sp|Q8L7C2|CFM2_ARATH ----> CRM-domain containing factor CFM2, chloroplastic
Intron 1 GTGAACAACT ... TTTCCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.65 | 14 | 0 | 3 |
| A2 | 25 | 12 | 0 | 4 |
| A3 | 18.75 | 13 | 0 | 3 |
| A4 | 0 | 4 | 0 | 0 |
| A5 | 9.09 | 10 | 0 | 1 |
| A6 | 33.33 | 4 | 0 | 2 |
| A7 | 24.39 | 31 | 0 | 10 |
| A8 | 25 | 24 | 0 | 8 |
| A9 | 20.83 | 19 | 0 | 5 |
| A10 | 25 | 9 | 0 | 3 |
>TRINITY_DN42336_c0_g1_i6 from sample A8 / Example spliced isoformGTTGATAGCATTCATGAGAGATGGAGGAATTCCGAGGTCGTTAAGATCAAGTGCGAGGATTTTTGCGGCTTGAATATGAAGAGAACCCATGATATCTTGGAGATGAAAACTGGAGGGCTGGTGGTTTGGAGGGCTGGAAGTGTTATTGTTCTATATAGAGGACTCAATTACGAACCTCCTTATGTAAAAGCTGCCAGAAG
TCTAGGGATTGCTTTAAAGCCTGTAGGTGGCATGCCATATGCAACTGTTAGAGGTTCCTTGAGCACACCAGTTGATAAAGTGGACACAACCCTGAGTGGGGACACATTAAATAAAGATAGTGTGTCTGATATGATGGATGGTAAACAGTTAGCAGGTTTTGTTAACTCTGATGTTGCTCTCCATGAAACAGATTGTACAT
CCCATCCAAAAACTGAATATGAAAGAGAAATTATTGACCTATTGGAAGGGCTGGGTCCTCGATTTACTGATTGGTGGGGATATGAGCCTTTACCTGTAGATGCTGACTTGCTACCACCAGTTATTCTTGGATACAAGAAGCCTTTCAGGCTTCTTCCTTATGGGATGAAACCCAAGTTGACTGACAGCGAAATGACATAC
TTGAGGAGACTTGCACGGCCATTACCTCCTCACTTTGCCTTAGGGATAAATAAGCACCTGCAGGGATTGGCTATCGCCATGGTGAAACTTTGGGATAAATGTGAAATTGCCAAGATTGCTGTGAAGCGAGGAGTCCAGAACACTGACAGTGAAAAAATGGCAGAAGAGCTTAAGCGGCTTACAGGAGGTTCGCTGCTCTC
AAGAGACAAGGAGTTCATTGTCTTCTACAGAGGAAAGGACTTTCTCCCTTCTTCCATTGCTGCTGTATTAGCAGAGAGAAAGGCAATGGTGGAGGAACTTGAAGAGAAGGAAACAAAGGCACAGTTGATAGCAACCTCACCAGTTCTTTCTGCTGGTGAAACAACACCTACTGTTTCAGGTACGGTATCTCAAATTCCAG
AAGCCGAAAAACAATTTGAAGAATGGATCGATAGTGAAGAGCAGAGGAAGATAAAAGCAGAAGCATTGAGAGCCAAGCGGCTTGCAGTAGCAAGAAGGCTTGATAGCAAGTTGACTGGTGCCTTGTCAAAGAAGAGTGAAGTAGAAAATGAATTGGGTGATATAGAAAAGGTCTGGGAGCCTGTTGAACTGTCAGCAGAT
AGAGAGACAATAACTGAAGAAGAGAGATTCATGTTACGTAAACTAGGTTTAAGAATGAAACCATTCTTATTGCTGGGGAGGCGAGGAGTCTTCGATGGTGTGGTAGAAAACATGCACTTGCATTGGAAGTACAGGGATTTAGTAAAAATAATTTCAAAAGAAAAGAGTGTTGCGCAGGTTAAACACACAGCAAGAATGTT
