTTAAGACACATTCATTCTGTTGGAGAGAAATGGGTAGATTCTTTCCTGCAGGAAGATCCATCTATGATCTTCCGCCTTGG
CTATCATTCGGTTCCTTCAATGCGACAATTACATCTACATGTGATTAGCCAGGATTTTGACTCTCTGCACCTGAAAAACAAGAAGCATTGGAACTCTTTCACAACTAAATTCTTCCGGGATTCTGTTGAGGTACTTGAAGAGGTTGAGAAGGTTGGAAAGGTGGAAATAAATTATGATAAAAATATTCTTTCCATGGAGC
TGCGTTGTCATCGTTGTAGGAGTGCTCATCCTAATATTCCACGCCTTAAAAGCCATATTTCTAATTGTAAAGCTCCTTTTCCCTCTTCGCTTTCTTGGGGTCGACACCTGATCTCATCTCCGTCTAGGGAAGCTTGTTTGAAGACAATTTAAAGACATGACTGACATCATTGCGTAGGTTTTTCTTCGGGTGGTGGGTTC
AAGGCAAACTACATATTCTGTTCAGAAAATGGAATTTGAATGATACTTTTGTATTGCAATGCAAGAGTAGCTTGCTAGGGTCATTTTGAAGTAATATCTTAACCTTTTTTTTTCTCTATTATATTTAATAAACTCAGAGCCATAATGCGTGA
>TRINITY_DN115927_c0_g1_i1 from sample A1 / Example unspliced isoform:GTTTTTCTGAAGAATTCGGGTGTATTTCTTAGAATTTAAATCTGATTTACTTGAATTTTTAAAGAATTCAAGCAAGAAGTAGAAAACCAAAGTGAAAAGAATTAATGTTGGTGCGGAGTAATATTTGATGATTTTCAGAAAATATGAAAGGCGGAATGTAGAAAAGGCAACAAATTGCAGCCTACTCTCCACAACAGATT
ATAGTAGAGAGAAAAAAAATACATCATAGTCAAGATGAATACCTGCATGTTGAAAAGTAAGATGACTTTATGGCTTTTTGTTGATTCCCTGATGATGGGTCCATTGAAATGTTGGGACGTTTCAAAACTCCTAGACACTGTAATTTCCAGAATTTGGGCATAATAAAAGTAAGAATATGCCTAATGGCTTGAGGGCAGAA
GTTGTAAATATCACTGTTTATGTTTTGAACAGATCATTGATCGAAGTACTGCAAGGGAAAACTCCAGAAGAGGCGGTATCCAGGTAGTAAGGAAGACATTTAACATTTGCGAATATTTGGATGTACAACTTACGCACACATTCAAAAAGAAAAAGGATTCAAGTTGGATGACACAGgtaaaaagtgcatatttatgggct
atagtgaaacatcaaaggagcttataaactgtatcctgcttatgattaaattcttgttaagttggaatgtagATTTGACGAGTCTGCAGATGCAACAAAGGAGGAGATGTGCAACAGTGGCAACAATGGTATTGAGCTTCCAATTAATTCCTTCTCAGTTGTTTCTGAAGAGGAAAATTCAATGATTACCTATAAATGAA
GAGAGAGAAATGGTAGAAGAGGAGAAAATGTAGCAAAAATATGAAGATGAGGCAGAAGAAACTACACAAAAAAGTCCTGACGAGAATTGCAGAAAAGAAGCAAGAGAAGCAGGCGCTTGAAAGCAGGGGGTGGCGGTGTCAATGCAGCCATATTCAAGGCTGCAGGCCCGGAATTTGAGGTTGCTACGAAAGAATATGCT
AAAACTCTCAGCACTGGGAGTGCTCTTGTTGTTCCACTTCCTCCAAGCTCTCCATTATACGAAAAAGAAGGGGTCACCCATGTGATACATGTTGTTGGTCCAAACATGAATCCACAAAGACCAAATTGTGTTGCAGGAGACTATGTAAAAGGATGCAAAGTTCTACGTGACACTTATTCATCTCTTTTTGAATGTTTTTC
CTCCATACTTAAAACACGAGAAAGATTGGTTCCTAATCGAGAAATCCCAGAGTCTCTGTATTCTGAAAATAAAGTTCAAGTTGGGGATAGTACTCAAATAAAGGAAACTAAAGATTCTCCCACCAAAAATGCTTTTTCAGTGCTGATGCAAGCTTCCAGAAAAAATGGTGTATATGGATCTGATAAAAAATCAAAACAAC
