sp|Q9SA73|OLA1_ARATH ----> Obg-like ATPase 1
Intron 1 GTGAGCATCT ... AACCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.89 | 32.3 | 13 | 56 |
| A2 | 68.34 | 24.3 | 5 | 44 |
| A3 | 67.47 | 29.3 | 15 | 51 |
| A4 | 73.85 | 13.3 | 6 | 31 |
| A5 | 71.43 | 10 | 5 | 20 |
| A6 | 66.39 | 201.3 | 20 | 307 |
| A7 | 66.9 | 243 | 19 | 381 |
| A8 | 67.33 | 280.7 | 56 | 461 |
| A9 | 65.23 | 215.3 | 11 | 325 |
| A10 | 66.91 | 180.7 | 21 | 291 |
>TRINITY_DN109453_c0_g1_i5 from sample A2 / Example spliced isoformCTTGATCAAAATTCATGGGGCCTTTCGGATGTTCGAACATTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTG
TCAGTGCTTCTCCATACAATATTTCGAATACAATCACAAGCGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTTTCTTCTCACCTCAAGATTGGCATTGTTGGACTGCCGAATGT
AGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCTCCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGCAGGGTTGGTACGAGGAG
CACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCTCACATTCGAGCCGTAGATGGAATTTTTCATGTTTGTAGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAGGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGAC
CTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGACTTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGA
CTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACATTCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAACTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAGTGCTCTTTCTAAGATCGTAAAGACTGGTTTTTCTGCCA
TAAACCTCATATACTTTTTCACAGCAGGCCCAGATGAGGTGAAATGCTGGCAAGTTAGAAAACAGATAAAAGCTCCTCAGGCTGCAGGGGCCATCCACACTGATTTTGAAAGGGGATTTATTTGTGCAGAGGTAATGAAGTTCGAGGATTTGAAGGAGTTGAATAATGAATCAGCTGTCAAGCACTAGGCAAAGGCAAAG
TAAAAGGATCATGTTTTTTAGTTAGTGGGTCTATGTCACTCTGGATACAAACAAAGTGAGGCTGCGGGCAAGTACAGACAA
>TRINITY_DN109453_c0_g1_i11 from sample A2 / Example unspliced isoform:CTACTGTTCTTGGGGCAGTATCTTGTGCCATAGACAATGTTTGCTCTCTGGTTTCAAGAATAACAGTTTTACCTGCCTCTTGCTTGATTCTTTTATGAATCTGCTTGTTTACAGTCTTCTTCTTGGGGTCAAACATGAATTTCTCTACACCAAGATTTACGACATGTGCTTCTGCATGTTCTTAAGGAATCCGGGACAAA
TTCAGCCAATAAAGAGAAACCAGCAGTACTCTTTACCTGTTGAAGTCTCCCCTGTGCCTTGAACAGATAAATCCATTTCAGTATCAGACCTTCTGCTAAAACTGTCCAGAGATGTGGTCTCTTGTGTTTGGGATAGTTGATCTTTAGGTAAGGGTTGGAATTGAAGGAGGTGGAGTCATCCCTGTGTTGTGACTTGGGGT
CACGTTTTCTATTGATATTGAGGTCTTCAATAGAATGGACAGGATTCCCTGTAGTGGTAACAACTGTAGAAGTTGGATTACCTGTACTGAAATTTCCTGTTGGACTGGAAATACTGCCTGTGCCATGGACCGATTTTGACGTTGGATCCTGTAAGATTGCTTTGAGAAGAACCAGGAATCTCCTTTTTATAGGATAACTA
GCACCTTTAACCAACTGATAAGTTAACCCTGTACCCTGCAAAGCATTTCTTGAATTTACTTGTCATTTTCCTTTCTAGCTTGTGGCTGGCTCATTTTCTCCTGCCAATTTTCGGCATTCATAAAGATGTTTTCTTGCAGCATCTTTTCATGAGATTATATCCCACCTATGTTCTAACTCTTCATATGTGCAGGAACGGCC
ATCTAGATTGTGCATTTTAAAGGGTTCCTTGAAAAGATGGTATTTCTCAGTTCTTTGGCTCCATTCAAGGCATACCAAAATCTAGAAGTGTGTAAGCTTGCATTGTGAGGGGATAATACAGGAAATTAGGAATTGTCTCTTTGGTTTCCTTTTCAGGGTGGAATTAACCCATGCATTGTGATGATAAGTGATTTCCCTAA
GCACAAATCTATCTGCTATGCATTTGGGCAAAGAGTGAGGGGCTTTAGTGGCTCCATATATACCTTAACTGTTCACTTTATTTCAACATGTATAATGAGCTCACTTTCAGTTTTGAATAGAAAATTCCATGGGTAGATTCTGTGTCCTATGTTGTTAGAAGAAATGCATTATTTTCTTCAATTAGAGCTAAATGCCTGGA
CACAAACCAATATATAAGTAATGCCAAAGGTAATTATATTGTAAAGCTCACTAGAGTCTTCTAACCTGGGGTTGATCTTAGTCCAAGCAATGAACTTTAAGTTTGGGTTTCGGGAGTCCAAATGAGCAAATTCAAGATCAAGGCACGTTCGGGTTTCATTGAAAGTAAATCTCATAATGAAATATCATATAGTTTCTAAA
