sp|P49730|RIR2_TOBAC ----> Ribonucleoside-diphosphate reductase small chain


Intron 1 GTTTTGTATG ... GGTTTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1100085
A266.96916.321
A369.645914
A460.1545.77
A573.3315.31
A664.571116.324
A775.21228.745
A883.5428.312
A958.121728.719
A1072.78717.720



>TRINITY_DN46601_c0_g1_i5 from sample A7 / Example spliced isoform
CGAAATTATAAATCTATTTTTTCAAATCAAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATATACTAAATCAGCCCAGGCTATCGTCAAAAACACGGTAAGTTTTGAGGTTCAGCCCCGT
ATCGCATCTGGGTGCTTGGGTATCTCTCCGCTCTCGTCAAAACAAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGCCGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTC
TGATGGGATTGTTTTGGAGAA


>TRINITY_DN46601_c0_g1_i14 from sample A7 / Example unspliced isoform:
CGAAATTATAAATCTATTTTTTCAAATCAAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGT
ATCGCATCTGGGTGCTTGGGTATCTCTCCGCTCTCGTCAAAACAAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGgttttgtatgtttccgatcaagtatcctcagatatgggaaatgtataagaaagcagaggctagtttttggactgctaaggatgtagaaagagtcattgca
gcagatgtgcttatgtatgtaggtatgtattaagggattggcgtggttttgcag
CCGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAA
GTTCAAGTCCCTGAGGCGCGTGCATTTTATGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTTTTGTTAGAGACCTACATCAAGGACTCTAAAGAGAAGGATCACTTGTTTCGTGCAATCGAAACTGTTCCCTGTGTAGCCAAGAAAGCAAACTGGTCCCTTCGTTGGATCGATAGCTCTGGAAG
TTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAG
AAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCGTGTGATCTCATTGGGATGAATGCCAAACTCATGAGTCAATATATTGACTTTGTTGCTGATAGATTGTTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAAAATCCATTTATTGGATGGAGTTGATCT
CTCTTCAAGGGAAAACAAATTTCTTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGGCAACACGGATGGAAACCATGTATTTA




Intron 2 GTGAGTATTT ... GAATTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A126.921970
A215.094580
A321.212670
A423.531340
A514.29610
A615.3899180
A723.2376230
A814.7481140
A97.878270
A1018.5757132



>TRINITY_DN46895_c0_g2_i7 from sample A10 / Example spliced isoform
CGGGCGCCACATTCTTTAATTTCAAATTTGAATCCCCCATTTACTCACCGCCCTCCGATTCAAACAGAGACAAACCATCGATCAGAGTCCGCAATGAATATATAGATCCCGTTGTGCAAGCAACTAATGTACCAAATCAGCCCAATTAGTCCTCATTTCGGCAGGTTTATCCTCCATTTCAGAAGCCCCAGTCCCGTTTT
CGCATCTGGGCACTTGGTTATCTCTCTAATCTCGCCAAAACAAGTCTTTTCGTTTCAGGCGAACAATGGTGGTTATTGCCGAAGAGCCTCTTTTGGCAGAGAACCCACAGAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAAGCAGAGGCTAGTTTTTGGACTGCCGAGGAAGCTGAT
CTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCTCTGATGAAAAACACTTCATTAGTCATATTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAACTTGGCTGGCCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTATGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAAT
GTACAGTCTTTTGTTAGAGACCTACATCAAGGACTCTAAAGAGAAGGATCACTTGTTTCGTGCAATCGAAACTGTTCCCTGTGTAGCCAAGAAAGCAAACTGGTCCCTTCGTTGGATCGATAGCTCTGAAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAA
TCTTCTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCATTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCG
TGTGATCTCATTGGGATGAATGCCAAACTCATGAGTCAATATATTGACTTTGTTGCTGATAGATTGTTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAAAATCCATTTGATTGGATGGAGTTGATCTCTCTTCAAGGGAAAACTAATTTCTTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTC
TGGTTTGGACAACATGGAAGGAAACCATGTATTTAGTATCCATGAAGACTTTTGAAACTTTGTATTGATTACTTAGCTTGGTTGATTCATGGAGCACAAGGATTGACCATCGTGCTTGTATAAAGATTTTCGTGGAGATATGGTCTTTTGGGTGGTCCTTTTCTGTGGCTTTTCCCGGGCCAGTTAGCCGGCCCAGTTAG
TTATAAGTTATATTGTGGTGGGAGCTTGGCTCAAATGTTCTGTAGGACTTTGGTCTTAGAATTGATGACTCGTTACAGTGATAGTATTGTATAGTTTGCTTTGATTCAAATCTATTGAATAACAAGTAACTGTTTGTTATTGGGTGA


