NA ----> NA
Intron 1 GTTGTATTTC ... ATTGTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.54 | 8 | 2 | 3.5 |
| A2 | 64.93 | 2.3 | 3 | 5.3 |
| A3 | 100 | 0 | 0 | 2.3 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 60 | 1 | 2 | 1 |
| A6 | 100 | 0 | 4 | 0 |
| A7 | 93.16 | 1 | 21 | 6.3 |
| A8 | 69.62 | 6.5 | 19 | 10.8 |
| A9 | 57.14 | 3 | 6 | 2 |
| A10 | 81.14 | 2.3 | 16 | 3.3 |
>TRINITY_DN46853_c0_g2_i4 from sample A7 / Example spliced isoformCTCTGACATATGCCATCACGAAAACAGCCTGTCTCTGACATCAACGGTTAGTTTAGTAAGTGGAATAGGACATCATTGTAACCAAAATTATCAGAACCGCCACTCCACTGCTTTATAAAGTTTGTTACCTTTTCCTCTGCCTTTTCGTCAGCATGGGCATCATCTCTTCTCTGATTTTGTGTGTTTATGATGCAGTGTAA
AGCATGGACATCATCTCTTCTCTGAATTTTGTGTTTGTTTTGTAAGTTTTGTTTTACTATTGGCTTTGTGTGTTTGTCTAGGAAAAGAATAGAACAGAATCCTGGAGATTATTCACCCTTGTTATAATCTTTCTGACACGGGAGGAGAATTAGGAGGGAGAGATTAATTTGAAGCAGGTTTACCCTGAGCACCCCAAGGA
GATTTCATCGTAATCTTCACATGGTTCAGGTTTGTAGAGAGAAGCATAAAATGGACAAGTAGCTTCAAGAACCTTCGGAGGGTTCAAGATCAACTTTGAATTTAGCCCCATAAGAAGAGGAGAGAAAAATTAAGAAGCCGGCGAAGAGCCAATACACAATACAATATTATAGATCGCAGAACACAAAGTGATCTGCTCAG
AGAAATGAAGAAGGCGGCCAAGAGCCTTCAAACAGAACATGTGGGGTTTCTTGCTGCCTGGTGAGCCTTCAAACAGAACTTCTTTTGTATGCTCAAATAAAAGCGTTTTGCTGTTTGGGAAACTGGCATGTTGGCTCGACTGGAAATTACAGGTGGTATCATACCATCGAGAAAATATATACACGAGGAAAAGGACGCCC
AGTTACCAAATTGGAAAAGGACGCCCAGTTACCAAATTGGAAAAGGATGTCCAATTATCAAATTTGAATCGCTGCCCTCAATCTTAATGGAGAATTAGTCTTTCTCACTACAAACAGCTGGATGATTCTTTCAATGGATGCACGGACCCAGGCGAACAGAACTTCTTTGACCGCTTTTCCTTAGAG
>TRINITY_DN46853_c0_g2_i14 from sample A7 / Example unspliced isoform:CTCTGACATATGCCATCACGAAAACAGCCTGTCTCTGACATCAACGGTTAGTTTAGTAAGTGGAATAGGACATCATTGTAACCAAAATTATCAGAACCGCCACTCCACTGCTTTATAAAGTTTGTTACCTTTTCCTCTGCCTTTTCGTCAGCATGGGCATCATCTCTTCTCTGATTTTGTGTGTTTATGATGCAGTGTAA
AGCATGGACATCATCTCTTCTCTGAATTTTGTGTTTGTTTTGTAAGTTTTGTTTTACTATTGGCTTTGTGTGTTTGTCTAGGAAAAGAATAGAACAGAATCCTGGAGATTATTCACCCTTGTTATAATCTTTCTGACACGGGAGGAGAATTAGGAGGGAGAGATTAATTTGAAGCAGGTTTACCCTGAGCACCCCAAGGA
GATTTCATCGTAATCTTCACATGGTTCAGGTTTGTAGAGAGAAGCATAAAATGGACAAGTATCCATATCAAAGAAAATATGACAAGTAGCTTCAAGAACCTTCGGAGGGTTCAAGATCAACTTTGAATTTAGCCCCATAAGAAGAGGAGAGAAAAATTAAGAAGCCGGCGAAGAGCCAATACACAATACAATATTATAGA
TCGCAGAACACAAAGTGATCTGCTCAGAGAAATGAAGAAGGCGGCCAAGAGCCTTCAAACAGAACATGTGGGGTTTCTTGCTGCCTGGTGAGCCTTCAAACAGAACTTCTTTTGTATGCTCAAATAAAAGCGTTTTGCTGTTTGGGAAACTGGCATGTTGGCTCGACTGGAAATTACAGGTGGTATCATACCATCGAGAA