AGTTGATTTTGACTGTTGGACTATTTGAGTAGAATTCTCCTCGGTAATTGATATTGCCAGAGTGCTACAAATCACCCATATGGGATTGAATTATGTCAGGATCACATTCATGTAACCACATCGTACAAATAATGTTCTATATGCTTATGCCCATTGTTTTATCTACCATTGTGGGATGTGGATGGAATCCATTGTGGCCG
TTAGATAAAAGCCTACTCTGAATATGATTATCTACTGATTGAGGCAAAAGTAAAATGTGTCAGACAAACAAGATCTTAGGGATACAGGATTGCGTTTTCTAATAATCTAAACATTCAACTATGAATTAACATGATTGTATTTGTTTAAAGCACTAGGCAAAGGCAAAGTAAAAGGATCATGTTTTTTAGTTAGTGGGTCT
ATGTCACTCTGGATACAAACAAAGTGAGgtgagcatctgttcatggttctttgtatttttgtttcttaagcttggggattttttgttgaatagttgacaatttttggaaccatgcagGCTGCGGGCAAGTACAGACAAGAGGGGAAAACGTATGTGGTCCAAGATGGTGACATCATTCTTTTTAAATTTAATGTCTCTGG
CGGGAAGAAATGATTTATTGTAAGGTGTTTTTTGCAATCATTTAACGTCATTCTATGTGGGATAATACCAAGGACACAAATTGAGTTTTTATTAGATTGAATTAAGGCTCATGCTCAGCAAATGTGTATTGCCTACAGCCATTGACGTTGATTAGGATAGCATTAGCTGATGTTCTGTCATATGGTCTGTTTTTTAAAAT
ATAATGCTTTTGATGGTTCTCTGTTGTACAATAAAATATCGGTGCAGTTCAATGTCATTATACACAGGTGTAGTGTTTTAGTTTGAATGGGGTAGTTGGAGTTGGGTAAATTGCATGTCCACATTTTTGCCTCTCTGTATTAGAGTGATGAAAGTCACAATACAAATTAATTGGATCTTTTATCAATTTGCTTATCAAGG
Intron 2 GTCAGTTCCT ... CTTTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.93 | 153 | 10 | 29 |
| A2 | 16.3 | 77 | 4 | 15 |
| A3 | 24 | 95 | 8 | 30 |
| A4 | 17.78 | 74 | 6 | 16 |
| A5 | 24.44 | 34 | 4 | 11 |
| A6 | 12.9 | 54 | 1 | 8 |
| A7 | 14.17 | 218 | 3 | 36 |
| A8 | 13.85 | 224 | 0 | 36 |
| A9 | 16.82 | 178 | 0 | 36 |
| A10 | 22.11 | 155 | 0 | 44 |
>TRINITY_DN118050_c0_g2_i6 from sample A1 / Example spliced isoformGCCGAAGGTGCTGTTTAAATGCCATATTTTTTAAAAGCTAATGTTGAGAAAAGAAATAAATCTTTAGCAATAGAAAATTAAATAACTAGAAGTACTTGATTGGCACTTTATAGAAATGACGGGTTCTTGAACAAGTTTGGAAGTGCATTTTGCTATAGCAGTGCCCTTAACATTCAAAAGCACTGATAATAATATCAATT
CTCTTCCAGGCTATGCTACAAGAATTTCTTGGCAGAAAAGATTTAGATAAGCATCTTGATGCTGATGAAGCTGTAGTACTTGGATCAGCACTTCATGCTGCAAATTTGAGTGATGGGATCAAACTAACCCGCAAGCTAGGAATGATTGATGGTGCAACATATGGTATCATACTGGAATTAAATAGTCCTGATCTTGATGA
TGAGAGTAATCGACAAGTACTTATCCCACGCATGAAGAAGCTTCCAAGCAAGGCATTCAAGTCTGTAAAATATAGCAAGGACTTTGAAGTTTCACTTCTATATGATCCTTCTGACATATTACCACCAGGGGTTTCCTCTGGCAAGATTGCAACTTACCACGTTTCAGGTTTAACTGACACCTACACGAAGTATTCAACAC
GAAACCTCTCTGCACCAATAAAGACAAACTTACACTTTTCCCTGAGCAGAAGTGGTCTGGTGTCATTTGATCGTGCTGAGACTGTAATTGAAGTTTCAGAATGGGTTGATGTTCCAGTGAAAAATTTAACAGCTGAAAATTCAACCTTAATTCTGTCAAATGCATCATCCGAATCAAGTACAAGTCCAACCAGCTCTAGT
GAAAAGGAAGAACGCAACATAAGTGGTGAGGGACTTGAGAATAACACTACAACTCCTGAAAAAGAAACTCAAGATTCAAAGCCCGTAACTGAAAAGAAGTTGAGAAAAAGAACTTTTAGAGTTCCTCTTAAGGTAACGGATGTTACTGATGGTCCTGGAAGATCCCTCTCTAAAGAGTCAATTGCAGAAGCTGGAGTTAG
GCTTCTTGAACTGAACCGGAAAGATGCGGAGAGGAAAAGGACAGCTGAACTTAAAAATAGCCTTGAGGAATACATCTATTCTACTAAAGAGAAGTTGGACTCATCTGAGGACATTGAGAAAGTCTCAACTCAAGAACAACGCGACTCCTTCAAAGGCAAACTTGATGAGGCTCAAGATTGGTTGTACATGGATGGAGAAG
ATGCTTCTGCAGCTGAATTCCAAGAACACCTTGATTCACTTAAAACAATTGGAGATGAAATATTTTTCAGATTGAAGGAACTGAGTGCTCGACCTGTAGCAAGTATTTATGTTCGGGAATATCTTGACGGATTGCATAAGACATTGGACTCATGGGAGAAAAACAAACCTTGGATCGCCCAATCATTTAAAGATGAGATT
TTGAATGAAGCGGACAAAATAAAGAAATGGCTTGATGAGAATGAAGCTAGACAGGCCAAAACTCCAGGATACATGGTTCCCATCTTCACATCTGATGAAGTATATGGAAAGGTTGAAAAGCTTCAAGACAAGGTGCTCAAGATCAGCAAAATACCTAAGCCAAAGCCAAAGGTTGAAATACCTCAAAAAAATGACTCTGT
CAAGGCTGACAACGAAGATGAGGTCACATCCACATCAAGCAACAGCACAGATAACGAGACTGCCGATGAAAAGATACATGATCCAAGTGGACCTGAAGGACACTCACAGGGATCAAATGGTGAACAAGATGCCAACGAGGAACCTAATGATGAACTATGAGAGGAGTAAAATGATAGAAATCAAGAATTTAAAAAATATG