AAGACTTGGCTGGTCCCGAGGTGAATAAGAAACGCAAGATTGACACCATGGAACATCTTCCTCCAAATATTGAACTCGAGCTGCTAGATGAAAATGCAGGGCTCAATTTGGATCCTACTGGTGATAATTTAGCAGGATACAAAAACAATGCTCAAAGCGCAATCACAGTCAAAGGGCAAAATGTAAATCGGATTGATGGG
AAAAATGACAAGGGCACAACGTGGGGAGCCTGGGCACAAGCTTTGCATAAGACTGCTTTACATCCCGAACAACATGAGAACACAGTCCTCGAATGCATGGATTCCGTAATTGTACTTCCTGATCTTTATCCTAAGGCAAAGAAACATGTACTCGTAGTAGCAAGGTTAGATGGGCTTGACAGTCTAGCAGATGTACAGAA
AGAACACATTCCCCTCTTAAGACACATTCATTCTGTTGGAGAGAAATGGGTAGATTCTTTCCTGCAGGAAGATCCATCTATGATCTTCCGCCTTGGCTATCATTCGGTTCCTTCAATGCGACAATTACATCTACATGTGATTAGCCAGGATTTTGACTCTCTGCACCTGAAAAACAAGAAGCATTGGAACTCTTTCACAA
CTAAATTCTTCCGGGATTCTGTTGAGGTACTTGAAGAGGTTGAGAAGGTTGGAAAGGTGGAAATAAATTATGATAAAAATATTCTTTCCATGGAGCTGCGTTGTCATCGTTGTAGGAGTGCTCATCCTAATATTCCACGCCTTAAAAGCCATATTTCTAATTGTAAAGCTCCTTTTCCCTCTTCGCTTTCTTGGGGTCGA
CACCTGATCTCATCTCCGTCTAGGGAAGCTTGTTTGAAGACAATTTAAAGACATGACTGACATCATTGCGTAGGTTTTTCTTCGGGTGGTGGGTTCAAGGCAAACTACATATTCTGTTCAGAAAATGGAATTTGAATGATACTTTTGTATTGCAATGCAAGAGTAGCTTGCTAGGGTCATTTTGAAGTAATATCTTAACC
TTTTTTTTTCTCTATTATATTTAATAAACTCAGAGCCATAATGCGTGA
Intron 2 GTGAGATCAT ... CTGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 18 | 8 | 7 |
| A2 | 28.57 | 15 | 2 | 10 |
| A3 | 43.28 | 19 | 16 | 13 |
| A4 | 21.43 | 11 | 1 | 5 |
| A5 | 60 | 1 | 2 | 1 |
| A6 | 21.74 | 18 | 0 | 10 |
| A7 | 23.4 | 36 | 8 | 14 |
| A8 | 34.88 | 14 | 8 | 7 |
| A9 | 29.58 | 25 | 4 | 17 |
| A10 | 27.27 | 16 | 6 | 6 |
>TRINITY_DN45583_c0_g1_i3 from sample A7 / Example spliced isoformGGGGAAGCAATGGAGGAGGGTGTTCTCGATGGTGCCAATGAAATTTCCACTATTGCCCCCTTTTTAGCTTTTGGACTTAATTCACTGGGCGTGTAAGCCTCTACGTTTGCATTAAACAAATCGGTGTAAAGTGAGGCTTTGAGATCACTTCTAATTTGAGGCGCCTAGCAGACGATTAGAAAGGAGACACCAGTTTGAAT
TTTCGCCAATTTTGTTGCTTAGGTTCCGACGCTCCATCGAATGCCGTACTGTGCTTGCTGATGGAGAAACGCAATTTGCCAGAGTGCAAGTATGGAGCAGAGTGCCACCGAAAGAATGAATATCATCTCCTCCAATATAGCCACCCACCCAAGCAGCAGGACGAAAAATCCCCAGGGAATATCAAGCCAACCATGTCTAT
TGAACGCGGTTCGAATTCAGGCAGTGTGAATGGGAAGAATATTATGGTGATTCTAGTAGGGCTTCCTGCCAGTGGGAAGAGTACGTTTTGTCAGAAAGTCCTCGAGGGTGCACGCAGACCTTGGACCAGAATATGCCAGGATATCATCTCCAATGGAAAACGGGGCAGTAAGACCCAGTGCTTGAAATGTGCATCTGATG
CATTGAATAAAGGTGAAAGTGTTATCATTGATCGCTGTAATCTGAAAAAAGATCAGTGGTTTGAGTTTGTAGAGCTTGCAGGACCCCAAACAGAGGTGCATGCAGTTGTGCTTGACTTGCCTACTAAATTATGCATAAGCAGGGCAGTTAAACGTACTGAACACGAGGGAGGCTTGCAGGGAGGGAGAGCTGCACCTGCT
