NA ----> NA
Intron 1 GTGCGGTTGC ... CTGTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 2 | 0 | 4 |
| A2 | 20 | 4 | 1 | 1 |
| A3 | 88.89 | 1 | 4 | 8 |
| A4 | 100 | 0 | 1 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 36.84 | 12 | 1 | 7 |
| A7 | 61.9 | 8 | 4 | 13 |
| A8 | 32.14 | 19 | 1 | 9 |
| A9 | 42.31 | 15 | 1 | 11 |
| A10 | 31.82 | 15 | 0 | 7 |
>TRINITY_DN33035_c0_g1_i7 from sample A9 / Example spliced isoformAAGCGGTGACATTTCCTTTGTTTTGCGTGCCCCGGAGCCGACGGCGAGCTTAGGCAAGCGTCCTCGGCGTGGGCGTGCTTTGAACAGGGTTCGTCTGCAATGTGAGGTATGGGTTCATGTGAGCGGTGTACCTTTCAGGGCGTGTGAGGTGGCTTTTAATTTCACCCCTTCCGGCTTCGATGCAGTCTCCTTGCTTCTCG
ATTTCGGTTACAGGGGCGTAGGTTCCTGGTAGCCATGGGAGATGGGAGGGTTGCAATGTGAGGTATGGGCGACGGGTTTTAATGCGGTATGGGCGGTGTATGGTCTGGGCGTCTGTACTTCCGTGGGCGTCATGTACGCCATTATTGTTGCTGGGCTAGTGGTTTTTTCCCAGAAGTGGATGGCTGGGTTTTATCAATTC
TCTCAGCAGCGTGGAAGGGTATTTTGAGGAGCCGTTGGCCACTGTTGTTGGAGGTTTTCGTTCCAGGAGTTCTGTGCTATTCTTCAAGTCCTTCTCAGAGGCAGGTTTAGTTTCTATTGCCCGTTCCTGAGGGAGCTTTCACTGGGTTTTTCAGTTTGCTGGAAGTGGGTGCAAGAAGAGGGGGGCAGTTTTCCTTCCCA
ATAGCTTCTCTGCGGCCGAGTTTGGGTTTTTTGTTGTTTCTCCCTCGTCGTTGCGAAAGAAGGTAGAACTGTCAAATTTGGTTGTGGGTGTTTCCTTGTATTGCTATTGTATTATGAAAGGAACATGGAAAAATATAAGAGCATAATTGACAATGTCGAAAGATCCCCTGGCGTACCAGTTAGACATATGCCTACTCAAG
AAGTTGATGTCACTTTGTCCAGAAATCATTTGTTCCGGTTACAAAATTTCCATCATCAAATAGGGGATTTCCTTTTCAATGCACTTGTTGTGTTGCTTCATTTCCGATATACATCATCATAAATAAGAGAAGCAATTGTAAACCATTTTCGTGTTCACCTTGCTGAAGGGGACTCTTCTGCGTTGTTGTCTATGCAAATA
GATCTAGCCATTGAATACTTGTCATATTTGCATGTCATACAAAATATCGACTTGTATCTTACTCAAATGTCTCAATCTGCTTCACAACCAAATGAGCAAAATGTTTATGGACTATGGGGTGATATCTTTTGC
>TRINITY_DN33035_c0_g1_i2 from sample A9 / Example unspliced isoform:AAGCGGTGACATTTCCTTTGTTTTGCGTGCCCCGGAGCCGACGGCGAGCTTAGGCAAGCGTCCTCGGCGTGGGCGTGgtgcggttgctgcggtcagtgttttttgtttttatttatattaatggcatggacgttcggacagtgttgtgatttctgtctacagCTTTGAACAGGGTTCGTCTGCAATGTGAGGTATGGGTT
CATGTGAGCGGTGTACCTTTCAGGGCGTGTGAGGTGGCTTTTAATTTCACCCCTTCCGGCTTCGATGCAGTCTCCTTGCTTCTCGATTTCGGTTACAGGGGCGTAGGTTCCTGGTAGCCATGGGAGATGGGAGGGTTGCAATGTGAGGTATGGGCGACGGGTTTTAATGCGGTATGGGCGGTGTATGGTCTGGGCGTCTG