GAAGACCTACATACAATTAGGGTGCAGAAATTGTTAGTGAATGTACAGAAAGTGTTTGGCAGGGCTAATGTCACCATCGATTTTGATCAACATCAATTTTTCCTGTCTTACATTCCGGCAATAGGCAGGGGATGCATCTCTTATGTAACCCACAAATGGTGTCTTTTGTAAACGTAGGATGGTGGAAAGCTATGTCGCTA
ATACTTACCAAACGTTTATAACATTCCTGGTTATATTTTTAGGAAAAAAATCCCCCCCATGCATATCAAAAAACAGTTCGATATGCATCATTGAAATCTTATTTTCATTTTATCAATAGCGATCAGTATTTCTTTTTGCCAAAAAAACAGAGCACATATAGCGATCAGTATTTTATCATTGAAGTTTATTATCAGCGAAT
GAATTATAATAGCCTTTCCTTCAGTTTTCATTTAAGAACAACGCATTTTTACTTCTGCAATAAATCATAATTGGGTATTTGTTTTCCAACTTCATTGATGTAGAATAATACTTTCTGTTTTATTTATCACATTAGTTTCATTATTTCTATTTAAATATTTAAAGTCATGTTGAGGACTTTGGCAAAGCCCGATCAAATGG
ACGAGAGGTGATCTATTGAACATTCTTGATTTGCATTCCTTGTAGATGCGCGGCTCTCATGTTTAAGAGTAG
>TRINITY_DN118050_c0_g2_i12 from sample A1 / Example unspliced isoform:TTAAGGATATAGCAGATTTACATAACTATTCCATTCTGTAGGCTCAAGATTGGTTGTACATGGATGGAGAAGATGCTTCTGCAGCTGAATTCCAAGAACACCTTGATTCACTTAAAACAATTGGAGATGAAATATTTTTCAGgtcagttcctaagctcattagcattcaagttcataatggatgtcctagttaaattgca
ctgatattaatttgaataaaagatatagctgacaaggcagctttccacagATTGAAGGAACTGAGTGCTCGACCTGTAGCAAGTATTTATGTTCGGGAATATCTTGACGGATTGCATAAGACATTGGACTCATGGGAGAAAAACAAACCTTGGATCGCCCAATCATTTAAAGATGAGATTTTGAATGAAGCGGACAAAAT
AAAGAAATGGCTTGATGAGAATGAAGCTAGACAGGCCAAAACTCCAGGATACATGGTTCCCATCTTCACATCTGATGAAGTATATGGAAAGGTTGAAAAGCTTCAAGACAAGGTGCTCAAGATCAGCAAAATACCTAAGCCAAAGCCAAAGGTTGAAATACCTCAAAAAAATGACTCTGTCAAGGCTGACAACGAAGATG
AGGTCACATCCACATCAAGCAACAGCACAGATAACGAGACTGCCGATGAAAAGATACATGATCCAAGTGGACCTGAAGGACACTCACAGGGATCAAATGGTGAACAAGATGCCAACGAGGAACCTAATGATGAACTATGAGAGGAGTAAAATGATAGAAATCAAGAATTTAAAAAATATGGAAGACCTACATACAATTAG
GGTGCAGAAATTGTTAGTGAATGTACAGAAAGTGTTTGGCAGGGCTAATGTCACCATCGATTTTGATCAACATCAATTTTTCCTGTCTTACATTCCGGCAATAGGCAGGGGATGCATCTCTTATGTAACCCACAAATGGTGTCTTTTGTAAACGTAGGATGGTGGAAAGCTATGTCGCTAATACTTACCAAACGTTTATA
ACATTCCTGGTTATATTTTTAGGAAAAAAATCCCCCCCATGCATATCAAAAAACAGTTCGATATGCATCATTGAAATCTTATTTTCATTTTATCAATAGCGATCAGTATTTCTTTTTGCCAAAAAAACAGAGCACATATAGCGATCAGTATTTTATCATTGAAGTTTATTATCAGCGAATGAATTATAATAGCCTTTCCT
TCAGTTTTCATTTAAGAACAACGCATTTTTACTTCTGCAATAAATCATAATTGGGTATTTGTTTTCCAACTTCATTGATGTAGAATAATACTTTCTGTTTTATTTATCACATTAGTTTCATTATTTCTATTTAAATATTTAAAGTCATGTTGAGGACTTTGGCAAAGCCCGATCAAATGGACGAGAGGTGATCTATTGAA
CATTCTTGATTTGCATTCCTTGTAGATGCGCGGCTCTCATGTTTAAGAGTAG
Intron 3 GTAAGAATCG ... TGTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55 | 63 | 77 | 4 |
| A2 | 50.62 | 40 | 41 | 0 |
| A3 | 50.39 | 63 | 64 | 3 |
| A4 | 51.96 | 49 | 53 | 8 |
| A5 | 56.25 | 21 | 27 | 2 |
| A6 | 53.48 | 107 | 123 | 0 |
| A7 | 51.26 | 135 | 142 | 2 |
| A8 | 51.52 | 128 | 136 | 0 |
| A9 | 51.25 | 136 | 143 | 1 |
| A10 | 51.52 | 112 | 119 | 1 |
>TRINITY_DN101986_c0_g1_i11 from sample A4 / Example spliced isoformATTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTGTCAGTGCTTCTCCATACAATATTTCGAATACAATCACA
AGCGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCTCCATACCTGCTGAAAATTTCCCCTTTTG
CACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAG
AATGGAAGACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAGAATATGCGGAGTGGTTTTCTGATTGTTTAATGCCTTAAAACCAGAAGTATGGACACTGGCATGTATGCCAATTGCCTGCTATGCCACGAGCAAACAATGGTCAAGGCATGGCTTGAGGAAGGAA
AAGATGTCAGACTTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACATTCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCT
CTAGAGCAGAAACTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAGGTATTTGAAATGAACCTTTCTTTTGTTCTTATTTTAAAACTCTTATTGGCATAAATGTGGAGATGGTAGCTTTAATGAAGGAAGGTTATGAAAGGTACCTTTAGGACAACTAATGAATACAAGGTACAT
AGAGAATGTGAGGATTCCCTCACATGTAGAAAACAGGTGACCCTGTTGTTACGAGCATGAATGTACTGGCTTGGCAGTTCGAGTGATGCTTGACCACGGGTTGATAACTCACTGGGATGCTATTATTCAGACATGTAACACCTGGTTGGTTTCAGTTTATTTTGTATGTTTATTTCATAACCATTTTTGGGGTTTACTAT
TAGTACGCGTGAAAAGTGTTGCTAGAGAAAAGGTAGTGTCAAGCAATTGGACTAGAATAATTGGATATAGAACTTTTTACAGAACTGCCCAACTTTTCTTCTAAACTGGCAAGGCCCATAGAAGTTGGGTGTTCCATTCTCTTTTTTTGACCTGAGTTTATGCCTACTTGGTTGCGTCGATTTCAAACAAATTTATGCAC
CAGACATGTGTTTCAGGCCTATGCTGGTCTTCCTATTGGTTCATCCTTTTTTGTGCCACTGTCAGGTGTTTTCATTGCGTTTTTTCTGATCTCTTGTAGTTTAGGAAATATTTCCTCATTGTTGGTATTTGATTATCATCTGCATTGATCTGCATGTTCCCTCTACAACTCAATCTCTAAATTCTGCTCACATCTATTAT
CTTTGTCTCTTTAGACTGCATGGCCTTTTATGTTTTGCTCATGCCTTAACATAGTTACCG
>TRINITY_DN101986_c0_g1_i7 from sample A4 / Example unspliced isoform:ATTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTGTCAGTGCTTCTCCATACAATATTTCGAATACAATCACA
AGCGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTTTCTTCTCACCTCAAGATTGGCATTGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCT
CCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGCAGGGTTGGTACGAGGAGCACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCT
CACATTCGAGCCGTAGATGGAATTTTTCATGTTTGTAAACGTGACGCTCAAGCTTTGGACACAAATAGTAATTGTAAGGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAA
GACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAGgtaagaatcgtgaaaatactaatttttctgaatatgttttttatagaaaacacaaattggcaatgcttgaattttctgcttcatccataataaatataattttaactggatcacttattttatgatttagt
ccattgtagttacttcggatttcatttatgtgcatttctattgatagatggaatgcagtccctgtgatgttgtgaattttctttttgaagtcttgattctgctaatgttttgtcattaagaaataatcaatctacataaatgatgtgaaaccatattgaatgcaatttaatgtactttgattagtgtgtactaaacaaga
gaatggaaggagccttagttttttaattttttgtataataaatggtttttttgttgttgttcagAATATGCGGAGTGGTTTTCTGATTGTTTAATGCCTTAAAACCAGAAGTATGGACACTGGCATGTATGCCAATTGCCTGCTATGCCACGAGCAAACAATGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGAC
TTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACATTCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAA
CTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAG
Intron 4 GTAAGTTTAT ... GTTACATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 96.39 | 3 | 80 | 2 |
| A2 | 100 | 0 | 32 | 2 |
| A3 | 98.15 | 1 | 53 | 5 |
| A4 | 95 | 3 | 57 | 4 |
| A5 | 87.5 | 3 | 21 | 0 |
| A6 | 100 | 0 | 70 | 0 |
| A7 | 100 | 0 | 120 | 0 |
| A8 | 98.73 | 1 | 78 | 0 |
| A9 | 98.99 | 1 | 98 | 0 |
| A10 | 98.94 | 1 | 93 | 0 |
>TRINITY_DN118050_c0_g2_i2 from sample A1 / Example spliced isoformAGATGGAATTTTTCATGTTTGTATTTTAAGAACGTGACGCTCAAGCTTTGGACACAAATAGTAATTGTAAGGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGACCTTG
AAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAGAATATGCGGAGTGGTTTTCTGATTGTTTAATGCCTTAAAACCAGAAGTATGGACACTGG
>TRINITY_DN118050_c0_g2_i9 from sample A1 / Example unspliced isoform:GTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCTCCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGC
AGGGTTGGTACGAGGAGCACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCTCACATTCGAGCCGTAGATGGAATTTTTCATGTTTGTAgtaagtttattaaccttttcctttattaattacttgatttttaagaacatgctgctcaaatataggatgaaaacaataattgtaagctttgttcatcactgggcaata
gattgaagatttcatgtctgtagtaagtttattaactttttcttttgttacatgagTTTTAAGAACGTGACGCTCAAGCTTTGGACACAAATAGTAATTGTAAGGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCTCCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAAC
GAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGCAGGGTTGGTACGAGGAGCACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCTCACATTCGAGCCGTAGATGGAATTTTTCATGTTTGTAGTTAGTT
CATCACATATGAAATGACATAAGATCCCATTAGTAATTGTTATGTGGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGACCTTGAAAAGTCCATGAAGCGAAGCAATGA
TAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAG
Intron 5 GTGCTTCTCA ... ATTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.04 | 178 | 10 | 34 |
| A2 | 9.71 | 93 | 9 | 10 |
| A3 | 20.83 | 133 | 16 | 35 |
| A4 | 14.42 | 89 | 3 | 15 |
| A5 | 5 | 38 | 3 | 2 |
| A6 | 16.22 | 537 | 0 | 104 |
| A7 | 17 | 698 | 0 | 143 |
| A8 | 16.97 | 817 | 0 | 167 |
| A9 | 15.11 | 736 | 0 | 131 |
| A10 | 13.76 | 495 | 0 | 79 |
>TRINITY_DN116721_c6_g1_i7 from sample A3 / Example spliced isoformTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTGTCAGTGCTTCTCCATACAATATTTCGAATACAATCACAAG
CGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTTTCTTCTCACCTCAAGATTGGCATTGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCTCC
ATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGCAGGGTTGGTACGAGGAGCACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCTCA
CATTCGAGCCGTAGATGGAATTTTTCATGTTTGTAGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAA
AAGTCGAAATGGAGTGCTGCCATAAGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGACTTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACAT
TCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAACTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAGTGCTCTTTCTAAGATCGTAAAGACTGGTTTTTCTGCCATAAACCTCATATACTTTTTCACAGCAGGCCCAGATGAGGT
GAAATGCTGGCAAGTTAGAAAACAGATAAAAGCTCCTCAGGCTGCAGGGGCCATCCACACTGATTTTGAAAGGGGATTTATTTGTGCAGAGGTAATGAAGTTCGAGGATTTGAAGGAGTTGAATAATGAATCAGCTGTCAAGGCTGCGGGCAAGTACAGACAAGAGGGGAAAACGTATGTGGTCCAAGATGGTGACATCA
TTCTTTTTAAATTTAATGTCTCTGGCGGGAAGAAATGATTTATTGTAAGGTGTTTTTTGCAATCATTTAACGTCATTCTATGTGGGATAATACCAAGGACACAAATTGAGTTTTTATTAGATTGAATTAAGGCTCATGCTCAGCAAATGTGTATTGCCTACAGCCATTGACGTTGATTAGGATAGCATTAGCTGATGTTC
TGTCATATGGTCTGTTTTTTAAAATATAATGCTTTTGATGGTTCTCTGTTGTACAATAAAATATCGGTGCAGTTCAATGTCATTATACACAGGTGTAGTGTTTTAGTTTGAATGGGGTAGTTGGAGTTGGGTAAATTGCATGTCCACATTTTTGCCTCTCTGTATTAGAGTGATGAAAGTCACAATACAAATTAATTGGA
TCTTTTATCAATTTGCTTATCAAGGACCCTCTCCAGTTCTTGTTTATTTTTGTATTTCCATTTGAATGGTGTACAAAATGTCATTATGTATAGCTTTTGCAGATACTCAGCAGTTAGGTAGAAAAATGGTG
>TRINITY_DN116721_c6_g1_i2 from sample A3 / Example unspliced isoform:ATCTCATTGATACAAAGTGGTCTTTGTCATTAATAGTTATGTTCTACTTCTCCAAGGCGATTTTGGTTGTGGGGTCTATCCTTTAGGTGGGCTTATTTCTTTTTCTTATTGAGATTTTTGCCTTTTTTAATGTCTTTTTATGAAAAAATCATGGGAGATGTCGAGATTGCAGGAGATGTGGGGAGGCAGCAAGAGATGTT
GTTTGTCTTTAGGTAGATCTTCTCGCAACCCCAAAAACCTCTCTCAATAGTTGGGACATGTGCCTGTCATTCGGAGAGGTGTCTCCCTACTACTATGCCAAATATAAATAGGAGGTTGGAATAGAGATCTAGGTTACTTTGATTTCTATTTTAGAAAACCCTAAGTGGATGTTTGAGGCATGAATTGTTATCAGTGTTCC
