sp|Q9SI53|PP147_ARATH ----> Pentatricopeptide repeat-containing protein At2g03880, mitochondrial
Intron 1 GTGAGTTGCC ... GAAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 1 |
| A2 | 71.43 | 1 | 4 | 1 |
| A3 | 26.32 | 7 | 3 | 2 |
| A4 | 33.33 | 3 | 2 | 1 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 46.67 | 8 | 5 | 9 |
| A7 | 45.45 | 12 | 11 | 9 |
| A8 | 56.76 | 8 | 11 | 10 |
| A9 | 80 | 4 | 14 | 18 |
| A10 | 42.86 | 12 | 6 | 12 |
>TRINITY_DN40321_c6_g2_i1 from sample A6 / Example spliced isoformTGCCATGCAGGTTTAGTAGAGGAGGGGTGCAAATACTTTGATCATATGAGTCAAAAATATAACATCACACCTACAATGGAACACTATGGTTGCATCATTGATATACTTGGGCGTGCCGGGCATCTGGATGAAGCACATAATATTATCAAGAATATGCCAATAAAACCTAATGCAAACATATTGGGGTGTTTGCTGGGTTC
CTGTAGAATCCATAACAATACCGAGCTAGGAGAACTTGTGGCAGAATGCATTCTTGAGTTAGACCCGAAAAATGCTGGAACCTATGTGCTGCTATCAAATATCTATGCAGCAGCTCAGAGGTGGGATGACAAGGAAGCACTGCGTAAAACAATGAAAGACAGAGGGGTGAAATCCAAGCCAGGATGCAGTTGGATTGAGG
TCAATAAGCATGTATATGCATTCCTTGTAGGAGATAGTCCCTTAACATAAAGGAAAACACTTGTTACTGGATAAAGTATCCCCAACATGTTATGTTGATCGATGTGGACACATGCAAGGACAAATTCTTTCACCGATGGAGCGAGTAACTGGCAATCACAATGTCGTATCAAATTATTGATTGATGGAGAGAGTGACCAT
GCACTTTGGAACAGGTAAGGCTTATGCATGAGGAGGATGCTGGACTTGGGAACTTGGATGCAACATTGATTTTGCAGAGGCTGAAGGTGAGCCCTCATAAGGAAGTTATTCAAACCAATCTATCCTGGGCCCTGTACTCTAGTATCTCCTTGCTGAGGCATTAAATAGTGGCTAGCACATTTATATTGCATATCCATGCA
ATGAGGGGTTGAAGCCATTTCTGACCTGACACAAAAATTGCAGTTACTGTATCACTTCTTTGAAGACCAAATCGGACCTTTTCAAGTGGTCGGTGACACCTTTTGGGCTTACCAATGCAGCTATACTTTTCAGAGGCTCATCAATGATGTTTTCCAGTCTTTTTGGTAAGCTTGTAGTAGTATACTTGGATGATATTCTT
GTTTATAGCAAACCTTGGGAAAAGCATGTGCATCATGTGCTGGTGCAGGTTGTATTGGATTTGCTCAGTCAAATAAGCTATGAACTAAGATGAAGAAATCATTCTTTGGCTAAACTTCTATCAAGTCCTCTGGATTTGTCATAGACTAACAGGGAGTTCATGTTGATACAGAAAAAGTCAAGGTGCTAAAAGATTGACCC
ACTTTTACTTCAGTTTCAGACATGAAAGGTTTTTCGGGAGGTTGAATTTCTACGTAAAGTTCATCCATCACTAATCTTATATCGCTCTCTTTTTTTATTGCCTGATTAGTTAGAACTTAGAAGACTTTCACATGGG
>TRINITY_DN40321_c6_g2_i2 from sample A6 / Example unspliced isoform:GTGGAAGTGTTTGCTTGGGGCCTGTAGAAAGCATACCAACATAGGACTAGGAGAACTAGCAGCAGAACGTCTCTTTGAGTTGGAACCTGAAAATACTGCACCCTATGTGCTGCTATCAAATATCTATGCAGCAGCTCAGAGGTGGGATGACAAGGAAGCACTGCGTAAAACAATGAAAGACAGAGGGGTGAAATCCAAGC
