NA ----> NA
Intron 1 GTAAGCAATT ... TCGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.81 | 43 | 21 | 0 |
| A2 | 25.33 | 56 | 19 | 2 |
| A3 | 30.84 | 74 | 33 | 0 |
| A4 | 21.31 | 48 | 13 | 2 |
| A5 | 34.92 | 41 | 22 | 2 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 27.08 | 35 | 13 | 0 |
| A8 | 0 | 7 | 0 | 0 |
| A9 | 28.57 | 20 | 8 | 0 |
| A10 | 33.33 | 26 | 13 | 0 |
>TRINITY_DN101298_c0_g1_i3 from sample A5 / Example spliced isoformCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAGGCACCTC
TGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTATTGGATG
GGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGTTCATCGTAACCAGTCTTTCTTGGTGG
CGAGCAGGCAGAAACTGATCGAATCAATTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAGG
CAGATGGGAGGCGGTCGGCACATGCAGGAGGAAAGAATGGG
>TRINITY_DN101298_c0_g1_i7 from sample A5 / Example unspliced isoform:CTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAgtaagcaa
ttttgcttattcccctgaaatgtttttgcttctgagggttttggggatgtttagcgtctagtttgtggccgggccttcattttggaggcataaccctcaactttaatggattgtaagggcttttattttcagccatttctctgatgtttcggcgaatttctctggtttcgttttcagGGCACCTCTGCAGATCAGGACAC
Intron 2 GTTGTTACTT ... AATATTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.75 | 21 | 1 | 10 |
| A2 | 55.1 | 11 | 10 | 17 |
| A3 | 16.67 | 10 | 0 | 4 |
| A4 | 25 | 6 | 2 | 2 |
| A5 | 48.15 | 7 | 6 | 7 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 5.56 | 17 | 0 | 2 |
| A8 | 7.69 | 6 | 0 | 1 |
| A9 | 9.09 | 10 | 0 | 2 |
| A10 | 6.67 | 14 | 0 | 2 |
>TRINITY_DN114469_c0_g1_i8 from sample A1 / Example spliced isoformACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAAT
CCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCC
TCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAA
TCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAA
AAGAATATCATAGACGCAGCAGGTAGTATTCAAATACTCAATTATCTTTGGCCTTTTGAATTTATGACTGTAGGCTGTAATATATTTCTGTGTGAGGCTCTGGTTTTACAGTGGCAGATTGTTTTCAG
>TRINITY_DN114469_c0_g1_i6 from sample A1 / Example unspliced isoform:TATGAATGAAGAAAGGAGgttgttacttttattttctgtgatatgagctagctatgctctgctttaattgatatatttaaccagtaatatctctgagtttattttttattcacgcttatattttatgataatattccagGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAG
AGTCCAGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAA
TCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAG
Intron 3 GTATGCCTAT ... TTTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.94 | 33 | 0 | 1 |
| A2 | 24.59 | 46 | 1 | 15 |
| A3 | 8 | 23 | 0 | 2 |
| A4 | 24 | 19 | 0 | 6 |
| A5 | 46.67 | 8 | 0 | 7 |
| A6 | 0 | 3 | 0 | 0 |
| A7 | 26.67 | 11 | 0 | 4 |
| A8 | 9.09 | 10 | 0 | 1 |
| A9 | 28.57 | 10 | 0 | 4 |
| A10 | 15.79 | 16 | 0 | 3 |
>TRINITY_DN115515_c0_g1_i18 from sample A2 / Example spliced isoformGCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAGGCACCT
CTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTATTGGAT
GGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGTTCATCGTAACCAGTCTTTCTTGGTG
GCGAGCAGGCAGAAACTGATCGAATCAATTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAG
GCAGATGGGAGGCGGTCGGCACATGCAGGAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCG
ACGTCGTCGACGATCCACATCTCTTGTGAGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGC
GGCGGCGTTCTCCATCTCCACCACTGCGACGACGTTCTCCATCCCCCCCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAG
TACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACA
TTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTGAGAATGTTGATCGCAGGGCTGT
TAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATT
CCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGT
ATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAA
GAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATG
AAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTG
>TRINITY_DN115515_c0_g1_i17 from sample A2 / Example unspliced isoform:ATATGGACTATTGGATGGGAAAgtatgcctatttcttattttttcatctgcaaaatcaaatacgcttttatttttcttaattgtagtaggaggatatggatgctgcagtgatgtattgtaaatatctatctaatgagacttgttgctatcaattatgggaaataagtagagaatcacatcacaatagttattaggtagga