AAGGCTTGATGATTGTAACAACTATCTTCTCTCAAAGATATATATGCCATCTTCTTAGTGCCTTTCCTCCTTGCACTTGGGTTTCCCTTTATTATTCCAATCCCTATTACATATATGGTCTACCTTTACCCTATTACATATGCATTAAACCTTACATATGCACCCCTTGGGGTATATCAGTTCCTGCCCTGGAAACACAT
AACACATGCTGTGGGACACATCCCTTGACAACACAAGATGGGTCCCATATATGGTTCCCAGCTTTTTATATGCATTTTGCTACTTTTGAGTTGTCAACATTGTTACTGTAGTGTTGGAAGCAATTTTGATAGTTAAATTTCTGGCAATTGCACTATTTTCTGTCACTCCAACACCATTTTGGCTTGTTTGTCCTAGTAAG
TACTGATAGTTGTCTACTAGCGAGTATATCAATCAATTATAAATCGAATCATGCCATCTAGGTACATCCAGTGATGATAAAAACACTTTCTTGGTGGTTAGGGATTTGGGGCTCTATGTCATTTCTTAAATTTTACAAAGGGATGTTATTGGGATATTGTAATTATCCATTGACACTAAATTTTTGGATAGGATGTCTAA
TCAATTAGTTAATTTTTCTAAATTTATTTGATGACTTGTAGGACTTCTACATCAAAAGTTATATTAAAATGTGAGAATGTCTGTTTGACATACACTGCATCTCTGAAGTTCAAGGTTATACAATATGAAGTGTTTCTGAACATGTTGCTATTCTTTTGTTGCAGTGCTCTTTCTAAGATCGTAAAGACTGGTTTTTCTGC
CATAAACCTCATATACTTTTTCACAGCAGGCCCAGATGAGgtgcttctcattttcccatttactgtgttctggtcatgtgcatatcaatataaaatttaaatagttaatagtttacaagagcagctaacccgtcagaaagagtaaagctgaaatttctatggagtatcacatgctgttgaagaatagagctaagtaatgg
tttagcataacagaaataggtattgtcattatttcactggcattcattactttggttcatatggtggctgtacttgcttatgtggcttctgtttatgaatattttgttaaaagccaaagtaaagagttcatgataagtagttatacttcataccatccataaataatattagtaaactgacgtgtgttaaaaaggttcat
aagattaagcatatggacaaattgcagaaggttttttccatccgagttaaacacatgaagaagttgcagaagacctcttatgtgtgagaatcatgtctgataaacatatgttcaaatgtattatgcatgggtatgcatatgtgccactgtaatctatgtaattattactgttagattgtcctagggacaagtttccaaaa
atgactggtatacaaagtaatggcaattgaatatcagtttaatttcctcatccatagaatttttttctgccataggttctgtgcaatgcctaaaggacatttcatatactgtgaaactgtgaaaatttggttagtggcaagatcaattgaaaaggaagtagtccaacatgctatgaaagttgatgtacaagaatgcagat
gacctgaaattttctcacattgttagtaatttaaagatctgtgatctggaaaaggaattaaggaaaagtctagttgttgtaagttgtatgtttagatgaatatcctttttgtagtgtgatctaccttaatatcctcaaattagaatagttaagatgataatatagttccaatttatcttaatgaaagaaaagggggaacc
agatcacagccaattccattaatgtccacaagaatagctcagtgcattctccttatgtccgctacattaccctcaaaagggcccaatattttctaccaacatatactacacgatgatccattccaacgtgtaactctgattatatattatttatatcatatatgatcataaagaagctatgctcagttccagatctagaa
gcttatgggcgagatttagagctatcaagtccaatgtgctggcaagccaagcatcctgagcagtggggtgtgctagaaagtctgatgcattactcaaaacattgcaaaatggggtcccaacatgccctgacctctaatttttcctcaacacgagaaaatcgggctcactactgcaaaataaatgcgaaagatggaagatc
ctttatgtactagtgaatttgttcaaagctctgattaacttccgtgtagacatatcaattttctatacatccgcctgaaatttcttaatgttgtccaaagtagatgtatgtgtgactagtgtatcattcagtgatgccttcaccggctcttctgctaactgttgtatattgctaaagttggtatattacttctgttcctg
aagcttcattgttgttttttaatctgttcttgcataaaggttttgatctctttggagtttcctttcttgtggatcctgatgaagcctactgtcagtatggcactttatatcttgtttgaagtttgcaaattatagttcataaagcattacactaagctataatatttttacagGTGAAATGCTGGCAAGTTAGAAAACAG
ATAAAAGCTCCTCAGGCTGCAGGGGCCATCCACACTGATTTTGAAAGGGGATTTATTTGTGCAGAGGTAATGAAGTTCGAGGATTTGAAGGAGTTGAATAATGAATCAGCTGTCAAGGTACTGCTCAGCTTCTCTTTTCATTTTTCTCTATTTTCATTGTTTCTCTTCTCTGCAGTCTCTCACTTTCATAAGAAGTGAGG
ACTGTTGGTCCATCCTTCATTTTCTTGAGATTTAATTTTCTAATTCTTGAGATATTTTTTGGAAGGTTATGTTTGGAGTCTGGAGATTCAGTTGCCTTGAAATCTGGATCCAACTTAGGATCATGACAGATTGCAAGCAAAGAACCTAGATTAATGGACTCATTGCATAGCCCTAAGATGTGACAAATGCTTTGAGTTTT
AATGCAAGATAGAGGTCTTTAAACATATATATGATACTACTTGTAGTAAATTTTTTATTAATGTCCATAGATGACCATTTATTAAATAGCAAATGCAAGTAGTGGAATATTATCATGTACGGTACCTACTATGATCAATGAGGGAGTGCCTACTCTGTGTCGTAAGCTAAAACATTAATATAAAGAAGTATAAAATGATA