GGAATATGAAAGTGGGGGAATATTAGTGGCAGTGGAAACAGTATCCAAAGGTCATGCCATAATTATATATCGTGGGAAGAATTACCGGCGTCCCGCTGTGTTGCGCCCAAAGAGCCTCTTGACTAAAAAGGAAGCATTAAAGCGTTCAATTGAGATCCAGCGGCATGAGTCATTGAATCTTCAAATATTACGACTGGAGA
GAAATATAGAACTGCTGAAAAATCACCTTAGCAAAGTGGAAGATGAAAACGAAGAAATTAGTGAATTGTTGATTGATGAGTTGGAATCTACTTGCCCTTCTGAAGACGAGGACGAAATTATTCTGCAGTCAACTAAAGAAGCGCGTTCTACACATCTTTCCAAAGATGAAGAAGGAACTGATACATATTCAACTAAAGAG
TTGGGTTCTGTATATCCTCCTGAAAAAGAAGAGGATGAAGATGAAGCAGTACAGTTTGATCCCTATGACAGCAACAGTGAAAATGAGGACAGTTTTTCCAATTTCCAGTCAGGAAAAAATGCAGCTCAGTTAGTAAGCAATGAGACTGGTACTGTGGACAGTTATACCATAAAGAACAAAATGCCTGATAATGTGTATAG
AGCTGAGCCACTCTCAAATAAACAGAGGCTTGTACTACGGAAACAAGCTCTAAAATGGGGAAAGCCAGCTCAATACCATGTTGGAAGCTACAGGAGCAGTGCTGGTATCTCAGGAACCTACCAAAATAATATTATATCGGGGCTGGCCAGAAGGTGAAGTAAAATGCTCCTATAAAAAAAGGAGGGAAGAATCAGAAGAG
ATGTCTAACGAATTATTGACAGCTATTCGAAAAGAATGTGGTCTGAAGGTACAAGATGACACCGAAAATATTCAGAATGACTCTAACCATAAAGTTCATGCTGGTAATGAAATTTTGCATAACATGGCTGAAGAAGATTGCCAACTTGAAATGAAATTTCAAGGATGAATAGTAAAGTATAGTGAAACATGACAAAGATA
TAACTGATCTGATGCCTTCGTGATGGATTTTCTAGATGGTTCGAGAGTGTGAAAGGGACTAAGAAGGTGCAGCCTGCTTCAAGTCCATTTGCACAAGTTGTGAAGATAATTCACTGGGGAACAGTGAAATCAATGGTAAAGATAAAGTTCATTATGAACCTAGTACGCTTAGATTGTGGAGGGGCCACAGGGTCAAAATT
AAACTATCAATGGAGGCTGGTGTTCAGAAAGAAACGATTCCTTGAATTTCAGAATTAGGCCAACAGATGGTCGGTTTATGATCTGGACTGAAACTCTTCAAGAGAAACTGCAAGAATTCAATCTGATTTGGCTGATGAGAATTGCCTTGCTTGTTAGTGCTGCCGCATGAAGAAATATTACCGTGAAACAGAATTTCCAT
CCCACTTGTATTGCCAGTGGACAAAACTAGTGCCAGGGGAGGAAGATTTGCATGGAAGAGAGGAAGGTACTCAGAGGCAGTCAATGTTCAAACTGGAGCTAATGGAAAAAATAAAACCGAGAACAGGTTCTGTATTAATGAGATATTTCATTTGGTTCCATTTTATGTATGAAATGTTTATTTGGCTTGAGAAATTCTGA
TCACTGCCATCCTCTTTCCATCACTTTGAAATTTCCAAGATCCAGAGAGAATATGTCATCTGAGTGTATATTGAATTGATATCCTACATAGTAAACTCAATGCTATTTACATTCTTGATTCTTAATTGTTCCTTGTTTGGAATACTAATCATGGATAATTAATTGTTGTGTCTAATGATGCCACTGTCTGCAGTAGGCGT