>TRINITY_DN46895_c0_g2_i4 from sample A10 / Example unspliced isoform:
CGGGCGCCACATTCTTTAATTTCAAATTTGAATCCCCCATTTACTCACCGCCCTCCGATTCAAACAGAGACAAACCATCGATCAGAGTCCGCAATGAATATATAGATCCCGTTGTGCAAGCAACTAATGTACCAAATCAGCCCAATTAGTCCTCATTTCGGCAGGTTTATCCTCCATTTCAGAAGCCCCAGTCCCGTTTT
CGCATCTGGGCACTTGGTTATCTCTCTAATCTCGCCAAAACAAGTCTTTTCGTTTCAGGCGAACAATGGTGGTTATTGCCGAAGAGCCTCTTTTGGCAGAGAACCCACAGAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAAGCAGAGGCTAGTTTTTGGACTGCCGAGGAAGCTGAT
CTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCTCTGATGAAAAACACTTCATTAGTCATATTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAACTTGGCTGGCCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTATGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAAT
GTACAGTCTTTTGTTAGAGACCTACATCAAGGACTCTAAAGAGAAGGATCACTTGTTTCGTGCAATCGAAACTGTTCCCTGTGTAGCCAAGAAAGCAAACTGGTCCCTTCGTTGGATCGATAGCTCTGAAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAA
TCTTCTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCATTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCG
TGTGATCTCATTGGGATGAATGCCAAACTCATGAGTCAATATATTGACTTTGTTGCTGATAGATTGTTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAAAATCCATTTGATTGGATGGAGTTGATCTCTCTTCAgtgagtatttaggtttttattgttgattactgtttccttacccatgtatttacttggaaa
tttgtaattttaattgggctcttttcattgaatttgcag
AGGGAAAACTAATTTCTTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGG




Intron 3 GTGCCAGTCC ... TGGCTCGTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A124.142271
A227.272490
A325.712690
A425.812382
A50400
A614.4383141
A720.5981211
A810.712530
A916.364691
A1018.0659133



>TRINITY_DN46895_c0_g2_i5 from sample A10 / Example spliced isoform
GCCAATTAAAGTTAAGTGACTCTAAAGAGTCAAAACGACTTCCAAACGAAATTATAAATCTATTTTTTCAAATCAAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGC
CCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTCCGCTCTCGTCAAAACAAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAAGC
AGAGGCTAGTTTTTGGACTGCCGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGAGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCTGAGGCGCGTGCATTTTATGGGT
TCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAAGAGAAGCATCACTTGTTTCGTGCAATTGAAACTGTTCCCTGTGTAGCTAACAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTA
GAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTCTGGCTGAAGAAAAGGGGTCTAATGCCAGGCCTAACTTTTTCAAATGAACTCATTTCAAGGGACGAAGGCCTTCATTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAGATCACAAGCTCAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGA
GATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCGTGTGATCTCATTGGGATGAATGCCAAACTCATGAGTCAATATATTGACTTTGTTGCTGATAGATTGTTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAAAATCCATTTGATTGGATGGAGTTGATCTCTCTTCAAGGGAAAACTAATTTCTTTGAGAAAA
GAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGACAACATGGAAGGAAACCATGTATTTAGTATCCATGAAGACTTTTGAAACTTTGTATTGATTACTTAGCTTGGTTGATTCATGGAGCACAAGGATTGACCATCGTGCTTGTATAAAGATTTTCGTGGAGATATGGTCTTTTGGGTGGTCCTTTTCTGT
GGCTTTTCCCGGGCCAGTTAGCCGGCCCAGTTAGTTATAAGTTATATTGTGGTGGGAGCTTGGCTCAAATGTTCTGTAGGACTTTGGTCTTAGAATTGATGACTCATTACAGTGATCGTATTGTATAGTTTGCTTTGATT