ATCAACCAGATGGTACAAACCAAAAAACCACCTACTTTGAGTGAGGGATTCTCTCGCATCATGTTTTGTCAAACAGAAACTGATGTGGAGAAGGCCATATGTATGTACAAAGAGCTGGGTCCAGATGATGTTCTTCCATCTGGTATGCATGGAGACAAACCTGAAGGCGGTATGTTGCGTTTCTTTAAAAAAGAAAATGA
TTCACAAAACTGTAACTCTAGCAGTAAAAGTATTGAGCTGTTAAAGAGCCACCGTACAAGTCAGAAGAATTCTGAGAAATTGGACACACAAGATATGAGGGAAGTTATTCCATGCATTAAAACTTCATATATGAAGGAAACTGAAGGCAATGCTGTGCACAGCTATGGTTGCAATTTCAGTGGGACATCTTCAAATGACT
CTGTTCAAACCCTTGCCTTTCCATCTATTTCAACTTCCGATTTTCATTTTGACCATGAAAAAGCAGCTAATATAATTTTGGAGAAAGTTTCTGAGTTTTTGGAGAGCCACAAAACTTTAAATTTCAGACTTGTTCTGGTAGACTTGGTTCATGACTCTGATATGCTTTCACGGGTTCGTGCCAAGGCAGCTGAAAAGAGA
TTGGATTCTAAAAAGTTTCTTACATTTGTGGGTGACATCACTAAGCTATATTCAAAAGGGGGCCTAAAGTGTAACATAATTGCGAATGCTGCTAACTGGCGCTTGAAAGCAGGGGGTGGCGGTGTCAATGCAGCCATATTCAAGGCTGCAGGCCCGGAATTTGAGGTTGCTACGAAAGAATATGCTAAAACTCTCAGCAC
TGGGAGTGCTCTTGTTGTTCCACTTCCTCCAAGCTCTCCATTATACGAAAAAGAAGGGGTCACCCATGTGATACATGTTGTTGGTCCAAACATGAATCCACAAAGACCAAATTGTATTGCAGGAGACTATGTAAAAGGATGCAAAGTTCTACGTGACACTTATTCATCTCTTTTTGAATGTTTTTCCTCCATACTTAAAA
CACGAGAAAGATTGGTTCCTAATCGAGAAATCCCAGAGTCTCCGTCTTCTGAAAATAAAGTTCAAGTTGGGGATAGTACTCAAATAAAGGAAACTAAAGATTCTCCCACCAAAAATGCTTTTTCAGTGCTGATGCAAGCTTCCAGAAAAAATGGTGTATATGGATCTGATAAAAAATCAAAACAACAAGACTTGGCTGGT
CCCGAGGTGAATAAGAAACGCAAGATTGACACCATGGAACATCTTCCTCCAAATATTGAACTCGAGCTGCTAGATGAAAATGCAGGGCTCAATTTGGATCCTACTGGTGATAATTTAGCAGGATACAAAAACAATGCTCAAAGCGCAATCACAGTCAAAGGGCAAAATGTAAATCGGATTGATGGGAAAAATGACAAGGG
CACAACGTGGGGAGCCTGGGCACAAGCTTTGCATAAGACTGCTTTACATCCCGAACAACATGAGAACACAGTCCTCGAATGCATGGATTCCGTAATTGTACTTCCTGATCTTTATCCTAAGGCAAAGAAACATGTACTCGTAGTAGCAAGGTTAGATGGGCTTGACAGTCTAGCAGATGTACAGAAAGAACACATTCCCC
TCTTAAGACACATTCATTCTGTTGCAGAGAAATGGGTAGATTCTTTCCTGCAGGAAGATCCATCTATGATCTTCCGCCTTGGCTATCATTCGGTTCCTTCAATGCGACAATTACATCTACATGTGATTAGCCAGGATTTTGACTCTCTGCACCTGAAAAACAAGAAGCATTGGAACTCTTTCACAACTAAATTCTTCCGG
GATTCTGTTGAGGTACTTGAAGAGGTTGAGAAGGTTGGAAAGGTGGAAATAAATTATGATAAAAATATTCTTTCCATGGAGCTGCGTTGTCATCGTTGTAGGAGTGCTCATCCTAATATTCCACGCCTTAAAAGCCATATTTCTAATTGTAAAGCTCCTTTTCCCTCTTCGCTTTCTTGGGGTCGACACCTGATCTCATC
TCCGTCTAGGGAAGCTTGTTTGAAGACAATTTAAAGACATGACTGACATCATTGCGTAGGTTTTTCTTCGGGTGGTGGGTTCAAGGCAAACTACATATTCTGTTCAGAAAATGGAATTTGAATGATACTTTTGTATTGCAATGCAAGAGTAGCTTGCTAGGGTCATTTTGAAGTAATATCTTAACCTTTTTTTTTCTCTA