TACTTCCGTGGGCGTCATGTACGCCATTATTGTTGCTGGGCTAGTGGTTTTTTCCCAGAAGTGGATGGCTGGGTTTTATCAATTCTCTCAGCAGCGTGGAAGGGTATTTTGAGGAGCCGTTGGCCACTGTTGTTGGAGGTTTTCGTTCCAGGAGTTCTGTGCTATTCTTCAAGTCCTTCTCAGAGGCAGGTTTAGTTTCT
ATTGCCCGTTCCTGAGGGAGCTTTCACTGGGTTTTTCAGTTTGCTGGAAGTGGGTGCAAGAAGAGGGGGGCAGTTTTCCTTCCCAATAGCTTCTCTGCGGCCGAGTTTGGGTTTTTTGTTGTTTCTCCCTCGTCGTTGCGAAAGAAGGTAGAACTGTCAAATTTGGTTGTGGGTGTTTCCTTGTATTGCTATTGTATTAT
GAAAGGAACATGGAAAAATATAAGAGCATAATTGACAATGTCGAAAGATCCCCTGGCGTACCAGTTAGACATATGCCTACTCAAGAAGTTGATGTCACTTTGTCCAGAAATCATTTGTTCCGGTTACAAAATTTCCATCATCAAATAGGGGATTTCCTTTTCAATGCACTTGTTGTGTTGCTTCATTTCCGATATACATC
ATCATAAATAAGAGAAGCAATTGTAAACCATTTTCGTGTTCACCTTGCTGAAGGGGACTCTTCTGCGTTGTTGTCTATGCAAATAGATCTAGCCATTGAATACTTGTCATATTTGCATGTCATACAAAATATCGACTTGTATCTTACTCAAATGTCTCAATCTGCTTCACAACCAAATGAGCAAAATGTTTATGGACTAT
GGGGTGATATCTTTTGC
Intron 2 GTCAGTGTTT ... CTGTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 2 | 0 | 4 |
| A2 | 20 | 4 | 1 | 1 |
| A3 | 88.33 | 1 | 4.6 | 7.6 |
| A4 | 100 | 0 | 2 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 36.22 | 12 | 1.8 | 6.8 |
| A7 | 60.32 | 8 | 5.3 | 12.3 |
| A8 | 31.7 | 19 | 1.8 | 8.8 |
| A9 | 42.31 | 15 | 1.8 | 11 |
| A10 | 31.82 | 15 | 0 | 7 |
>TRINITY_DN37838_c0_g1_i4 from sample A6 / Example spliced isoformGCGTCTCATTGGCTGCAGAAGCGGTGACATTTCCTTTGTTTTGCGTGCCCCGGAGCCGACGGCGAGCTTAGGCAAGCGTCCTCGGCGTGGGCGTGGTGCGGTTGCTGCGCTTTGAACAGGGTTCGTCTGCAATGTGAGGTATGGGTTCATGTGAGCGGTGTACCTTTCAGGGCGTGTGAGGTGGCTTTTAATTTCACCCC
TTCCGGCTTCGATGCAGTCTCCTTGCTTCTCGATTTCGGTTACAGGGGCGTAGGTTCCTGGTAGCCATGGGAGATGGGAGGGTTGCAATGTGAGGTATGGGCGACGGGTTTTAATGCGGTATGGGCGGTGTATGGTCTGGGCGTCTGTACTTCCGTGGGCGTCATGTACGCCATTATTGTTGCTGGGCTAGTGGTTTTTT
CCCAGAAGTGGATGGCTGGGTTTTATCAATTCTCTCAGCAGCGTGGAAGGGTATTTTGAGGAGCCGTTGGCCACTGTTGTTGGAGGTTTTCGTTCCAGGAGTTCTGTGCTATTCTTCAAGTCCTTCTCAGAGGCAGGTTTAGTTTCTATTGCCCGTTCCTGAGGGAGCTTTCACTGGGTTTTTCAGTTTGCTGGAAGTGG