>TRINITY_DN46895_c0_g2_i6 from sample A10 / Example unspliced isoform:
GCCAATTAAAGTTAAGTGACTCTAAAGAGTCAAAACGACTTCCAAACGAAATTATAAATCTATTTTTTCAAATCAAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGC
CCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTCCGCTCTCGTCAAAACAAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAGGC
AGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCAGCCGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGAGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTC
TGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCTGAGgtgccagtccagattttagaatgtttatacaatttattctatttattgttgtctctgattttgtggggcagggattgacctacttgatatatttgttgtattaatgagttttgtgatggctcgtagGCGCGTGCATTTT
ATGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCT




Intron 4 GTGTGTTGAT ... TTTCTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A119.3812.542
A210.8216.540
A310.8412.530
A413.669.521
A513.669.530
A69.617688
A714.158.5118
A816.9651.5174
A910.2961122
A1013.2949141



>TRINITY_DN119768_c0_g1_i3 from sample A1 / Example spliced isoform
AAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTC
CGCTCTCGTCAAAACAAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGAGAAAGGTTAAGCACTG
ACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAA
GAGAAGCATCACTTGTTTCGTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGCGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAAC
CTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCC


>TRINITY_DN119768_c0_g1_i2 from sample A1 / Example unspliced isoform:
AAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTC
CGCTCTCGTCAAAACAAGGTAAGATTCGATCCCTTGCAGCTTCATTGAATCTCATTTGGGAAATATTGTAGTCCCAGTACATAACCTATGTGCTTCTGTACTGAATAATTGTTTGTCAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCC
TCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCAGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAG
TCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAAGAGAAGCATCACTTGTTTC
GTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGCGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATT
TCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGgtgtgttgattagtctggggtttggtgttttagatttgattttcaatttgatttgattccattttatttgaaatactggtattaaaatctagttttcttgcagCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTG
ATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCCTGTAATCTTGTTGGGATGAATGCTAAACTCATGAGTCAGTATATTGACTTTGTTGCTGATAGACTATTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTC
TTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGGCAACACGGATGGAAACCATGTATTTAAATTGGATGTACCCTTTTGAAACTTCGTATTGATTACTTAGCTTGGTCTATTCATGGAGCACAAGGATGGCTCATTGTGCTTGTAGAAAGAGTTTGAAAGTTTTTTTTGAAGTTTCAAAAC
CATTTATGTTTCTTCCATTGTATTGATTACTAAACTTGAGTTATTCCTTGAAGGCAAGGATGACCCTTTGTACAAAG




Intron 5 GTAAGTGCTT ... TGTTATTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A122.7778123
A219.3550012
A320.4374019
A416.2262112
A518.923007
A622.374133119
A718.33401190
A818.954926115
A917.91362379
A1024285590



>TRINITY_DN46601_c0_g1_i10 from sample A7 / Example spliced isoform
TCGAGGAGGACAAAAGACCCGGAATCGGGCGCCACATTCTTTAATTTCAAATTTGAATCCCCCATTTACTCACCGCCCTCCGATTCAAACAGAGACAAACCATCGATCAGAGTCCGCAATGAATATATAGATCCCGTTGTGCAAGCAACTAATGTACCAAATCAGCCCAATTAGTCCTCATTTCGGCAGGTTTATCCTCC
ATTTCAGAAGCCCCAGTCCCGTTTTCGCATCTGGGCACTTGGTTATCTCTCTAATCTCGCCAAAACAAGTCTTTTCGTTTCAGACGAACAATGGTGGTTATTGCCGAAGAGCCTCTTTTGGCAGAGAACCCACAGAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAAGCAGAGGCTAG
TTTTTGGACTGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCTCTGATGAAAAACACTTCATTAGTCATATTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAACTTGGCTGGCCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTG
CAATTGAAAATATTCATTCAGAAATGTACAGTCTTTTGTTAGAGACCTACATCAAGGACTCTAAAGAGAAGGATCACTTGTTTCGTGCAATCGAAACTGTTCCCTGTGTAGCCAAGAAAGCAAACTGGTCCCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTAGAGGGTATT
TTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAG
AGAGTTTGTTTGTGATGCTCTCCCGTGTGATCTCATTGGGATGAATGCCAAACTCATGAGTCAATATATTGACTTTGTTGCTGATAGATTACTGGTTGCCTTGGGCTGTGCTAAGGTGTTTAATGCACAAAATCCATTTGATTGGATGGAATTGATCTCTCTCCAGGGAAAAACAAATTTCTTTGAGAAAAGGGTGGGAG
AGTATCAAAAGGCTTCTGTTATGTCCAACTTGAGTGGCAACCAGACTCATGTATTTACTTTAGATGAAGAATTTTGAAGGCACACTTCCAAGTTGAAGAAGTGGGATATCCATCCAATCCCATTTAAGTACTTGGAAATTTGAATTACATGTGATCTTGTCTCCAAGATAACATTAATGTTTTAATGATGAATGGGCCTT
CATCCATTGGTTGAGAATGTATTAGGTATTTGTATGTTAAATTGGTTGTCTTTGAGGGTTGGAATCATTTCTATCTCAATTCAAATCTCCTTAGTTCCATTTGTTATTTTCTATGACAAGGAGTTGTATTGCAGAGTGCTATTTGCACCATTTTTTAAAGCCTTCAATAAAGCAATTATAGTATTCATAATCCCTTGTTA
TAATTATTTGGTTGCTCTCAATATGGTTAGTACATATTGTTGAATATGTTCCTTCCGAATGTTTCTCTTTCATAGTTTTTCTTTTTA