TTATATTTAATAAACTCAGAGCCATAATGCGTGGAAAACATTTTGCCTCAGCTTTTTGCTTATCTGGTAGCAAAAATAAGATAAATTAATTTACACGAG
>TRINITY_DN45583_c0_g1_i5 from sample A7 / Example unspliced isoform:GGGGAAGCAATGGAGGAGGGTGTTCTCGATGGTGCCAATGAAATTTCCACTATTGCCCCCTTTTTAGCTTTTGGACTTAATTCACTGGGCGTGTAAGCCTCTACGTTTGCATTAAACAAATCGGTGTAAAGTGAGGCTTTGAGATCACTTCTAATTTGAGGCGCCTAGCAGACGATTAGAAAGGAGACACCAGTTTGAAT
TTTCGCCAATTTTGTTGCTTAGGTTCCGACGCTCCATCGAATGCCGTACTGTGCTTGCTGATGGAGAAACGCAATTTGCCAGAGTGCAAGTATGGAGCAGAGTGCCACCGAAAGAATGAATATCATCTCCTCCAATATAGCCACCCACCCAAGCAGCAGGACGAAAAATCCCCAGGGAATATCAAGCCAACCATGTCTAT
TGAACGCGGTTCGAATTCAGGCAGTGTGAATGGGAAGAATATTATGGTGATTCTAGTAGGGCTTCCTGCCAGTGGGAAGAGTACGTTTTGTCAGAAAGTCCTCGAGGGTGCACGCAGACCTTGGACCAGAATATGCCAGGATATCATCTCCAATGGAAAACGGGGCAGTAAGACCCAGTGCTTGAAATGTGCATCTGATG
CATTGAATAAAGGTGAAAGTGTTATCATTGATCGCTGTAATCTGAAAAAAGATCAGTGGTTTGAGTTTGTAGAGCTTGCAGGACCCCAAACAGAGGTGCATGCAGTTGTGCTTGACTTGCCTACTAAATTATGCATAAGCAGGGCAGTTAAACGTACTGAACACGAGGGAGGCTTGCAGGGAGGGAGAGCTGCACCTGCT
ATCAACCAGATGGTACAAACCAAAAAACCACCTACTTTGAGTGAGGGATTCTCTCGCATCATGTTTTGTCAAACAGAAACTGATGTGGAGAAGGCCATATGTATGTACAAAGAGCTGGGTCCAGATGATGTTCTTCCATCTGGTATGCATGGAGACAAACCTGAAGGCGGTATGTTGCGTTTCTTTAAAAAAGAAAATGA
TTCACAAAACTGTAACTCTAGCAGTAAAAGTATTGAGCTGTTAAAGAGCCACCGTACAAGTCAGAAGAATTCTGAGAAATTGGACACACAAGATATGAGGGAAGTTATTCCATGCATTAAAACTTCATATATGAAGGAAACTGAAGGCAATGCTGTGCACAGCTATGGTTGCAATTTCAGTGGGACATCTTCAAATGACT
CTGTTCAAACCCTTGCCTTTCCATCTATTTCAACTTCCGATTTTCATTTTGACCATGAAAAAGCAGCTAATATAATTTTGGAGAAAGTTTCTGAGTTTTTGGAGAGCCACAAAACTTTAAATTTCAGACTTGTTCTGGTAGACTTGGTTCATGACTCTGATATGCTTTCACGGGTTCGTGCCAAGGCAGCTGAAAAGAGA
TTGGATTCTAAAAAGTTTCTTACATTTGTGGGTGACATCACTAAGCTATATTCAAAAGGGGGCCTAAAGTGTAACATAATTGCGAATGCTGCTAACTGgtgagatcattgatcgaagtactgcaagggaaaactccagaagaggcggtatccaggtagtaaggaagacatttaacatttgcgaatatttggatgtacaac
ttacgcacacattcaaaaagaaaaaggattcaagttggatgacacagggtatttatcatatagatgttctttccaaacagttgtcatttacaacgaaatttgatgaagggaatgaagatgagtgtcttcgtgacaaggttgggcatcaacatgggttgttttttgagcagtaattttggctgcatgcagGCGCTTGAAAG
CAGGGGGTGGCGGTGTCAATGCAGCCATATTCAAGGCTGCAGGCCCGGAATTTGAGGTTGCTACGAAAGAATATGCTAAAACTCTCAGCACTGGGAGTGCTCTTGTTGTTCCACTTCCTCCAAGCTCTCCATTATACGAAAAAGAAGGGGTCACCCATGTGATACATGTTGTTGGTCCAAACATGAATCCACAAAGACCA