CTGCAGTATGCTACTGATAAAATGGAAAAATGTGTACATGGTTGTGGCATACACGCAAAAACAATGGGATTGGATGCTAAACAGGGCCTTTACTAGAGATGAAACCCTCTGTGATGTTAGTTGCAAATAGAATGTTGATACGTATTGTCACGAAACACTGTCTCTAGGCATCTTGGTTGAAAGTAGACGGCCTATCATAT
TTACCTTATCCAATTGTGGAGTCACCCTGGGTGGAGTGTGTTAAATTTTGGTTAGGGTTAGGGTTTGATGCAGAAAAATAGAAATCAATGTACTTTAATGCAAAATTACATTTAATAAACTAGTAATGAAACGAAATAGTACAGCAGTAACATA
Intron 6 GTAAGATTTT ... TGGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.08 | 123 | 11 | 29 |
| A2 | 13.57 | 121 | 12 | 19 |
| A3 | 15.5 | 169 | 22 | 31 |
| A4 | 18.42 | 155 | 14.5 | 35 |
| A5 | 18.58 | 92 | 15.5 | 21 |
| A6 | 15.97 | 242 | 31 | 46 |
| A7 | 16.1 | 396 | 38.5 | 76 |
| A8 | 16.25 | 237 | 22 | 46 |
| A9 | 12.79 | 375 | 41 | 55 |
| A10 | 14.92 | 382 | 35.5 | 67 |
>TRINITY_DN101986_c0_g1_i2 from sample A4 / Example spliced isoformATTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTGTCAGTGCTTCTCCATACAATATTTCGAATACAATCACA
AGCGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTTTCTTCTCACCTCAAGATTGGCATTGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCT
CCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGCAGGGTTGGTACGAGGAGCACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCT
CACATTCGAGCCGTAGATGGAATTTTTCATGTTTGTAGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTT
AAAAGTCGAAATGGAGTGCTGCCATAAGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGACTTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATAC
ATTCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAACTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAGGTATTTGAAATGAACCTTTCTTTTGTTCTTATTTTAAAACTCTTATTGGCATAAATGTGGAGATGGTAGCTTTAAT
GAAGGAAGGTTATGAAAGGTACCTTTAGGACAACTAATGAATACAAGGTACATAGAGAATGTGAGGATTCCCTCACATGTAGAAAACAGGTGACCCTGTTGTTACGAGCATGAATGTACTGGCTTGGCAGTTCGAGTGATGCTTGACCACGGGTTGATAACTCACTGGGATGCTATTATTCAGACATGTAACACCTGGTT
GGTTTCAGTTTATTTTGTATGTTTATTTCATAACCATTTTTGGGGTTTACTATTAGTACGCGTGAAAAGTGTTGCTAGAGAAAAGGTAGTGTCAAGCAATTGGACTAGAATAATTGGATATAGAACTTTTTACAGAACTGCCCAACTTTTCTTCTAAACTGGCAAGGCCCATAGAAGTTGGGTGTTCCATTCTCTTTTTT
TGACCTGAGTTTATGCCTACTTGGTTGCGTCGATTTCAAACAAATTTATGCACCAGACATGTGTTTCAGGCCTATGCTGGTCTTCCTATTGGTTCATCCTTTTTTGTGCCACTGTCAGGTGTTTTCATTGCGTTTTTTCTGATCTCTTGTAGTTTAGGAAATATTTCCTCATTGTTGGTATTTGATTATCATCTGCATTG
ATCTGCATGTTCCCTCTACAACTCAATCTCTAAATTCTGCTCACATCTATTATCTTTGTCTCTTTAGACTGCATGGCCTTTTATGTTTTGCTCATGCCTTAACATAGTTACCG
>TRINITY_DN101986_c0_g1_i13 from sample A4 / Example unspliced isoform:TCAAGATTGGCATTgtaagattttcagttttaatcgtagagaacgatcaatcttgatattcagtcatttatttgttttttgcaatgcatttttttatcaagcaaattggcgatggttggcagGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCTCCATACCTGCTGAAAATTTCCCC
TTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGTTTCTGCATTTTTGGAAGTGCATGATATTGCAGGGTTGGTACGAGGAGCACATCAAGGACAAGGGCTTGGGAATAATTTTCTTTCTCACATTCGAGCCGTAGATGGAAT
TTTTCATGTTTGTAGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCC
ATAAGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGACTTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACATTCTTGGGTTCAGGGGCATGGA
GGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAACTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAGTGCTCTTTCTAAGATCGTAAAGACTGGTTTTTCTGCCATAAACCTCATATACTTTTTCACAGCAGGCCCAGATGAGGTGAAATGCTGGCAAGTTAGAAA