CAGGATGCAGTTGGATTGAGGTCAATAAGCATGTATATGCATTCCTTGTAGGAGATAGTCCCTTAACATAAAGGAAAACACTTGTTACTGGATAAAGTATCCCCAACATGTTATGTTGATCGATGTGGACACATGCAAGGACAAATTCTTTCACCGATGGAGCGAGTAACTGGCAATCACAATGTCGTATCAAATTATTG
ATTGATGGAGAGAGTGACCATGCACTTTGGAACAGGTAAGGCTTATGCATGAGGAGGATGCTGGACTTGGGAACTTGGATGCAACATTGATTTTGCAGAGGCTGAAGGTGAGCCCTCATAAGGAAGTTATTCAAACCAATCTATgtgagttgcctgggttatatccttttgttattaatcttaaggctaagtctcatgag
aaggttgacagtattggagagaatcagagtattgctgctcatacagttatacttccatatagaaataattaattgtgtccttattttgaattgtatgaaactgcagCCTGGGCCCTGTACTCTAGTATCTCCTTGCTGAGGCATTAAATAGTGGCTAGCACATTTATATTGCATATCCATGCAATGAGGGGTTGAAGCCA
TTTCTGACCTGACACAAAAATTGCAGTTACTGTATCACTTCTTTGAAGACCAAATCGGACCTTTTCAAGTGGTCGGTGACACCTTTTGGGCTTACCAATGCAGCTATACTTTTCAGAGGCTCATCAATGATGTTTTCCAGTCTTTTTGGTAAGCTTGTAGTAGTATACTTGGATGATATTCTTGTTTATAGCAAACCTTG
GGAAAAGCATGTGCATCATGTGCTGGTGCAGGTTGTATTGGATTTGCTCAGTCAAATAAGCTATGAACTAAGATGAAGAAATCATTCTTTGGCTAAACTTCTATCAAGTCCTCTGGATTTGTCATAGACTAACAGGGAGTTCATGTTGATACAGAAAAAGTCAAGGTGCTAAAAGATTGACCCACTTTTACTTCAGTTTC
AGACATGAAAGGTTTTTCGGGAGGTTGAATTTCTACGTAAAGTTCATCCATCACTAATCTTATATCGCTCTCTTTTTTTATTGCCTGATTAGTTAGAACTTAGAAGACTTTCACATGGG
Intron 2 GTGAGCCCTC ... GAAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 2 | 0 | 1 |
| A2 | 60 | 2 | 5 | 1 |
| A3 | 63.64 | 2 | 5 | 2 |
| A4 | 100 | 0 | 2 | 1 |
| A5 | 50 | 1 | 1 | 1 |
| A6 | 44.19 | 12 | 10 | 9 |
| A7 | 46.34 | 11 | 10 | 9 |
| A8 | 47.37 | 15 | 17 | 10 |
| A9 | 56.67 | 13 | 16 | 18 |
| A10 | 48.72 | 10 | 7 | 12 |
>TRINITY_DN40321_c6_g2_i4 from sample A6 / Example spliced isoformTGCCATGCAGGTTTAGTAGAGGAGGGGTGCAAATACTTTGATCATATGAGTCAAAAATATAACATCACACCTACAATGGAACACTATGGTTGCATCATTGATATACTTGGGCGTGCCGGGCATCTGGATGAAGCACATAATATTATCAAGAATATGCCAATAAAACCTAATGCAAACATATTGGGGTGTTTGCTGGGTTC
CTGTAGAATCCATAACAATACCGAGCTAGGAGAACTTGTGGCAGAATGCATTCTTGAGTTAGACCCGAAAAATGCTGGAACCTATGTGCTGCTATCAAATATCTATGCAGCAGCTCAGAGGTGGGATGACAAGGAAGCACTGCGTAAAACAATGAAAGACAGAGGGGTGAAATCCAAGCCAGGATGCAGTTGGATTGAGG
TCAATAAGCATGTATATGCATTCCTTGTAGGAGATAGTCCCTTAACATAAAGGAAAACACTTGTTACTGGATAAAGTATCCCCAACATGTTATGTTGATCGATGTGGACACATGCAAGGACAAATTCTTTCACCGATGGAGCGAGTAACTGGCAATCACAATGTCGTATCAAATTATTGATTGATGGAGAGAGTGACCAT