AATATATACACGAGGAAAAGGACGCCCAGTTACCAAATTGGAAAAGGACGCCCAGTTACCAAATTGGAAAAGGATGTCCAATTATCAAATTTGAATCGCTGCCCTCAATCTTAATGGAGgttgtatttcaatttccatgattaaatcagctcggtttaaagaagaaaagaaagttgtatttcaatttcaatgaagaaatc
agttaagtttacagaaaaaaatgaatagaatattggccttcgatttttatgatggaataagggaatgacaaatcacagtaaaatgatgagaatttgggaaaatattagatgggtttaacaaaaatgtatatattgcaaaaatagaagtagattgcataatttgatgatatttattaatatttaaaattgtttcttattgt
ttaagAATTAGTCTTTCTCACTACAAACAGCTGGATGATTCTTTCAATGGATGCACGGACCCAGGCGAACAGAACTTCTTTGACCGCTTTTCCTTAGAGGGGAGGAGAATTAGGAGGGAGAGATTAATTTGAAGCAGGTTCACCCTGAGCACCCAAAGTAGATTTCATCGTAATCTTCACATGGTTCAGGTTTGTAGAGA
GAAGCATAAAATGGACAAGTATCCATATCAAAGAAAATATGACAAGTAGCTTCCAGAACCTTCGGAGGGTTCAAGATCAACTTTGAATTTAGCCCCATAAGAAGAGG
Intron 2 GTGAGCCTTC ... CTACAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.36 | 3 | 19 | 1.7 |
| A2 | 64.71 | 6 | 11 | 5 |
| A3 | 77.78 | 4 | 14 | 2 |
| A4 | 73.33 | 4 | 11 | 0 |
| A5 | 100 | 0 | 7 | 1 |
| A6 | 80 | 3 | 12 | 0 |
| A7 | 86.67 | 8 | 52 | 6 |
| A8 | 84.09 | 7 | 37 | 7.3 |
| A9 | 83.33 | 3 | 15 | 2 |
| A10 | 84.29 | 11 | 59 | 0 |
>TRINITY_DN42848_c1_g1_i18 from sample A9 / Example spliced isoformCGAAAAAACAGCCGTCTCTGACATTACATTAATGGTTAGTTTAGCAAGTGGAATATATCTCACAAAAAGCTATTCAAAATTGTAGCCGTTGCTACCAGAACCGCCATTCACTGCTTTATAAAGTTTCTTTATGTTTCCTGTGTCTTTCCCTCAGTGTGGAAATCATCTCTTCTTTTTGTGTGTGTCTATGATGCTATGAT
CCTAGAATTCTGTGAAACTCTATTTTCCCGGTGGACGGTTATCGAAGGTGGAGAGGACTGTGGGCATGTCTCTCGCGATGATCTCGGACGACTGTTGGCTTTGTCAGAAGGAACTTCTTTGACCGCTTTTCTTTATGTTTGTCTATGAAAAGAATAGATTATAAGAAGCCTCGAGATTATTCACTCTGGTTATAATTAGG
AGGTCAGGGAAAAGAGATCTTCAAACAGCTGGATGCTGCGTTCAATGGATGCACGGTGCCCAGGCCAATAGAAGGAACTTCTTTGACCGCTTTTCTTTACAGAATTAGGAGGGAGAGATCTTCAAACAGCTGGATGCTGCGTTCAATGGATGCACGGTGCCCAGGCCAATAGAAGGAACTTCTTTGACCGCTTTTCTTTA
CAGGGGAGGAGAATTAGGAGGGAGAGATTAATTTGAAGCAGGTTTACCCTGAGCACCCCAAGGAGATTTCATCGTAATCTTCACATGGTTCAGGTTTGTAGAGAGAAGCATAAAATGGACAAGTATCCATATCAAAGAAAATATGACAAGTAGCTTCAAGAACCTTCGGAGGGTTCAAGATCAACTTTGAATTTAGCCCC
ATAAGAAGAGGAGAGAAAAATTAAGAAGCCGGCGAAGAGCCGTTACACAATACGATATTATAGATCGCAGAACACAAAGGGATCTGCTCAGAAAAATGAAGAAGGCGGCCAAGAGCCTTCAAACAGAACATGTGGGGTTTCTTGCTGCCTGCTGGATGATTCTTTCAATGGATGCACGGACACAGGCGAACAGAACTTCT