>TRINITY_DN46601_c0_g1_i11 from sample A7 / Example unspliced isoform:
TCAGGTTGCCTTGGGCTGTGCTAAGGTGTTTAATGCACAAAATCCATTTGATTGGATGGAATTGATCTCTCTCCAgtaagtgcttataccagtgataatattttatgtttgttttaactcagtttgaaagatttggtattgactggaaagtttggtgttattcagGGGAAAAACAAATTTCTTTGAGAAAAGGGTGGGAG
AGTATCAAAAGGCTTCTGTTATGTCCAACTTGAGTGGCAACCAGACTCATGTATTTACTTTAGATGAAGAATTTTGAAGGCACACTTCCAAGTTGAAGAAGTGGGATATCCATCCAATCCCATTTAAGTACTTGGAAATTTGAATTACATGTGATCTTGTCTCCAAGATAACATTAATGTTTTAATGATGAATGGGCCTT
CATCCATTGGTTGAGAATGTATTAGGTATTTGTATGTTAAATTGGTTGTCTTTGAGGGTTGGAATCATTTCTATCTCAATTCAAATCTCCTTAGTTCCATTTGTTATTTTCTATGACAAGGAGTTGTATTGCAGAGTGCTATTTGCACCATTTTTTAAAGCCTTCAATAAAGCAATTATAGTATTCATAATCCCTTGTTA
TAATTATTTGGTTGCTCTCAATATGGTTAGTACATATTGTTGAATATGTTCCTTCCGAATGTTTCTCTTTCATAGTTTTTCTTTTTA




Intron 6 GTAAGATTCG ... TGTTTGTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A165.813.777.4
A2018.104.1
A316.436.2110
A440.918.762
A506.501.6
A627.691664.9
A714.9430.1510.8
A832.034.624.3
A928.4233.21314.6
A1029.8916.774.9



>TRINITY_DN119768_c0_g1_i3 from sample A1 / Example spliced isoform
AAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTC
CGCTCTCGTCAAAACAAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGAGAAAGGTTAAGCACTG
ACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAA
GAGAAGCATCACTTGTTTCGTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGCGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAAC
CTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCC


>TRINITY_DN119768_c0_g1_i2 from sample A1 / Example unspliced isoform:
AAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTC
CGCTCTCGTCAAAACAAGgtaagattcgatcccttgcagcttcattgaatctcatttgggaaatattgtagtcccagtacataacctatgtgcttctgtactgaataattgtttgtcagACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCC
TCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCAGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAG
TCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAAGAGAAGCATCACTTGTTTC
GTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGCGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATT
TCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGGTGTGTTGATTAGTCTGGGGTTTGGTGTTTTAGATTTGATTTTCAATTTGATTTGATTCCATTTTATTTGAAATACTGGTATTAAAATCTAGTTTTCTTGCAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTG
ATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCCTGTAATCTTGTTGGGATGAATGCTAAACTCATGAGTCAGTATATTGACTTTGTTGCTGATAGACTATTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTC
TTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGGCAACACGGATGGAAACCATGTATTTAAATTGGATGTACCCTTTTGAAACTTCGTATTGATTACTTAGCTTGGTCTATTCATGGAGCACAAGGATGGCTCATTGTGCTTGTAGAAAGAGTTTGAAAGTTTTTTTTGAAGTTTCAAAAC
CATTTATGTTTCTTCCATTGTATTGATTACTAAACTTGAGTTATTCCTTGAAGGCAAGGATGACCCTTTGTACAAAG