AATTGTATTGCAGGAGACTATGTAAAAGGATGCAAAGTTCTACGTGACACTTATTCATCTCTTTTTGAATGTTTTTCCTCCATACTTAAAACACGAGAAAGATTGGTTCCTAATCGAGAAATCCCAGAGTCTCCGTCTTCTGAAAATAAAGTTCAAGTTGGGGATAGTACTCAAATAAAGGAAACTAAAGATTCTCCCAC
CAAAAATGCTTTTTCAGTGCTGATGCAAGCTTCCAGAAAAAATGGTGTATATGGATCTGATAAAAAATCAAAACAACAAGACTTGGCTGGTCCCGAGGTGAATAAGAAACGCAAGATTGACACCATGGAACATCTTCCTCCAAATATTGAACTCGAGCTGCTAGATGAAAATGCAGGGCTCAATTTGGATCCTACTGGTG
ATAATTTAGCAGGATACAAAAACAATGCTCAAAGCGCAATCACAGTCAAAGGGCAAAATGTAAATCGGATTGATGGGAAAAATGACAAGGGCACAACGTGGGGAGCCTGGGCACAAGCTTTGCATAAGACTGCTTTACATCCCGAACAACATGAGAACACAGTCCTCGAATGCATGGATTCCGTAATTGTACTTCCTGAT
CTTTATCCTAAGGCAAAGAAACATGTACTCGTAGTAGCAAGGTTAGATGGGCTTGACAGTCTAGCAGATGTACAGAAAGAACACATTCCCCTCTTAAGACACATTCATTCTGTTGCAGAGAAATGGGTAGATTCTTTCCTGCAGGAAGATCCATCTATGATCTTCCGCCTTGGCTATCATTCGGTTCCTTCAATGCGACA
ATTACATCTACATGTGATTAGCCAGGATTTTGACTCTCTGCACCTGAAAAACAAGAAGCATTGGAACTCTTTCACAACTAAATTCTTCCGGGATTCTGTTGAGGTACTTGAAGAGGTTGAGAAGGTTGGAAAGGTGGAAATAAATTATGATAAAAATATTCTTTCCATGGAGCTGCGTTGTCATCGTTGTAGGAGTGCTC
ATCCTAATATTCCACGCCTTAAAAGCCATATTTCTAATTGTAAAGCTCCTTTTCCCTCTTCGCTTTCTTGGGGTCGACACCTGATCTCATCTCCGTCTAGGGAAGCTTGTTTGAAGACAATTTAAAGACATGACTGACATCATTGCGTAGGTTTTTCTTCGGGTGGTGGGTTCAAGGCAAACTACATATTCTGTTCAGAA
AATGGAATTTGAATGATACTTTTGTATTGCAATGCAAGAGTAGCTTGCTAGGGTCATTTTGAAGTAATATCTTAACCTTTTTTTTTCTCTATTATATTTAATAAACTCAGAGCCATAATGCGTGGAAAACATTTTGCCTCAGCTTTTTGCTTATCTGGTAGCAAAAATAAGATAAATTAATTTACACGAG
Intron 3 GTGAGATCAT ... AGAGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 18 | 8 | 10 |
| A2 | 30.23 | 15 | 2 | 11 |
| A3 | 43.28 | 19 | 16 | 13 |
| A4 | 8.33 | 11 | 1 | 1 |
| A5 | 50 | 1 | 2 | 0 |
| A6 | 21.74 | 18 | 0 | 10 |
| A7 | 25 | 36 | 8 | 16 |
| A8 | 33.33 | 14 | 8 | 6 |
| A9 | 28.57 | 25 | 4 | 16 |
| A10 | 33.33 | 16 | 6 | 10 |
>TRINITY_DN42201_c0_g1_i5 from sample A8 / Example spliced isoformAAATCGGTGTAAAGTGAGGCTTTGAGATCACTTCTAATTTGAGGCGCCTAGCGGACGATTAGAAAGGAGAAACCAGTTTGAATTTTCGCCAATTTTGTTGCTTAGGTTCCGACGCTCCATCGAATGCCGTACTGTGCTTGCTGATGGAGAAACGCAATTTGCCAGAGTGCAAGTATGGAGCAGAGTGCCACCGAAAGAAT
GAATATCATCTCCTCCAATATAGCCACCCACCCAAGCAGCAGGACGAAAAATCCCCAGGGAATATCAAGCCAACCATGTCTATTGAACGCGGTTCGAATTCAGGCAGTGTGAATGGGAAGAATATTATGGTGATTCTAGTAGGGCTTCCTGCCAGTGGGAAGAGTACGTTTTGTCAGAAAGTCCTCGAGGGTGCACGCAG