TTGACCGCTTTTCCTTAGAGAAGGTGTTGCTAATGTTGATCTAGTACTCCTAATAACGACAAGGCCAATGATTGAGAATACTCTGGTTTGGGTTGTGGCATGTGAGCATGATCAATGGGGTCATGCAATTGCAGGTCATGTAAATG
>TRINITY_DN42848_c1_g1_i12 from sample A9 / Example unspliced isoform:CGAAAAAACAGCCGTCTCTGACATTACATTAATGGTTAGTTTAGCAAGTGGAATATATCTCACAAAAAGCTATTCAAAATTGTAGCCGTTGCTACCAGAACCGCCATTCACTGCTTTATAAAGTTTCTTTATGTTTCCTGTGTCTTTCCCTCAGTGTGGAAATCATCTCTTCTTTTTGTGTGTGTCTATGATGCTATGAT
CCTAGAATTCTGTGAAACTCTATTTTCCCGGTGGACGGTTATCGAAGGTGGAGAGGACTGTGGGCATGTCTCTCGCGATGATCTCGGACGACTGTTGGCTTTGTCAGAAGGAACTTCTTTGACCGCTTTTCTTTATGTTTGTCTATGAAAAGAATAGATTATAAGAAGCCTCGAGATTATTCACTCTGGTTATAATTAGG
AGGTCAGGGAAAAGAGATCTTCAAACAGCTGGATGCTGCGTTCAATGGATGCACGGTGCCCAGGCCAATAGAAGGAACTTCTTTGACCGCTTTTCTTTACAGAATTAGGAGGGAGAGATCTTCAAACAGCTGGATGCTGCGTTCAATGGATGCACGGTGCCCAGGCCAATAGAAGGAACTTCTTTGACCGCTTTTCTTTA
CAGGGGAGGAGAATTAGGAGGGAGAGATTAATTTGAAGCAGGTTTACCCTGAGCACCCCAAGGAGATTTCATCGTAATCTTCACATGGTTCAGGTTTGTAGAGAGAAGCATAAAATGGACAAGTATCCATATCAAAGAAAATATGACAAGTAGCTTCAAGAACCTTCGGAGGGTTCAAGATCAACTTTGAATTTAGCCCC
ATAAGAAGAGGAGAGAAAAATTAAGAAGCCGGCGAAGAGCCGTTACACAATACGATATTATAGATCGCAGAACACAAAGGGATCTGCTCAGAAAAATGAAGAAGGCGGCCAAGAGCCTTCAAACAGAACATGTGGGGTTTCTTGCTGCCTGgtgagccttcaaacagaacttcttttgtatgctctttgtatgctcaaat
aaaagcgttttgctgtatgggaaactggcatgttggctcgactggaaattacaggtggtatcatacaatcgagaaaatatatacacgaggaaaaggacgcccagttaccaaattggaaaaggacgcccagttaccaaattggaaaaggatgtccaattatcaaatttgaatcgctgctcctcatcttaatggaggatgta
tttcaatttccatgaataaatcagctcggtttaaagaagaaaagaaagttgtatttcaatttcaatgaatagaatattggccttcgatttttatgaaggaataagggaatgaaaaatcatagtaaaatgatgagaatttgggaaaatattagatgggtttaacaaaaatgtatatattgcaaaaatagaagtagattgca
taatttgatgatatttattaatatttaaaattgtttcttattgtttaagaattagtctttctcactacaaacagCTGGATGATTCTTTCAATGGATGCACGGACCCAGGCGAACAGAACTTCTTTGACCTATTTTCCATAAAGTTGCGGATTCTTTACCTCGCTGGAAGGCCAGCTACTCATGATTAAGGACCATCCGTA
CAGTGGTACGGACTTCAGGGAGGACTCGGACCTAGTGCTGCCTAAGGGAGCAGAGTGGGGAGAGATCGATGTGGGTCCTTCACGACCGGTGGGAGTTTTGATTCTCGTGAGGAAAGGAGAGGCACCACCAGTAGCCCTAGCCATGCATGATTCCATCGTGGAGATGGATGACGTCTATGAGAACCTTACCAGGTTGACAT
TGGATGTTCCAGATGTAGTAGTGTATGATTTACCGAGGCCCATGCAGAGGTACATAGTTGGTGTTAGCTTGCGCTTCAGTGAGCTGCTCCATAAGGTAGCAAGAGCGGTAGACTGCTTCCACAGTCGACAGGCGATAGCTGTGAGACCTAGGAGTGCATGTGCCAAGCATTAGGCCTTGTGATGTTATTATGTATGTACT
GAGAGC