Intron 7 GTGAGTATTT ... GGTTTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A117.391953
A214.294587
A313.332653
A43.71310
A514.29611
A612.8998218
A710.8474135
A811.3582147
A914.29781511
A1012.556115



>TRINITY_DN119768_c0_g1_i2 from sample A1 / Example spliced isoform
AAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTC
CGCTCTCGTCAAAACAAGGTAAGATTCGATCCCTTGCAGCTTCATTGAATCTCATTTGGGAAATATTGTAGTCCCAGTACATAACCTATGTGCTTCTGTACTGAATAATTGTTTGTCAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCC
TCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCAGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAG
TCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAAGAGAAGCATCACTTGTTTC
GTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGCGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATT
TCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGGTGTGTTGATTAGTCTGGGGTTTGGTGTTTTAGATTTGATTTTCAATTTGATTTGATTCCATTTTATTTGAAATACTGGTATTAAAATCTAGTTTTCTTGCAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTG
ATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCCTGTAATCTTGTTGGGATGAATGCTAAACTCATGAGTCAGTATATTGACTTTGTTGCTGATAGACTATTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTC
TTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGGCAACACGGATGGAAACCATGTATTTAAATTGGATGTACCCTTTTGAAACTTCGTATTGATTACTTAGCTTGGTCTATTCATGGAGCACAAGGATGGCTCATTGTGCTTGTAGAAAGAGTTTGAAAGTTTTTTTTGAAGTTTCAAAAC
CATTTATGTTTCTTCCATTGTATTGATTACTAAACTTGAGTTATTCCTTGAAGGCAAGGATGACCCTTTGTACAAAG


>TRINITY_DN119768_c0_g1_i9 from sample A1 / Example unspliced isoform:
AAAGAGCCCGCATGCTGCCGTGGTTCTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTC
CGCTCTCGTCAAAACAAGGTAAGATTCGATCCCTTGCAGCTTCATTGAATCTCATTTGGGAAATATTGTAGTCCCAGTACATAACCTATGTGCTTCTGTACTGAATAATTGTTTGTCAGACCAACAATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCC
TCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCAGCCGAGGAAGCTGATCTGTCACAAGATCTTCCTCACTGAGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAG
TCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCCGAGGCGCGTGCATTTTACGGGTTCCAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCTTTTGTTAGAGACCTACATCAAGGACTCTAAAGAGAAGGATCACTTGTTTC
GTGCAATCGAAACTGTTCCCTGTGTAGCCAAGAAAGCAAACTGGTCCCTTCGTTGGATCGATAGCTCTGAAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGCGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCGGGTCTAACCTTCTCAAATGAGCTCATT
TCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCCTGTAATCTTGTTGGGATGAATGCTAAACTCATGAGTCAGTATATTGACTTTGTTGCTGA
TAGACTATTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAgtgagtatttatgtttttattgttgattgttattcccctacctatatatttacttggaaaattgtaatttttattgggcttctctttccaatggttttgcagAGGGAAAACAAATTTCT
TTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGGCAACACGGATGGAAACCATGTATTTAAATTGGATGTACCCTTTTGAAACTTCGTATTGATTACTTAGCTTGGTCTATTCATGGAGCACAAGGATGGCTCATTGTGCTTGTAGAAAGAGTTTGAAAGTTTTTTTTGAAGTTTCAAAACC
ATTTATGTTTCTTCCATTGTATTGATTACTAAACTTGAGTTATTCCTTGAAGGCAAGGATGACCCTTTGTACAAAG




Intron 8 GCGCGTGCAT ... TGGGTTCCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A155.731722.720
A248.324.722.323.7
A349.84312635
A454.8324.723.736
A557.873.746
A654.4967.78376.7
A754.9663.78174
A853.8522.72527.3
A956.7634.34643.7
A1059.9440.359.761