TTTGAATAGAGGTGTGTATAAACATACAATGTTTTACATAGCAGCCCCTTAGGCAGAATCACATGTTTTTACATCTAATCTTTTATAAAATGCACCTAAAGCTTCTCCCA
>TRINITY_DN42336_c0_g1_i1 from sample A8 / Example unspliced isoform:ATATCCTCCTGAAAAAGAAGAGgtgaacaacttaggtttggttagttaattaggatgaatcaattatagttatgtaaaattaagcaagtcaagcacttctatcttcacctttggatatacatcctaccaaaacatatttggttttatcatcaatgttatggtttctaaagatgtatttttttcccacagGATGAAGATGA
AGCAGTACAGTTTGATCCCTATGACAGCAACAGTGAAAATGAGGACAGTTTTTCCAATTTCCAGTCAGGAAAAAATGCAGCTCAGTTAGTAAGCAATGAGACTGGTACTGTGGACAGTTATACCATAAAGAACAAAATGCCTGATAATGTGTATAGAGCTGAGCCACTCTCAAATAAACAGAGGCTTGTACTACGGAAAC
AAGCTCTAAAATGGGGAAAGCCAGCTCAATACCATGTTGGAAAGAATAATGTTGTACATGGCCTTGTTAAGTCCATCTGTTCATACTTTGAAAAGCATGCACTCGTGATAGTTGGTGTGAAGGGCCGGGCCAAGGGAACTTCTATTGCTGAAATTGTGTTCCAGCTTGAGGAAGCTACAGGAGCAGTGCTGGTATCTCAG
GAACCTACCAAAATAATATTATATCGGGGCTGGCCAGAAGGTGAAGTAAAATGCTCCTATAAAAAAAGGAGGGAAGAATCAGAAGAGATGTCTAACGAATTATTGACAGCTATTCGAAAAGAATGTGGTCTGAAGGTACAAGATGACACCGAAAATATTCAGAATGACTCTAACCATAAAGTTCATGCTGGTAATGAAAT
TTTGCATAACATGGCTGAAGAAGATTGCCAACTTGAAATGAAATTTCAAGGATGAATAGTAAAGTATAGTGAAACATGACAAAGATATAACTGATCTGATGCCTTCGTGATGGATTTTCTAGATGGTTCGAGAGTGTGAAAGGGACTAAGAAGGTGCAGCCTGCTTCAAGTCCATTTGCACAAGTTGTGAAGATAATTCA
CTGGGGAACAGTGAAATCAATGGTAAAGATAAAGTTCATTATGAACCTAGTACGCTTAGATTGTGGAGGGGCCACAGGGTCAAAATTAAACTATCAATGGAGGCTGGTGTTCAGAAAGAAACGATTCCTTGAATTTCAGAATTAGGCCAACAGATGGTCGGTTTATGATCTGGACTGAAACTCTTCAAGAGAAACTGCAA
GAATTCAATCTGATTTGGCTGATGAGAATTGCCTTGCTTGTTAGTGCTGCCGCATGAAGAAATATTACCGTGAAACAGAATTTCCATCCCACTTGTATTGCCAGTGGACAAAACTAGTGCCAGGGGAGGAAGATTTGCATGGAAGAGAGGAAGGTACTCAGAGGCAGTCAATGTTCAAACTGGAGCTAATGGAAAAAATA
AAACCGAGAACAGGTTCTGTATTAATGAGATATTTCATTTGGTTCCATTTTATGTATGAAATGTTTATTTGGCTTGAGAAATTCTGATCACTGCCATCCTCTTTCCATCACTTTGAAATTTCCAAGATCCAGAGAGAATATGTCATCTGAGTGTATATTGAATTGATATCCTACATAGTAAACTCAATGCTATTTACATT
CTTGATTCTTAATTGTTCCTTGTTTGGAATACTAATCATGGATAATTAATTGTTGTGTCTAATGATGCCACTGTCTGCAGTAGGCGTTTTGAATAGAGGTGTGTATAAACATACAATGTTTTACATAGCAGCCCCTTAGGCAGAATCACATGTTTTTACATCTAATCTTTTATAAAATGCACCTAAAGCTTCTCCCA