ttactggttataaagttataaactaatacgtaatgttctatatctgtttttcacagGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAA
GCTGAGGAAACAAGGAAGAAAAAG
Intron 4 GTAACGTGTG ... GATATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.93 | 5.8 | 10 | 18 |
| A2 | 60.54 | 10.8 | 21 | 12 |
| A3 | 38.46 | 16 | 15 | 5 |
| A4 | 73.27 | 4.4 | 13 | 11 |
| A5 | 67.92 | 2.4 | 2 | 8 |
| A6 | 53.71 | 17 | 17 | 22 |
| A7 | 61.76 | 13 | 22 | 20 |
| A8 | 47.23 | 35.2 | 36 | 27 |
| A9 | 63.34 | 16.8 | 27 | 30 |
| A10 | 63.16 | 7 | 15 | 9 |
>TRINITY_DN114469_c0_g1_i7 from sample A1 / Example spliced isoformTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTG
ATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCA
AAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAA
GGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATA
TTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTC
TGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTA
TTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCCATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTTCAATCCTCTAAGTGAAAATATAAGCAAG
>TRINITY_DN114469_c0_g1_i1 from sample A1 / Example unspliced isoform:ACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAAT
CCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCC
TCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAA
TCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAA
AAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAA
CTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATC
ATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTA
ACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTT
GTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTA
GGGGTTTATGGTGCCAATATTCTGgtaacgtgtgatgtgtttctgtggcaatttcacttgttaacgagtggctgtattctttcattatgtttttattattgaaatcttggttagtggtgctaagcctcagcaaagttggtatcaaatcagttactgcagttttgagtactctgagttcgatgatatggcagGTGCAAAGA
CGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAACTACAAAATCAAATGTTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAG
ATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATTTGTGGTCTTTCAGTCAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAAT
TTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTATTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCC
ATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTTCAATCCTCTAAGTGAAAATATAAGCAAG
Intron 5 GTAAGTAAAC ... TGGTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.17 | 11 | 19 | 10.4 |
| A2 | 85.23 | 2 | 14.4 | 8.9 |
| A3 | 54.7 | 6 | 2.7 | 11.8 |
| A4 | 83.64 | 1 | 5.3 | 4.9 |
| A5 | 86.1 | 2 | 13 | 11.8 |
| A6 | 80.42 | 7 | 25 | 32.8 |
| A7 | 72.06 | 7 | 16.4 | 19.8 |
| A8 | 64.5 | 22 | 41.4 | 38.7 |
| A9 | 84.45 | 8 | 38 | 49 |
| A10 | 77.07 | 4 | 13 | 13.9 |
>TRINITY_DN114469_c0_g1_i7 from sample A1 / Example spliced isoformTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTG
ATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCA
AAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAA
GGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATA
TTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTC
TGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTA
TTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCCATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTTCAATCCTCTAAGTGAAAATATAAGCAAG
>TRINITY_DN114469_c0_g1_i1 from sample A1 / Example unspliced isoform:ACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAAT
CCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCC
TCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAA
TCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAA
AAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAA
CTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATC
ATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTA
ACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTT
GTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTA
GGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGA
CGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAgtaagtaaacatatcatgggtaagaagcattggaggatttttaaagaactacaaaatcaaatgttgttactgctaacaagcgtgaaggtctagccagtattatgtcttctgaagttaatactgaaacag
atttgtggttggttggtagATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATTTGTGGTCTTTCAGTCAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAAT
TTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTATTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCC
ATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTTCAATCCTCTAAGTGAAAATATAAGCAAG
Intron 6 GTATGTTAAT ... CATTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10 | 9 | 2 | 0 |
| A2 | 23.08 | 5 | 1 | 2 |
| A3 | 6.67 | 7 | 1 | 0 |
| A4 | 41.18 | 5 | 3 | 4 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 0 | 6 | 0 | 0 |
| A8 | 0 | 8 | 0 | 0 |
| A9 | 7.69 | 12 | 2 | 0 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN102461_c0_g1_i2 from sample A4 / Example spliced isoformGGAAGAGCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAG
GCACCTCTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTA
TTGGATGGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGGCAGAAACTGATCGAATCAA
TTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAGGCAGATGGGAGGCGGTCGGCACATGCAG
GAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCGACGTCGTCGACGATCCACATCTCTTGTG
AGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGCGGCGGCGTTCTCCATCTCCACCACTGCG
ACGACGTTCTCCATCCCCACCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAG
AGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAG
CGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCC
GGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTTTCTCTCCCTAATGCCAGTGGCATTTGTGTTGTAGTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAA
TTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCC
AACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCA
TAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAG
CTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCC
AGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGC
AGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAA
GTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAACTACAAAATCAAATG
TTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAGATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATTTGTGGTCTTTCAGT
CAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAATTTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCA
>TRINITY_DN102461_c0_g1_i9 from sample A4 / Example unspliced isoform:GGAAGAGCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAG
GCACCTCTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTA
TTGGATGGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGGCAGAAACTGATCGAATCAA
TTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAGGCAGATGGGAGGCGGTCGGCACATGCAG
GAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCGACGTCGTCGACGATCCACATCTCTTGTG
AGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGCGGCGGCGTTCTCCATCTCCACCACTGCG
ACGACGTTCTCCATCCCCACCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGgtatgttaattggaatttcaaatcatattatggctctggatattatgaat
acagtgatatttgtgattggcacaattttttactttggttgtaatcattattcagCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGGTATGCAGCTGAAGTTTATGCTTTACAGTGATTTGTTGTCAAGTTG
TAAGATGCATATTTTAGGGTTTGTTACTTATTTTTCTTTGTCTTTATTAAAACTTTGTGCTAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAAT
CACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGT
CTTCGTGAGAGTCCGGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTTTCTCTCCCTAATGCCAGTGGCATTTGTGTTGTAGTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAA
TCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGA
ATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCA
GAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAA
GTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCC
ACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTT
TTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGC
TAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAAC
TACAAAATCAAATGTTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAGATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATT
TGTGGTCTTTCAGTCAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAATTTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCA
Intron 7 GTGAATTACT ... GCCTCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.77 | 6.8 | 3 | 11 |
| A2 | 64.76 | 2.2 | 7 | 1 |
| A3 | 40.54 | 11 | 11 | 4 |
| A4 | 94.55 | 0.6 | 14 | 2 |
| A5 | 76.47 | 2 | 10 | 3 |
| A6 | 70.06 | 11 | 45 | 6 |
| A7 | 78.21 | 3.8 | 19.3 | 7 |
| A8 | 73.14 | 11 | 34 | 24 |
| A9 | 63.34 | 15.8 | 29.7 | 24 |
| A10 | 80.95 | 2 | 14 | 3 |
>TRINITY_DN114469_c0_g1_i7 from sample A1 / Example spliced isoformTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTG
ATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCA
AAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAA
GGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATA
TTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTC
TGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTA
TTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCCATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTTCAATCCTCTAAGTGAAAATATAAGCAAG
>TRINITY_DN114469_c0_g1_i5 from sample A1 / Example unspliced isoform:CAAGAATACCACAATCGTGACATGTATGCTAGCAATTTTGGGAACTTTATTTATTTTTTCTGGAATTTGGTTTGAGTCTTGTTTTTGTCTGCAAGTTTTTGCTGATTTTTGTTTTCTGATCTTTGTCCCAGTTTCTCTCCCTAATGCCAGTGGCATTTGTGTTGTAGTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAA
CCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGA
GGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCT
AGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGA
AAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGG
AAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGA
AGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTT
CTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCA
TTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAACTACAAAATCAAATGTTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAGATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATG
ATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGgtgaattactagaaatagttgatttgtggtctttcagtcaatgaaagacttaaacatgaacttggtggaactttttccaacaaataatacaaattttaataaatttgaagtttattttggcttaacgtccctttatgcctcaatag
GTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTATTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCCATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTT
CAATCCTCTAAGTGAAAATATAAGCAAG
Intron 8 GTATGCAGCT ... TTTGTGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.14 | 22 | 2 | 7 |
| A2 | 36.36 | 14 | 0 | 8 |
| A3 | 27.59 | 21 | 0 | 8 |
| A4 | 27.91 | 31 | 5 | 12 |
| A5 | 27.27 | 8 | 1 | 3 |
| A6 | 20 | 4 | 0 | 1 |
| A7 | 25 | 15 | 0 | 5 |
| A8 | 22.22 | 14 | 0 | 4 |
| A9 | 30 | 7 | 0 | 3 |
| A10 | 50 | 4 | 0 | 4 |
>TRINITY_DN102461_c0_g1_i2 from sample A4 / Example spliced isoformGGAAGAGCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAG
GCACCTCTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTA
TTGGATGGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGGCAGAAACTGATCGAATCAA
TTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAGGCAGATGGGAGGCGGTCGGCACATGCAG
GAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCGACGTCGTCGACGATCCACATCTCTTGTG
AGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGCGGCGGCGTTCTCCATCTCCACCACTGCG
ACGACGTTCTCCATCCCCACCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAG
AGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAG
CGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCC
GGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTTTCTCTCCCTAATGCCAGTGGCATTTGTGTTGTAGTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAA
TTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCC
AACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCA
TAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAG
CTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCC
AGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGC
AGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAA
GTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAACTACAAAATCAAATG
TTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAGATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATTTGTGGTCTTTCAGT
CAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAATTTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCA
>TRINITY_DN102461_c0_g1_i9 from sample A4 / Example unspliced isoform:GGAAGAGCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAG
GCACCTCTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTA
TTGGATGGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGGCAGAAACTGATCGAATCAA
TTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAGGCAGATGGGAGGCGGTCGGCACATGCAG
GAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCGACGTCGTCGACGATCCACATCTCTTGTG
AGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGCGGCGGCGTTCTCCATCTCCACCACTGCG
ACGACGTTCTCCATCCCCACCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGGTATGTTAATTGGAATTTCAAATCATATTATGGCTCTGGATATTATGAAT
ACAGTGATATTTGTGATTGGCACAATTTTTTACTTTGGTTGTAATCATTATTCAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGgtatgcagctgaagtttatgctttacagtgatttgttgtcaagttg
taagatgcatattttagggtttgttacttatttttctttgtctttattaaaactttgtgctagAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAAT
CACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGT
CTTCGTGAGAGTCCGGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTTTCTCTCCCTAATGCCAGTGGCATTTGTGTTGTAGTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAA
TCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGA
ATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCA
GAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAA
GTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCC
ACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTT
TTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGC
TAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAAC
TACAAAATCAAATGTTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAGATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATT
TGTGGTCTTTCAGTCAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAATTTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCA
Intron 9 GCTCATCACC ... AAGAAAGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.65 | 12 | 28 | 20 |
| A2 | 46.65 | 15 | 17 | 9.3 |
| A3 | 63.97 | 6 | 12 | 9.3 |
| A4 | 69.61 | 4 | 12 | 6.3 |
| A5 | 60 | 8 | 17 | 7 |
| A6 | 63.64 | 2 | 5 | 2 |
| A7 | 64.25 | 14 | 34 | 16.3 |
| A8 | 70 | 3 | 8 | 6 |
| A9 | 55.78 | 7 | 8 | 9.7 |
| A10 | 81.05 | 3 | 12 | 13.7 |
>TRINITY_DN115515_c0_g1_i18 from sample A2 / Example spliced isoformGCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAGGCACCT
CTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTATTGGAT
GGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGTTCATCGTAACCAGTCTTTCTTGGTG
GCGAGCAGGCAGAAACTGATCGAATCAATTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAG
GCAGATGGGAGGCGGTCGGCACATGCAGGAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCG
ACGTCGTCGACGATCCACATCTCTTGTGAGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGC
GGCGGCGTTCTCCATCTCCACCACTGCGACGACGTTCTCCATCCCCCCCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAG
TACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACA
TTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTGAGAATGTTGATCGCAGGGCTGT
TAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATT
CCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGT
ATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAA
GAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATG
AAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTG
>TRINITY_DN115515_c0_g1_i11 from sample A2 / Example unspliced isoform:GCTTTATTTTGGCGTAGAGGAGAGATAACTTGCGTTGTAACCCTGTTTTAGAAAACTAACTTCGACATTGGATGGGCCTGGTGAAACCTCAGCGACTTTCTTAAAACGAGAGGAGAGCCACGATTCGAACCAGATTCACAGTAGCGGAGCCGAGCTTTAGAGTATTTCCAAGATGTCGGGCGGTTTCTTTAGAGGCACCT