GCACTTTGGAACAGGTAAGGCTTATGCATGAGGAGGATGCTGGACTTGGGAACTTGGATGCAACATTGATTTTGCAGAGGCTGAAGCCTGGGCCCTGTACTCTAGTATCTCCTTGCTGAGGCATTAAATAGTGGCTAGCACATTTATATTGCATATCCATGCAATGAGGGGTTGAAGCCATTTCTGACCTGACACAAAAA
TTGCAGTTACTGTATCACTTCTTTGAAGACCAAATCGGACCTTTTCAAGTGGTCGGTGACACCTTTTGGGCTTACCAATGCAGCTATACTTTTCAGAGGCTCATCAATGATGTTTTCCAGTCTTTTTGGTAAGCTTGTAGTAGTATACTTGGATGATATTCTTGTTTATAGCAAACCTTGGGAAAAGCATGTGCATCATG
TGCTGGTGCAGGTTGTATTGGATTTGCTCAGTCAAATAAGCTATGAACTAAGATGAAGAAATCATTCTTTGGCTAAACTTCTATCAAGTCCTCTGGATTTGTCATAGACTAACAGGGAGTTCATGTTGATACAGAAAAAGTCAAGGTGCTAAAAGATTGACCCACTTTTACTTCAGTTTCAGACATGAAAGGTTTTTCGG
GAGGTTGAATTTCTACGTAAAGTTCATCCATCACTAATCTTATATCGCTCTCTTTTTTTATTGCCTGATTAGTTAGAACTTAGAAGACTTTCACATGGG
>TRINITY_DN40321_c6_g2_i2 from sample A6 / Example unspliced isoform:GTGGAAGTGTTTGCTTGGGGCCTGTAGAAAGCATACCAACATAGGACTAGGAGAACTAGCAGCAGAACGTCTCTTTGAGTTGGAACCTGAAAATACTGCACCCTATGTGCTGCTATCAAATATCTATGCAGCAGCTCAGAGGTGGGATGACAAGGAAGCACTGCGTAAAACAATGAAAGACAGAGGGGTGAAATCCAAGC
CAGGATGCAGTTGGATTGAGGTCAATAAGCATGTATATGCATTCCTTGTAGGAGATAGTCCCTTAACATAAAGGAAAACACTTGTTACTGGATAAAGTATCCCCAACATGTTATGTTGATCGATGTGGACACATGCAAGGACAAATTCTTTCACCGATGGAGCGAGTAACTGGCAATCACAATGTCGTATCAAATTATTG
ATTGATGGAGAGAGTGACCATGCACTTTGGAACAGGTAAGGCTTATGCATGAGGAGGATGCTGGACTTGGGAACTTGGATGCAACATTGATTTTGCAGAGGCTGAAGgtgagccctcataaggaagttattcaaaccaatctatgtgagttgcctgggttatatccttttgttattaatcttaaggctaagtctcatgag
aaggttgacagtattggagagaatcagagtattgctgctcatacagttatacttccatatagaaataattaattgtgtccttattttgaattgtatgaaactgcagCCTGGGCCCTGTACTCTAGTATCTCCTTGCTGAGGCATTAAATAGTGGCTAGCACATTTATATTGCATATCCATGCAATGAGGGGTTGAAGCCA
TTTCTGACCTGACACAAAAATTGCAGTTACTGTATCACTTCTTTGAAGACCAAATCGGACCTTTTCAAGTGGTCGGTGACACCTTTTGGGCTTACCAATGCAGCTATACTTTTCAGAGGCTCATCAATGATGTTTTCCAGTCTTTTTGGTAAGCTTGTAGTAGTATACTTGGATGATATTCTTGTTTATAGCAAACCTTG
GGAAAAGCATGTGCATCATGTGCTGGTGCAGGTTGTATTGGATTTGCTCAGTCAAATAAGCTATGAACTAAGATGAAGAAATCATTCTTTGGCTAAACTTCTATCAAGTCCTCTGGATTTGTCATAGACTAACAGGGAGTTCATGTTGATACAGAAAAAGTCAAGGTGCTAAAAGATTGACCCACTTTTACTTCAGTTTC
AGACATGAAAGGTTTTTCGGGAGGTTGAATTTCTACGTAAAGTTCATCCATCACTAATCTTATATCGCTCTCTTTTTTTATTGCCTGATTAGTTAGAACTTAGAAGACTTTCACATGGG