ACCTTGGACCAGAATATGCCAGGATATCATCTCCAATGGAAAACGGGGCAGTAAGACCCAGTGCTTGAAATGTGCATCTGATGCATTGAATAAAGGTGAAAGTGTTATCATTGATCGCTGTAATCTGAAAAAAGATCAGTGGTTTGAGTTTGTAGAGCTTGCAGGACCCCAAACAGAGGTGCATGCAGTTGTGCTTGACT
TGCCTACTAAATTATGCATAAGCAGGGCAGTTAAACGTACTGAACACGAGGGAGGCTTGCAGGGAGGGAGAGCTGCACCTGCTATCAACCAGATGGTACAAACCAAAAAGCCACCTACTTTGAGTGAGGGATTCTCTCGCATCATGTTTTGTCAAACAGAAACTGATGTGGAGAAGGCCATATGTATGTACAAAGAGCTG
GGTCCAGATGATGTTCTTCCATCTGGTATGCATGGAGACAAACCTGAAGGCGGTATGTTGCGTTTCTTTAAAAAAGAAAATGATTCACAAAACTGTAACTCTAGCAGTAAAAGTATTGAGCTGTTAAAGAGCCACCGTACAAGTCAGAAGAATTCTGAGAAATTGGACACACAAGATATGAGGGAAGTTATTCCATGCAT
TAAAACTTCATATATGAAGGAAACTGAAGGCAATGCTGTGCACAGCTATGGTTGCAATTTCAGTGGGACATCTTCAAATGACTCTGTTCAAACCCTTGCCTTTCCATCTATTTCAACTTCCGATTTTCATTTTGACCATGAAAAAGCAGCTAATATAATTTTGGAGAAAGTTTCTGAGTTTTTGGAGAGCCACAAAACTT
TAAATTTCAGACTTGTTCTGGTAGACTTGGTTCATGACTCTGATATGCTTTCACGGGTTCGTGCCAAGGCAGCTGAAAAGAGATTGGATTCTAAAAAGTTTCTTACATTTGTGGGTGACATCACTAAGCTATATTCAAAAGGGGGCCTAAAGTGTAACATAATTGCGAATGCTGCTAACTGGCGCTTGAAAGCAGGGGGT
GGCGGTGTCAATGCAGCCATATTCAAGGCTGCAGGCCCGGAATTTGAGGTTGCTACGAAAGAATATGCTAAAACTCTCAGCACTGGGAGTGCTCTTGTTGTTCCACTTCCTCCAAGCTCTCCATTATACGAAAAAGAAGGGGTCACCCATGTGATACATGTTGTTGGTCCAAACATGAATCCACAAAGACCAAATTGTGT
TGCAGGAGACTATGTAAAAGGATGCAAAGTTCTACGTGACACTTATTCATCTCTTTTTGAATGTTTTTCCTCCATACTTAAAACACGAGAAAGATTGGTTCCTAATCGAGAAATCCCAGAGTCTCCGTCTTCTGAAAATAAAGTTCAAGTTGGGGATAGTACTCAAATAAAGGAAACTAAAGATTCTCCCACCAAAAATG
CTTTTTCAGTGCTGATGCAAGCTTCCAGAAAAAATGGTGTATATGGATCTGATAAAAAATCAAAACAACAAGACTTGGCTGGTCCCGAGGTGAATAAGAAACGCAAGATTGACACCATGGAACATCTTCCTCCAAATATTGAACTCGAGCTGCTAGATGAAAATGCAGGGCTCAATTTGGATCCTACTGGTGATAATTTA
GCAGGATACAAAAACAATGCTCAAAGCGCAATCACAGTCAAAGGGCAAAATGTAAATCGGATTGATGGGAAAAATGACAAGGGCACAACGTGGGGAGCCTGGGCACAAGCTTTGCATAAGACTGCTTTACATCCCGAACAACATGAGAACACAGTCCTCGAATGCATGGATTCCGTAATTGTACTTCCTGATCTTTATCC
TAAGGCAAAGAAACATGTACTCGTAGTAGCAAGGTTAGATGGGCTTGACAGTCTAGCAGATGTACAGAAAGAACACATTCCCCTCTTAAGACACATTCATTCTGTTGCAGAGAAATGGGTAGATTCTTTCCTGCAGGAAGATCCATCTATGATCTTCCGCCTTGGCTATCATTCGGTTCCTTCAATGCGACAATTACATC