ACAGATAAAAGCTCCTCAGGCTGCAGGGGCCATCCACACTGATTTTGAAAGGGGATTTATTTGTGCAGAGGTAATTTTACAGCATTTGTTTGTGTCTATGCTGGTATCACCTCATCATGATTA
Intron 7 GTTTCTGCAT ... TAATTGTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.62 | 121 | 151 | 78 |
| A2 | 44.72 | 102 | 102 | 63 |
| A3 | 52.31 | 93 | 137 | 67 |
| A4 | 51.49 | 98 | 142 | 66 |
| A5 | 52.41 | 39.5 | 53 | 34 |
| A6 | 47.75 | 174 | 199 | 119 |
| A7 | 51.76 | 226 | 308 | 177 |
| A8 | 48.31 | 191 | 225 | 132 |
| A9 | 49.54 | 247 | 307 | 178 |
| A10 | 49.88 | 205.5 | 252 | 157 |
>TRINITY_DN101986_c0_g1_i8 from sample A4 / Example spliced isoformATTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTGTCAGTGCTTCTCCATACAATATTTCGAATACAATCACA
AGCGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTTTCTTCTCACCTCAAGATTGGCATTGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCT
CCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTT
TAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAAGACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGACTTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCA
AAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACATTCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAACTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAG
TGCTCTTTCTAAGATCGTAAAGACTGGTTTTTCTGCCATAAACCTCATATACTTTTTCACAGCAGGCCCAGATGAGGTGAAATGCTGGCAAGTTAGAAAACAGATAAAAGCTCCTCAGGCTGCAGGGGCCATCCACACTGATTTTGAAAGGGGATTTATTTGTGCAGAGGTAATTTTACAGCATTTGTTTGTGTCTATGC
TGGTATCACCTCATCATGATTA
>TRINITY_DN101986_c0_g1_i7 from sample A4 / Example unspliced isoform:ATTCTTTGCCCACCCGAATCACAAAACACATTAAAACAGCGTATAGGCAACGCCATGGTCACCAGTAGACAAAACTGCTAGAACAGCGTATAGCCAACGCCACGGTCGCTAGTAGCCAAAACTAGGGTTTATAAGCAAATATTTCCTATAAGGGTTTTGCTGTCAGTGCTTCTCCATACAATATTTCGAATACAATCACA
AGCGGACTGCAATCCGCCACTAAAGTATCTGTGAGGAAAGTTTACCCCTGCGCTCTGCAAAATGCCTCCAAAATCATCCAAGAAGGAAGCCCCGGTCGAGCGTGCCATTTTGGGCCGGTTTTCTTCTCACCTCAAGATTGGCATTGTTGGACTGCCGAATGTAGGGAAGTCGACACTCTTCAATACTTTAACTAAGCTCT
CCATACCTGCTGAAAATTTCCCCTTTTGCACGATTGAGCCCAACGAAGCCCGAGTGAATGTTCCAGATGAGCGTTTTGACTGGCTCTGTAATCTGTATAAGCCCAAGAGTGAGgtttctgcatttttggaagtgcatgatattgcagggttggtacgaggagcacatcaaggacaagggcttgggaataattttctttct
cacattcgagccgtagatggaatttttcatgtttgtaaacgtgacgctcaagctttggacacaaatagtaattgtaagGAGCATTTGATGATCCGGATGTTATTCACATAGAGGATGTTGTGGACCCTGTTAGGGATTTAGAGGTGATAACTGAAGAACTACGTTTAAAGGATCTCGAGTTTATGGAAAGGAGAATGGAA
GACCTTGAAAAGTCCATGAAGCGAAGCAATGATAAGCTGTTAAAAGTCGAAATGGAGTGCTGCCATAAGGTAAGAATCGTGAAAATACTAATTTTTCTGAATATGTTTTTTATAGAAAACACAAATTGGCAATGCTTGAATTTTCTGCTTCATCCATAATAAATATAATTTTAACTGGATCACTTATTTTATGATTTAGT
CCATTGTAGTTACTTCGGATTTCATTTATGTGCATTTCTATTGATAGATGGAATGCAGTCCCTGTGATGTTGTGAATTTTCTTTTTGAAGTCTTGATTCTGCTAATGTTTTGTCATTAAGAAATAATCAATCTACATAAATGATGTGAAACCATATTGAATGCAATTTAATGTACTTTGATTAGTGTGTACTAAACAAGA
GAATGGAAGGAGCCTTAGTTTTTTAATTTTTTGTATAATAAATGGTTTTTTTGTTGTTGTTCAGAATATGCGGAGTGGTTTTCTGATTGTTTAATGCCTTAAAACCAGAAGTATGGACACTGGCATGTATGCCAATTGCCTGCTATGCCACGAGCAAACAATGGTCAAGGCATGGCTTGAGGAAGGAAAAGATGTCAGAC
TTGGTGATTGGAAAGCTGCCGAGGTTGAGATACTAAATACATTTCAGCTGCTGAGTGCAAAACCTGTTGTTTACTTGGTGAACATGACAGAAAAGGACTATCAAAGAAAGAAGAATAAATATCTTCCAAAAATACATTCTTGGGTTCAGGGGCATGGAGGTGAACTCATTATTCCCTTCAGTGGTGCTCTAGAGCAGAAA
CTTGCTGATATGCCTCCCGATGAAGCTGCGAAGTATTGTGAGGAAAATAAGATTCAAAG