Intron 2 GTACAAGATG ... GATTTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.39 | 20 | 13 | 13 |
| A2 | 55.56 | 8 | 8 | 12 |
| A3 | 69.23 | 4 | 5 | 13 |
| A4 | 64.71 | 3 | 8 | 3 |
| A5 | 50 | 1 | 2 | 0 |
| A6 | 70 | 3 | 4 | 10 |
| A7 | 59.03 | 21 | 45 | 15.5 |
| A8 | 52.71 | 20 | 16.6 | 28 |
| A9 | 45.45 | 36 | 43 | 17 |
| A10 | 47.37 | 10 | 11 | 7 |
>TRINITY_DN111010_c0_g1_i3 from sample A1 / Example spliced isoformAGGGATAAATAAGCACCTGCAGGGATTGGCTATCGCCATGGTGAAACTTTGGGATAAATGTGAAATTGCCAAGATTGCTGTGAAGCGAGGAGTCCAGAACACTGACAGTGAAAAATTGGCAGAAGAGCTTAAGCGGCTTACAGGAGGTTCGCTGCTCTCAAGAGACAAGGAGTTCATTGTCTTCTACAGAGGAAAGGACT
TTCTCCCTTCTTCCATTGCTGCTGTATTAGCAGAGAGAAAGGCAATGGTGGAGGAACTTGAAGAGAAGGAAACAAAGGCACAGTTGATAGCAACCTCACCAGTTCTTTCTGCTGGTGAAACAACACCTACTGTTTCAGGTACGGTATCTCAAATTCCAGAAGCCGAAAAACAATTTGAAGAATGGATCGATAGTGAAGAG
CAGAGGAAGATAAAAGCAGAAGCATTGAGAGCCAAGCGGCTTGCAGTAGCAAGAAGGCTTGATAGCAAGTTGACTGGTGCCTTGTCAAAGAAGAGTGAAGTAGAAAATGAATTGGGTGATATAGAAAAGGTCTGGGAGCCTGTTGAACTGTCAGCAGATAGAGAGACAATAACTGAAGAAGAGAGATTCATGTTACGTAA
ACTAGGTTTAAGAATGAAACCATTCTTATTGCTGGGGAGGCGAGGAGTCTTCGATGGTGTGGTAGAAAACATGCACTTGCATTGGAAGTACAGGGATTTAGTAAAAATAATTTCAAAAGAAAAGAGTGTTGCGCAGGTTAAACACACAGCAAGAATGTTGGAATATGAAAGTGGGGGAATATTAGTGGCAGTGGAAACAG
TATCCAAAGGTCATGCCATAATTATATATCGTGGGAAGAATTACCGGCGTCCCGCTGTGTTGCGCCCAAAGAGCCTCTTGACTAAAAAGGAAGCATTAAAGCGTTCAATTGAGATCCAGCGGCATGAGTCATTGAATCTTCAAATATTACGACTGGAGAGAAATATAGAACTGCTGAAAAATCACCTTAGCAAAGTGGAA
GATGAAAACGAAGAAATTAGTGAATTGTTGATTGATGAGTTGGAATCTACTTGCCCTTCTGAAGACGAGGACGAAATTATTCTGCAGTCAACTAAAGAAGCGCGTTCTACACATCTTTCCAAAGATGAAGAAGGAACTGATACATATTCAACTAAAGAGTTGGGTTCTGTATATCCTCCTGAAAAAGAAGAGGATGAAGA
TGAAGCAGTACAGTTTGATCCCTATGACAGCAACAGTGAAAATGAGGACAGTTTTTCCAATTTCCAGTCAGGAAAAAATGCAGCTCAGTTAGTAAGCAATGAGACTGGTACTGTGGACAGTTATACCATAAAGAACAAAATGCCTGATAATGTGTATAGAGCTGAGCCACTCTCAAATAAACAGAGGCTTGTACTACGGA