TACATGTGATTAGCCAGGATTTTGACTCTCTGCACCTGAAAAACAAGAAGCATTGGAACTCTTTCACAACTAAATTCTTCCGGGATTCTGTTGAGGTACTTGAAGAGGTTGAGAAGGTTGGAAAGGTGGAAATAAATTATGATAAAAATATTCTTTCCATGGAGCTGCGTTGTCATCGTTGTAGGAGTGCTCATCCTAAT
ATTCCACGCCTTAAAAGCCATATTTCTAATTGTAAAGCTCCTTTTCCCTCTTCGCTTTCTTGGGGTCGACACCTGATCTCATCTCCGTCTAGGGAAGCTTGTTTGAAGACAATTTAAAGACATGACTGACATCATTGCGTAGGTTTTTCTTCGGGTGGTGGGTTCAAGGCAAACTACATATTCTGTTCAGAAAATGGAAT
TTGAATGATACTTTTGTATTGCAATGCAAGAGTAGCTTGCTAGGGTCATTTTGAAGTAATATCTTAACCTTTTTTTTTCTCTATTATATTTAATAAACTCAGAGCCATAATGCGTGGAAAACATTTTGCCTCAGCTTTTTGCTTATCTGGTAGCAAAAATAAGATAAATTAATTTACACGAGCAACTTTATTATTACTAT
GATTGCATGGTGGTGAGGTGAAACTTTTTTTCTGTATTTTTAACCATGCATGTCTCATATAGAGGGCTTTTTAATTGCCATATAGAAGCTTATTTAATTTATTAGGGCATTTGTATTAATTGTGTCTAAC
>TRINITY_DN42201_c0_g1_i1 from sample A8 / Example unspliced isoform:AAATCGGTGTAAAGTGAGGCTTTGAGATCACTTCTAATTTGAGGCGCCTAGCGGACGATTAGAAAGGAGAAACCAGTTTGAATTTTCGCCAATTTTGTTGCTTAGGTTCCGACGCTCCATCGAATGCCGTACTGTGCTTGCTGATGGAGAAACGCAATTTGCCAGAGTGCAAGTATGGAGCAGAGTGCCACCGAAAGAAT
GAATATCATCTCCTCCAATATAGCCACCCACCCAAGCAGCAGGACGAAAAATCCCCAGGGAATATCAAGCCAACCATGTCTATTGAACGCGGTTCGAATTCAGGCAGTGTGAATGGGAAGAATATTATGGTGATTCTAGTAGGGCTTCCTGCCAGTGGGAAGAGTACGTTTTGTCAGAAAGTCCTCGAGGGTGCACGCAG
ACCTTGGACCAGAATATGCCAGGATATCATCTCCAATGGAAAACGGGGCAGTAAGACCCAGTGCTTGAAATGTGCATCTGATGCATTGAATAAAGGTGAAAGTGTTATCATTGATCGCTGTAATCTGAAAAAAGATCAGTGGTTTGAGTTTGTAGAGCTTGCAGGACCCCAAACAGAGGTGCATGCAGTTGTGCTTGACT
TGCCTACTAAATTATGCATAAGCAGGGCAGTTAAACGTACTGAACACGAGGGAGGCTTGCAGGGAGGGAGAGCTGCACCTGCTATCAACCAGATGGTACAAACCAAAAAGCCACCTACTTTGAGTGAGGGATTCTCTCGCATCATGTTTTGTCAAACAGAAACTGATGTGGAGAAGGCCATATGTATGTACAAAGAGCTG
GGTCCAGATGATGTTCTTCCATCTGGTATGCATGGAGACAAACCTGAAGGCGGTATGTTGCGTTTCTTTAAAAAAGAAAATGATTCACAAAACTGTAACTCTAGCAGTAAAAGTATTGAGCTGTTAAAGAGCCACCGTACAAGTCAGAAGAATTCTGAGAAATTGGACACACAAGATATGAGGGAAGTTATTCCATGCAT
TAAAACTTCATATATGAAGGAAACTGAAGGCAATGCTGTGCACAGCTATGGTTGCAATTTCAGTGGGACATCTTCAAATGACTCTGTTCAAACCCTTGCCTTTCCATCTATTTCAACTTCCGATTTTCATTTTGACCATGAAAAAGCAGCTAATATAATTTTGGAGAAAGTTTCTGAGTTTTTGGAGAGCCACAAAACTT
TAAATTTCAGACTTGTTCTGGTAGACTTGGTTCATGACTCTGATATGCTTTCACGGGTTCGTGCCAAGGCAGCTGAAAAGAGATTGGATTCTAAAAAGTTTCTTACATTTGTGGGTGACATCACTAAGCTATATTCAAAAGGGGGCCTAAAGTGTAACATAATTGCGAATGCTGCTAACTGgtgagatcattgatcgaag