CTGCAGATCAGGACACCCGTTTCTCCAACAAGCAGGCGAAGCTCCTGAAGTCCCAGAAATTTCCGGCCGAGTTGGATCAGTTGGTTGACATGACAAAAGTGAAAATGGATGTTATTAGGCCTTGGATAGCAAATAGGGCCACTGAGTTTCTTGGCTTCGAGGATGAAGTGTTGATTAATTTCATATATGGACTATTGGAT
GGGAAAGAGGTAGATGGCAAGCAAATTCAAATTCAATTAACAGGATTTATGGAAAAGAATACAGGAAAGTTTATGAAGGAGCTGTGGAGTCTTTTAACTAGTGCACAGAAAAATGCTAGTGGTATACCTCAGCAATTCCTGGATGCGAAAGCTGAGGAAACAAGGAAGAAAAAGTTCATCGTAACCAGTCTTTCTTGGTG
GCGAGCAGGCAGAAACTGATCGAATCAATTATGAAGTTCAAAAGAAAAAGGAACAAGAGGAAAGTGAAGCGGAGCTGGAACGGAAGAACAAGATAAATGCTGACTTAGAGACGGCAAAGAATGCAGCAGCAGCAGCGGCAGTTACTGCAAAATCTTCTTTAGGAAAGGCCGCATTGCATTCAAATCCAGATGAAGAGAAG
GCAGATGGGAGGCGGTCGGCACATGCAGGAGGAAAGAATGGGGACACAAGATTATCATGTGATGGAGATTCTCCACTGTCTCATCGCTCGTCCTCATTCTCAAGATCAAGGAGCCACTCATATTCTCCATCAAAGAGTCCACCCAGGTCACCTCCTTTGAACAGAAGGCATAGGTCACGTAGCATCTCTAGATCACCTCG
ACGTCGTCGACGATCCACATCTCTTGTGAGGCGTGGTCGTTCTCCCAAACAATCCCCACCTCGACACAAGCGATCACCACTGTATACTCGGTCTCCAAGGCGGAGATCTCCATCTCCTTGGAGGCGACGCCCATCCCCTCCGATGCGGCGGCGGTCACCACCCCCACCCGTGCGGAGACGTTCACCGTCCCCACCCTTGC
GGCGGCGTTCTCCATCTCCACCACTGCGACGACGTTCTCCATCCCCCCCTTTGCGGCGACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAG
TACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACA
TTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCCTCCAATGTACCAGgctcatcacctccttatcaaagttcacctagtacatcacattctcctgagcgcaataaaaagactcagactcatatgaatgaagaaaggagGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTC
GTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAATCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATG
CCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTC
TGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAA
AACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTA
ACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTG
Intron 10 GTATGCTAGC ... TGTGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.09 | 29.7 | 0 | 7 |
| A2 | 16.13 | 26 | 1 | 5 |
| A3 | 26.22 | 25.3 | 2 | 9 |
| A4 | 29.59 | 16.7 | 0 | 7 |
| A5 | 20.48 | 11.7 | 1 | 3 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 6.25 | 30 | 0 | 2 |
| A8 | 29.41 | 12 | 0 | 5 |
| A9 | 16.67 | 20 | 0 | 4 |
| A10 | 20.31 | 35.3 | 1 | 9 |
>TRINITY_DN114469_c0_g1_i8 from sample A1 / Example spliced isoformACGGTCACCATCTCCACCCTTGCGGCGGCAGGCACCGGTGCCAAGATATCGTAGGCGATCACCTGTTCCTTCTCCGAAAAAGCATCAAGTGGATTCTCAGTCTCCTCGCTGGCGAAAGAGCAGCAGGAGCAGAAGCCCTCAGTACAGGAGTAATTGGAATATGAACAGAGAGCATGGCAGCCGTTACAGTGACATGGAAT
CCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAGGGCCC
TCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATACCACAA
TCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAA
AAGAATATCATAGACGCAGCAGGTAGTATTCAAATACTCAATTATCTTTGGCCTTTTGAATTTATGACTGTAGGCTGTAATATATTTCTGTGTGAGGCTCTGGTTTTACAGTGGCAGATTGTTTTCAG
>TRINITY_DN114469_c0_g1_i5 from sample A1 / Example unspliced isoform:CAAGAATACCACAATCGTGACATgtatgctagcaattttgggaactttatttattttttctggaatttggtttgagtcttgtttttgtctgcaagtttttgctgatttttgttttctgatctttgtcccagtttctctccctaatgccagtggcatttgtgttgtagTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAA
CCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAGAAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGA
GGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATGGGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCT
AGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCAAGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGA
AAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAATTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGG
AAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAAACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGA
AGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTATATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTT
CTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGCAAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCA
TTGCCGTGGATGCGGTTTGTGTAACACCAGTAAGTAAACATATCATGGGTAAGAAGCATTGGAGGATTTTTAAAGAACTACAAAATCAAATGTTGTTACTGCTAACAAGCGTGAAGGTCTAGCCAGTATTATGTCTTCTGAAGTTAATACTGAAACAGATTTGTGGTTGGTTGGTAGATCAGAAATATGTCAACTAGATG
ATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATTTGTGGTCTTTCAGTCAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAATAAATTTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAG
GTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTATTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCCATATTTGTACCATATTTTACTAAGTGAAATGATTTTTTTTTT
CAATCCTCTAAGTGAAAATATAAGCAAG
Intron 11 GTAAGTAAAC ... GGTAGATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.85 | 12 | 19 | 9 |
| A2 | 64.1 | 7 | 16 | 9 |
| A3 | 54.84 | 7 | 3 | 14 |
| A4 | 100 | 0 | 5 | 6 |
| A5 | 67.57 | 6 | 14 | 11 |
| A6 | 81.08 | 7 | 25 | 35 |
| A7 | 61.29 | 12 | 18 | 20 |
| A8 | 61.43 | 27 | 44 | 42 |
| A9 | 78.76 | 12 | 39 | 50 |
| A10 | 65.22 | 8 | 14 | 16 |
>TRINITY_DN40756_c0_g1_i1 from sample A10 / Example spliced isoformGGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAG
GGCCCTCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATAC
CACAATCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAG
AAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATG
GGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCA
AGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAA
TTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAA
ACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTA
TATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGC
AAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTATTATGCATCAT
GACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTCTTGCCATATTTGTACCATATTTTACTAAGTGA
>TRINITY_DN40756_c0_g1_i2 from sample A10 / Example unspliced isoform:GGAATCCAGGGGATATCGAGATAGAGCTCAAGCTAAAAGATCTCCTGATCGTGAGCATCCTGATAGAGAGGAGAATGCATATGATAGACCTCAACATGTACGTTCTGGAGGACGGACTTTCTTAGAATCTCAGAATTACCATCGACATTTGCCAATACAATCACGCTCACCAAAGCGTGATATAAAGATGTCCAGTGGAG
GGCCCTCCAATGTACCAGGCTCATCACCTCCTTATCAAAGTTCACCTAGTACATCACATTCTCCTGAGCGCAATAAAAAGACTCAGACTCATATGAATGAAGAAAGGAGGCGGTTGAGTCCGCAACATAGCCAGATTGAACGAGTTCGTGAACAAAGGAGTCTTCGTGAGAGTCCAGAAATAAGAAAAATACAAGAATAC
CACAATCGTGACATTGAGAATGTTGATCGCAGGGCTGTTAAGGTCAACCTATCTAAAAGGAGGGATATGCAAGCACCGCATGCTCCTGAAAGAAAGGAGTACGGTCTTACAAATTTAGACAGTAATCAAGAATCTCCAATTGACATGCCACTGAATCTTTCTGGTGAGAATCGTGATCGTCACGAGAGCCCTGAGCCAAG
AAGAAAAGAATATCATAGACGCAGCAGTATTGACCATTCCCAGAGGAGGAGAAATATTCAAACTTATACATCAGAAGAAATTGAATATGGACCTGGGAGATTGGATCATGGCCGCCTTTCACCGAATAATATTCCAGCCAACCGTTCTGGTGTAAATCGTCTCATTATGGAGCCACGGTCTCATATTGAATATGATGATG
GGGAACTTACAAGGGATGTTGATGTTGATGTTGATGGTATACTCTCTAGGGTTGGTGCTAGTCGCAAGCCAATCCAAAAGTTGGAGTCAGTGAACCTGGTGGTTGGTTCTGATTCTGATGCAGCAGAAAGTGAGGATCATAGAAAAAAACATGCAGTGAAAAGAAAAGCAAAGAGGGATGAAGATGGAAGTATGTCTCCA
AGATCATGTGAAGAAAGACGCGAGGCAAAAAGGAGGAAGAAGGAAGAAAAAAAATTACGCAAGGAGGAAAAACGTAGAAGACGTGAAGAAAGGCACAGAAGAAAAGAGGAACGCAGAGCAAGCAAGTCAAAAGGCAAAGCTGCAGTAACTGTTACGCCACCTGAAAAGGAATACAGTGGAGCAGATGACTCAGATGACAA
TTGTAACGACAGGGATCAAACTTGTAAGGGTCATGATGAAGAAGTGGAAAATGAGCAGCAGAGACTGGAGATTGAGTTGCGAAGAAAAGCTTTGGAATCTTTGAGGGCAAAAAAGGCTATTAGCCACTAAATAGTCTCCAGTGGCTCATAGTCTTTCAAGACTGCTATGTTCTTATTGAGTTTCATCAAATGAATCAAAA
ACTTTGTTTTCCTTCCTGTGCAAGATATTGCAGATTTATTTTTCTGAAGATCTGAGCCAATTTGGATAGTTCATTGAGGGTATGTAGTAACTCTCAGTGTTTCTGTTTTTGATGTCCTGTATGTTTTACTTCTGGCAGCAGGAAGTTGAGCTCTATCCATGTTGAGAATTTGAAGACTTTCAAACTTTACAGGGGCTGTA
TATTAGGGGTTTATGGTGCCAATATTCTGGTAACGTGTGATGTGTTTCTGTGGCAATTTCACTTGTTAACGAGTGGCTGTATTCTTTCATTATGTTTTTATTATTGAAATCTTGGTTAGTGGTGCTAAGCCTCAGCAAAGTTGGTATCAAATCAGTTACTGCAGTTTTGAGTACTCTGAGTTCGATGATATGGCAGGTGC
AAAGACGTTTAGCTTAGTAGGATCTGGAAGCAGCAAATGCAATAGCATTGCCGTGGATGCGGTTTGTGTAACACCAgtaagtaaacatatcatgggtaagaagcattggaggatttttaaagaactacaaaatcaaatgttgttactgctaacaagcgtgaaggtctagccagtattatgtcttctgaagttaatactga
aacagatttgtggttggttggtagatcagAAATATGTCAACTAGATGATTTGGTTGAGCAAGCCATGTGCAGAAAGAACCAATTTATGATCTACGGAACAGGTGAATTACTAGAAATAGTTGATTTGTGGTCTTTCAGTCAATGAAAGACTTAAACATGAACTTGGTGGAACTTTTTCCAACAAATAATACAAATTTTAA
TAAATTTGAAGTTTATTTTGGCTTAACGTCCCTTTATGCCTCAATAGGTTGGCAGCTTTTAGCAAAAGTCGTTGGGGACTTGTCTTTATTATGCATCATGACGATCTGTGCTCCTTTCTTACGCTCTGCTGAGCATATGCACCTTGATTATGTCAGCTGGTGTAATTTTTTATGCCAAGGTTGTCTCGTTCCATTTTCTC
TTGCCATATTTGTACCATATTTTACTAAGTGA