GTGCAAGAAGAGGGGGGCAGTTTTCCTTCCCAATAGCTTCTCTGCGGCCGAGTTTGGGTTTTTTGTTGTTTCTCCCTCGTCGTTGCGAAAGAAGGTAGAACTGTCAAATTTGGTTGTGGGTGTTTCCTTGTATTGCTATTGTATTATGAAAGGAACATGGAAAAATATAAGAGCATAATTGACAATGTCGAAAGATCCCC
TGGCGTACCAGTTAGACATATGCCTACTCAAGAAGTTGATGTCACTTTGTCCAGAAATCATTTGTTCCGGTTACAAAATTTCCATCATCAAATAGGGGATTTCCTTTTCAATGCACTTGTTGTGTTGCTTCATTTCCGATATACATCATCATAAATAAGAGAAGCAATTGTAAACCATTTTCGTGTTCACCTTGCTGAAG
GGGACTCTTCTGCGTTGTTGTCTATGCAAATAGATCTAGCCATTGAATACTTGTCATATTTGCATGTCATACAAAATATCGACTTGTATCTTACTCAAATGTCTCAATCTGCTTCACAACCAAATGAGCAAAATGTTTATGGACTATGGGGTGATATCTTTTGC
>TRINITY_DN37838_c0_g1_i3 from sample A6 / Example unspliced isoform:GCGTCTCATTGGCTGCAGAAGCGGTGACATTTCCTTTGTTTTGCGTGCCCCGGAGCCGACGGCGAGCTTAGGCAAGCGTCCTCGGCGTGGGCGTGGTGCGGTTGCTGCGgtcagtgttttttgtttttatttatattaatggcatggacgttcggacagtgttgtgatttctgtctacagCTTTGAACAGGGTTCGTCTG
CAATGTGAGGTATGGGTTCATGTGAGCGGTGTACCTTTCAGGGCGTGTGAGGTGGCTTTTAATTTCACCCCTTCCGGCTTCGATGCAGTCTCCTTGCTTCTCGATTTCGGTTACAGGGGCGTAGGTTCCTGGTAGCCATGGGAGATGGGAGGGTTGCAATGTGAGGTATGGGCGACGGGTTTTAATGCGGTATGGGCGGT
GTATGGTCTGGGCGTCTGTACTTCCGTGGGCGTCATGTACGCCATTATTGTTGCTGGGCTAGTGGTTTTTTCCCAGAAGTGGATGGCTGGGTTTTATCAATTCTCTCAGCAGCGTGGAAGGGTATTTTGAGGAGCCGTTGGCCACTGTTGTTGGAGGTTTTCGTTCCAGGAGTTCTGTGCTATTCTTCAAGTCCTTCTCA
GAGGCAGGTTTAGTTTCTATTGCCCGTTCCTGAGGGAGCTTTCACTGGGTTTTTCAGTTTGCTGGAAGTGGGTGCAAGAAGAGGGGGGCAGTTTTCCTTCCCAATAGCTTCTCTGCGGCCGAGTTTGGGTTTTTTGTTGTTTCTCCCTCGTCGTTGCGAAAGAAGGTACCTGTCTGCTTCTTCGGTTTCGTCCTGGTTGC
ATTTGAAAATGTATGTTTTCTTCGGGGTCTAGATTCCTTTGATTGCTGAGAAAAAAAAACTTCGCTGTTCAGTGTTGTGTTATCAACTTATCTGCCATTACTGTCGACTTCGTCATATCAGAACTCGTTTTTTGTTAATCTTCCGTTGTAAACGTTTTATGTTCGTTGACAGACCCTTCTGTAGGGGAAAATTCCTTACT
ATGAATGTGTTTTCATCCCTGTTATCGTTCCAATGCGAATTTGGCAGACCAAGGTTTTTTTATATAAAAAACTACCCTATTTCAGTAGTTGAATCCTCGAATATTTTACCTGCTTGTTAGGCTGTGCATGTTGCCAATAGCAATATGAGAAATAAGAGTTGGGCAATGAATCCATGGCAGGACTGATGGACTATGCGGGT
GTATAAATATAGTTGAATTTTGCTATTGGCATTATTAATTAATTTTTGAAAAGCCGTTGCAAATTGGTCCTGATTTTCTATAAACGGCTTTCAATAAAGATGTTGAATTGGCATTATTATTGTCAAGAAATATTGCATAGTCTGTTCCCGTCTCTCTTTATATATATATATGTTCCCG