AACAAGCTCTAAAATGGGGAAAGCCAGCTCAATACCATGTTGGAAAGAATAATGTTGTACATGGCCTTGTTAAGTCCATCTGTTCATACTTTGAAAAGCATGCACTCGTGATAGTTGGTGTGAAGGGCCGGGCCAAGGGAACTTCTATTGCTGAAATTGTGTTCCAGCTTGAGGAAGCTACAGGAGCAGTGCTGGTATCT
CAGGAACCAACCAAAATAATATTATATCGGGGCTGGCCAGAAGGTGAAGTAAAATGCTCCTATAAAAAAAGGAGGGAAGAATCAGAAGAGATGTCTAACGAATTATTGACAGCTATTCGAAAAGAATGTGGTCTGAAGATGGTTCGAGAGTGTGAAAGGGACTAAGAAGGTGCAGCCTGCTTCAAGTCCATTTGCACAAG
TTGTGAAGATAATTCACTGGGGAACAGTGAAATCAATGGTAAAGATAAAGTTCATTATGAACCTAGTACGCTTAGATTGTGGAGGGGCCACAGGGTCAAAATTAAACTATCAATGGAGGCTGGTGTTCAGAAAGAAACGATTCCTTGAATTTCAGAATTAGGCCAACAGATGGTCGGTTTATGATCTGGACTGAAACTCT
TCAAGAGAAACTGCAAGAATTCAATCTGATTTGGCTGATGAGAATTGCCTTGCTTGTTAGTGCTGCCGCATGAAGAAATATTACCGTGAAACAGAATTTCCATCCCACTTGTATTGCCAGTGGACAAAACTAGTGCCAGGGGAGGAAGATTTGCATGGAAGAGAGGAAGGTACTCAGAGGCAGTCAATGTTCAAACTGGA
GCTAATGGAAAAAATAAAACCGAGAACAGGTTCTGTATTAATGAGATATTTCATTTGGTTCCATTTTATGTATGAAATGTTTATTTGGCTTGAGAAATTCTGATCACTGCCATCCTCTTTCCATCACTTTGAAATTTCCAAGATCCAGAGAGAATATGTCATCTGAGTGTATATTGAATTGATATCCTACATAGTAAACT
CAATGCCG
>TRINITY_DN111010_c0_g1_i2 from sample A1 / Example unspliced isoform:AGGGATAAATAAGCACCTGCAGGGATTGGCTATCGCCATGGTGAAACTTTGGGATAAATGTGAAATTGCCAAGATTGCTGTGAAGCGAGGAGTCCAGAACACTGACAGTGAAAAATTGGCAGAAGAGCTTAAGCGGCTTACAGGAGGTTCGCTGCTCTCAAGAGACAAGGAGTTCATTGTCTTCTACAGAGGAAAGGACT
TTCTCCCTTCTTCCATTGCTGCTGTATTAGCAGAGAGAAAGGCAATGGTGGAGGAACTTGAAGAGAAGGAAACAAAGGCACAGTTGATAGCAACCTCACCAGTTCTTTCTGCTGGTGAAACAACACCTACTGTTTCAGGTACGGTATCTCAAATTCCAGAAGCCGAAAAACAATTTGAAGAATGGATCGATAGTGAAGAG
CAGAGGAAGATAAAAGCAGAAGCATTGAGAGCCAAGCGGCTTGCAGTAGCAAGAAGGCTTGATAGCAAGTTGACTGGTGCCTTGTCAAAGAAGAGTGAAGTAGAAAATGAATTGGGTGATATAGAAAAGGTCTGGGAGCCTGTTGAACTGTCAGCAGATAGAGAGACAATAACTGAAGAAGAGAGATTCATGTTACGTAA
ACTAGGTTTAAGAATGAAACCATTCTTATTGCTGGGGAGGCGAGGAGTCTTCGATGGTGTGGTAGAAAACATGCACTTGCATTGGAAGTACAGGGATTTAGTAAAAATAATTTCAAAAGAAAAGAGTGTTGCGCAGGTTAAACACACAGCAAGAATGTTGGAATATGAAAGTGGGGGAATATTAGTGGCAGTGGAAACAG