>TRINITY_DN111618_c0_g1_i4 from sample A2 / Example spliced isoform
CTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTCCGCTCTCGTCAAAACAAGACCAACA
ATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCA
GCCGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCTGAGATTGCAATTGAAAATATTCATTCAGAAATGTACAGTCT
CTTGTTGGAGACTTACATCAAGGACTCTAAAGAGAAGCATCACTTGTTTCGTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTAGAGGGTATTTTTTTCTCTGGCAGCTTTTGCTCAATCTTTTGGC
TGAAGAAAAGGGGTCTAATGCCCGGTCTAACCTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTTTGTGATGCTCTCCCCTGTAATCTT
GTTGGGATGAATGCTAAACTCATGAGTCAGTATATTGACTTTGTTGCTGATAGACTATTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTCTTTGAGAAAAGAGTTGGAGAATACCAGAAGGCCTCTGTTATGTCTGGTTTGGG
CAACACGGATGGAAACCATGTATTTAAATTGGATGTACCCTTTTGAAACTTCGTATTGATTACTTAGCTTGGTCTATTCATGGAGCACAAGGATGGCTCATTGTGCTTGTAGAAAGAGTTTGAAAGTTTTTTTTGAAGTTTCAAAACCATTTATGTTTCTTCCATTGTATTGATTACTAAACTTGAGTTATTCCTTGAAG
GCAAGGATGAC


>TRINITY_DN111618_c0_g1_i2 from sample A2 / Example unspliced isoform:
CTTGTGGTATCTTGTTTGAGACGCTCGCGCTAAATTTCAATTTTAAACCCAGAGCAATGAATATATAGAACATGTGCGAGCAACCAATGTACTAAATCAGCCCAAGCTATCGTCAAAAACAAGGTAAGTTTTGAGGTTCAGCCCCGTATCGCATCTGGGTGCTTGGGTATCTCTCCGCTCTCGTCAAAACAAGACCAACA
ATGGTGGTCATTGCCGAAGAGCCTCTTTTGATGGAGAACCCACATAGGTTTTGTATGTTTCCGATCAAGTATCCTCAGATATGGGAAATGTATAAGAAGGCAGAGGCTAGTTTTTGGACTGCTAAGGATGTAGAAAGAGTCATTGCAGCAGATGTGCTTATGTATGTAGGTATGTATTAAGGGATTGGCGTGGTTTTGCA
GCCGAGGAAGTTGATCTGTCACAAGATCTTCCTCACTGGGAAAGGTTAAGCACTGACGAAAAGCATTTCATCAGTCATGTTTTGGCTTTCTTTGCGGCTTCTGATGGGATTGTTTTGGAGAATTTGGCTGGTCGTTTCATGAAAGAAGTTCAAGTCCCTGAGgcgcgtgcattttatgggttccagATTGCAATTGAAAA
TATTCATTCAGAAATGTACAGTCTCTTGTTGGAGACTTACATCAAGGACTCTAAAGAGAAGCATCACTTGTTTCGTGCAATTGAAACTGTTCCCTGTGTAGCTAAGAAAGCAGAATGGTCTCTTCGTTGGATCGATAGCTCTGGAAGTTTTGCTGAAAGGATTCTTGCGTTTGCTTGTGTAGAGGGTATTTTTTTCTCTG
GCAGCTTTTGCTCAATCTTTTGGCTGAAGAAAAGGGGTCTAATGCCCGGTCTAACCTTCTCAAATGAGCTCATTTCAAGGGACGAAGGCCTTCACTGTGACTTTGCCTGCTTGCTGTACAGCTTGTTAAATCACAAGCTTAGTGAAGAAAGAGTGAAGGAGATAGTGTGTGATGCTGTTGAGATTGAAAGAGAGTTTGTT
TGTGATGCTCTCCCCTGTAATCTTGTTGGGATGAATGCTAAACTCATGAGTCAGTATATTGACTTTGTTGCTGATAGACTATTGGTTGCATTGGGATATAGCAAAGTGTATAATGTACAGAATCCATTTGACTGGATGGAGCTGATCTCTCTTCAAGGGAAAACAAATTTCTTTGAGAAAAGAGTTGGAGAATACCAGAA
GGCCTCTGTTATGTCTGGTTTGGGCAACACGGATGGAAACCATGTATTTAAATTGGATGTACCCTTTTGAAACTTCGTATTGATTACTTAGCTTGGTCTATTCATGGAGCACAAGGATGGCTCATTGTGCTTGTAGAAAGAGTTTGAAAGTTTTTTTTGAAGTTTCAAAACCATTTATGTTTCTTCCATTGTATTGATTA
CTAAACTTGAGTTATTCCTTGAAGGCAAGGATGAC