tactgcaagggaaaactccagaagaggcggtatccaggtagtaaggaagacatttaacatttgcgaatatttggatgtacaacttacgcacacattcaaaaagaaaaaggattcaagttggatgacacaggtaaaaagtgcatatttatgggctatagtgaaacatcaaaggagcttataaactgtatcctgcttatgat
taaattcttgttaagttggaatgtagatttgacgagtctgcagatgcaacaaaggaggagatgtgcaacagtggcaacaatggtattgagcttccaattaattccttctcagttgtttctgaagaggaaaattcaatgattacctataaatgaagagagagaaatggtagaagaggagaaaatgtagcaaaaatatgaag
atgaggcagaagaaactacacaaaaaagtcctaacgagaattgcagaaaagaagcgagagaagcagGCGCTTGAAAGCAGGGGGTGGCGGTGTCAATGCAGCCATATTCAAGGCTGCAGGCCCGGAATTTGAGGTTGCTACGAAAGAATATGCTAAAACTCTCAGCACTGGGAGTGCTCTTGTTGTTCCACTTCCTCCAA
GCTCTCCATTATACGAAAAAGAAGGGGTCACCCATGTGATACATGTTGTTGGTCCAAACATGAATCCACAAAGACCAAATTGTGTTGCAGGAGACTATGTAAAAGGATGCAAAGTTCTACGTGACACTTATTCATCTCTTTTTGAATGTTTTTCCTCCATACTTAAAACACGAGAAAGATTGGTTCCTAATCGAGAAATC
CCAGAGTCTCCGTCTTCTGAAAATAAAGTTCAAGTTGGGGATAGTACTCAAATAAAGGAAACTAAAGATTCTCCCACCAAAAATGCTTTTTCAGTGCTGATGCAAGCTTCCAGAAAAAATGGTGTATATGGATCTGATAAAAAATCAAAACAACAAGACTTGGCTGGTCCCGAGGTGAATAAGAAACGCAAGATTGACAC
CATGGAACATCTTCCTCCAAATATTGAACTCGAGCTGCTAGATGAAAATGCAGGGCTCAATTTGGATCCTACTGGTGATAATTTAGCAGGATACAAAAACAATGCTCAAAGCGCAATCACAGTCAAAGGGCAAAATGTAAATCGGATTGATGGGAAAAATGACAAGGGCACAACGTGGGGAGCCTGGGCACAAGCTTTGC
ATAAGACTGCTTTACATCCCGAACAACATGAGAACACAGTCCTCGAATGCATGGATTCCGTAATTGTACTTCCTGATCTTTATCCTAAGGCAAAGAAACATGTACTCGTAGTAGCAAGGTTAGATGGGCTTGACAGTCTAGCAGATGTACAGAAAGAACACATTCCCCTCTTAAGACACATTCATTCTGTTGCAGAGAAA
TGGGTAGATTCTTTCCTGCAGGAAGATCCATCTATGATCTTCCGCCTTGGCTATCATTCGGTTCCTTCAATGCGACAATTACATCTACATGTGATTAGCCAGGATTTTGACTCTCTGCACCTGAAAAACAAGAAGCATTGGAACTCTTTCACAACTAAATTCTTCCGGGATTCTGTTGAGGTACTTGAAGAGGTTGAGAA
GGTTGGAAAGGTGGAAATAAATTATGATAAAAATATTCTTTCCATGGAGCTGCGTTGTCATCGTTGTAGGAGTGCTCATCCTAATATTCCACGCCTTAAAAGCCATATTTCTAATTGTAAAGCTCCTTTTCCCTCTTCGCTTTCTTGGGGTCGACACCTGATCTCATCTCCGTCTAGGGAAGCTTGTTTGAAGACAATTT
AAAGACATGACTGACATCATTGCGTAGGTTTTTCTTCGGGTGGTGGGTTCAAGGCAAACTACATATTCTGTTCAGAAAATGGAATTTGAATGATACTTTTGTATTGCAATGCAAGAGTAGCTTGCTAGGGTCATTTTGAAGTAATATCTTAACCTTTTTTTTTCTCTATTATATTTAATAAACTCAGAGCCATAATGCGT
GGAAAACATTTTGCCTCAGCTTTTTGCTTATCTGGTAGCAAAAATAAGATAAATTAATTTACACGAGCAACTTTATTATTACTATGATTGCATGGTGGTGAGGTGAAACTTTTTTTCTGTATTTTTAACCATGCATGTCTCATATAGAGGGCTTTTTAATTGCCATATAGAAGCTTATTTAATTTATTAGGGCATTTGTA
TTAATTGTGTCTAAC