TATCCAAAGGTCATGCCATAATTATATATCGTGGGAAGAATTACCGGCGTCCCGCTGTGTTGCGCCCAAAGAGCCTCTTGACTAAAAAGGAAGCATTAAAGCGTTCAATTGAGATCCAGCGGCATGAGTCATTGAATCTTCAAATATTACGACTGGAGAGAAATATAGAACTGCTGAAAAATCACCTTAGCAAAGTGGAA
GATGAAAACGAAGAAATTAGTGAATTGTTGATTGATGAGTTGGAATCTACTTGCCCTTCTGAAGACGAGGACGAAATTATTCTGCAGTCAACTAAAGAAGCGCGTTCTACACATCTTTCCAAAGATGAAGAAGGAACTGATACATATTCAACTAAAGAGTTGGGTTCTGTATATCCTCCTGAAAAAGAAGAGGATGAAGA
TGAAGCAGTACAGTTTGATCCCTATGACAGCAACAGTGAAAATGAGGACAGTTTTTCCAATTTCCAGTCAGGAAAAAATGCAGCTCAGTTAGTAAGCAATGAGACTGGTACTGTGGACAGTTATACCATAAAGAACAAAATGCCTGATAATGTGTATAGAGCTGAGCCACTCTCAAATAAACAGAGGCTTGTACTACGGA
AACAAGCTCTAAAATGGGGAAAGCCAGCTCAATACCATGTTGGAAAGAATAATGTTGTACATGGCCTTGTTAAGTCCATCTGTTCATACTTTGAAAAGCATGCACTCGTGATAGTTGGTGTGAAGGGCCGGGCCAAGGGAACTTCTATTGCTGAAATTGTGTTCCAGCTTGAGGAAGCTACAGGAGCAGTGCTGGTATCT
CAGGAACCAACCAAAATAATATTATATCGGGGCTGGCCAGAAGGTGAAGTAAAATGCTCCTATAAAAAAAGGAGGGAAGAATCAGAAGAGATGTCTAACGAATTATTGACAGCTATTCGAAAAGAATGTGGTCTGAAGgtacaagatgacaccgaaaatattcagaatgactctaaccataaagttcatgctggtaatga
aattttgcataacatggctgaagaagattgccaacttgaaatgaaatttcaaggatgaatagtaaagtatagtgaaacatgacaaagatataactgatctgatgccttcgtgatggattttctagATGGTTCGAGAGTGTGAAAGGGACTAAGAAGGTGCAGCCTGCTTCAAGTCCATTTGCACAAGTTGTGAAGATAAT
TCACTGGGGAACAGTGAAATCAATGGTAAAGATAAAGTTCATTATGAACCTAGTACGCTTAGATTGTGGAGGGGCCACAGGGTCAAAATTAAACTATCAATGGAGGCTGGTGTTCAGAAAGAAACGATTCCTTGAATTTCAGAATTAGGCCAACAGATGGTCGGTTTATGATCTGGACTGAAACTCTTCAAGAGAAACTG
CAAGAATTCAATCTGATTTGGCTGATGAGAATTGCCTTGCTTGTTAGTGCTGCCGCATGAAGAAATATTACCGTGAAACAGAATTTCCATCCCACTTGTATTGCCAGTGGACAAAACTAGTGCCAGGGGAGGAAGATTTGCATGGAAGAGAGGAAGGTACTCAGAGGCAGTCAATGTTCAAACTGGAGCTAATGGAAAAA
ATAAAACCGAGAACAGGTTCTGTATTAATGAGATATTTCATTTGGTTCCATTTTATGTATGAAATGTTTATTTGGCTTGAGAAATTCTGATCACTGCCATCCTCTTTCCATCACTTTGAAATTTCCAAGATCCAGAGAGAATATGTCATCTGAGTGTATATTGAATTGATATCCTACATAGTAAACTCAATGCCG