sp|Q9LPI5|CID11_ARATH ----> Polyadenylate-binding protein-interacting protein 11
Intron 1 GTGGCTTCAA ... TTGGTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.12 | 41 | 17.9 | 16.1 |
| A2 | 44.13 | 23 | 12.6 | 18.2 |
| A3 | 43.8 | 9.8 | 5.5 | 7.7 |
| A4 | 31.84 | 22 | 9.1 | 10.4 |
| A5 | 69.59 | 5 | 2.9 | 11.5 |
| A6 | 87.36 | 19 | 6.4 | 136.4 |
| A7 | 76 | 23 | 12.3 | 75.7 |
| A8 | 74.31 | 16.7 | 15.5 | 50 |
| A9 | 71.5 | 32 | 10.8 | 81.7 |
| A10 | 64.75 | 28.7 | 14.7 | 53.4 |
>TRINITY_DN129277_c1_g1_i9 from sample A1 / Example spliced isoformCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAA
GATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTG
CAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTA
AAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAG
ATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGAT
TTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACCACGGGTTCATCTATTGAAATACACG
>TRINITY_DN129277_c1_g1_i5 from sample A1 / Example unspliced isoform:CACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGgtggcttcaatgcttcctctggtgttaattgtttgtctttttttgtaatctacagcttctttctcttctttgatatgcttatctcctccttggatattgtaatggatacgtattcctaaagctggaacatcttttggttgaagGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTG
CTTTTGTAGAATTTACTGATGAGGGTAAGTATTCTTCTGTGACAACTGATAAACAGAAGCAGCAGTTTTTCCTAGTATAATTTTGAATTTAGAGATTGCCTTTTCCAATGTCATCTGTGTCTGCAGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAA
ACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGGTGGGTAATGTAATGTCTACATATGATCTCTACCCAGAAGATGTTACTTTGTCATAGGAAAGCGTTATAAATAGGTGTAGTATTAGTTTTTAAATTTCAGTTAGTCGCCTTATGCACACCTTTATTAAAACAAAATTTCAATTAGATAGTTTAAATGGTTT
GATATCAAACAATGCAGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTAAGTCTAAATCCTTTGAGTTTTAGTTATTGCTTGTCTGGCATACCGAATTTATGGTATGGTGTGCTATCATTGCATTGCATGTTTTTTCTTAATCCAAGTTTACACTGCTGTTTTATTGA
AGTATGGATTGAAATGTTTTGTATTTGAATGTGGATTAAGCCACAGTGGTAGCTGAAAGCTTTATTCTATGCTGTGGTGAATGGTCTTGCAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAG
TTTGTTATGGTAAGTGGCTTCTAGACCAATATGTAGAAT
Intron 2 GTAAACAACA ... CAATAGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.55 | 51 | 33 | 31 |
| A2 | 35.8 | 26 | 14 | 15 |
| A3 | 32.99 | 29.8 | 19 | 10.3 |
| A4 | 37.66 | 24 | 15 | 14 |
| A5 | 25.83 | 20.1 | 10 | 4 |
| A6 | 29.11 | 28 | 19 | 4 |
| A7 | 33.94 | 36 | 20 | 17 |
| A8 | 45.45 | 21 | 22 | 13 |
| A9 | 34.28 | 36.1 | 25 | 12.7 |
| A10 | 51.97 | 31.9 | 35 | 34 |
>TRINITY_DN122611_c0_g2_i15 from sample A2 / Example spliced isoformGCCCCTGGAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGAACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTT
CATCTGAGTGTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTGGTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGG
TACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCAGAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGAT
TCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTCATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAAAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAA
ATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAACATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTC
TCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTATGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGAC
TGAAGAGCAGCTTGCAGCTTTGTTTATCAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCC
CTGTAAATCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTGGGTACTCAGTGTGTTTCATTCATGTAATCTTTCTGTTAGCAAATACTTGCATTAACACTTTTC
ATTATTTATTCAGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGTAAGTGGCTTCTAGACCAATATGTAGAATGTACTTTTGTCATCTTGTTCTTTTTTTGTCAGTTCGTTATTTTTTCCTGGTGCCAAAATGGTTTCATATTTTTATATTGATTTAACTG
GGGGAAGTTTTCAAGTCTCAACAGTTAGGGACTTACCATGGGCCATTTCTTTAACTTGTTAAAACTGTTAAAATTCTTCAGCACATGGTAACAGTCCTAATCTGATTTATTATAACCTACCT
>TRINITY_DN122611_c0_g2_i16 from sample A2 / Example unspliced isoform:GCCCCTGGAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGAACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTT
CATCTGAGTGTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTGGTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGG
TACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCAGAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGAT
TCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTCATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAAAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAA
ATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAACATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTC
TCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTATGgtaaacaacaataacaacaccgataactacaataataataacaatagacagAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTATCCCAGCAAGA
AGATAGCATTAGAAGAACAGTCTACGTTTCAGACGTTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATTGTGGGGAGGTGGCTTCAATGCTTCCTCTGGTGTTAATTGTTTGTCTTTTTGTGTAATCTACAGCTTTTTTCTCTTCTTTGATATGCTTATCTCCTCCTTGGATATTGTAATGGATAC
GTATTCCTAAATTTGGAACATCTTTTGGTTGAAAGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTTCTTTTGTAGAATTTGTTGATGAGGGTAAGTATTCTTCTGTGACAACTGATAAACAGAAGCAGCAGTTTTTCCTAGTATAATTTTGAATTTAGAGATTGCCTTTTCCAATGTCATCTG
TGTCTGCAGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTG
AAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCC
CCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTAAAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTA
GGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAGATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTT
AGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCT
GTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACCACGGGTTCATCTATTGAAA
Intron 3 GTAATTTTAC ... CTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.99 | 44 | 60.9 | 17 |
| A2 | 61.59 | 26 | 47.1 | 36 |
| A3 | 50.35 | 37.4 | 52.8 | 23 |
| A4 | 45.86 | 30.6 | 43.9 | 8 |
| A5 | 63 | 11.5 | 24 | 15 |
| A6 | 44.15 | 17 | 20.9 | 6 |
| A7 | 49.48 | 34 | 41.4 | 25 |
| A8 | 54.29 | 11.8 | 16.9 | 11 |
| A9 | 51.67 | 31.3 | 42 | 24.7 |
| A10 | 40.09 | 48.4 | 53.8 | 11 |
>TRINITY_DN129277_c1_g1_i1 from sample A1 / Example spliced isoformCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTGGTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCA
GTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCAGAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTC
AAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTCATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAA
GGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAACATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATT
GGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTATGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTG
ATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAA
ACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTT
TGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTG
TAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTAAAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAA
ACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAGATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCA
ATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGC
AATTCATTTCAGTTCACCACGGGTTCATCTATTGAAATACACG
>TRINITY_DN129277_c1_g1_i5 from sample A1 / Example unspliced isoform:CACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTgtaattttacagacagatggagactattttcttttggatcgcgtacctgtgcgttgagttacaggtaacgttcatctgagtttttttttttctcttttcagAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTGGCTTCAATGCTTCCTCTGGTGTTAATTGTTTGTCTTTTTTTGTAATCTACAGCTTCTTTCTCTTCTTTGATATGCTTATCTCCTCCTTGGATATTGTAATGGATACGTATTCCTAAAGCTGGAACATCTTTTGGTTGAAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTG
CTTTTGTAGAATTTACTGATGAGGGTAAGTATTCTTCTGTGACAACTGATAAACAGAAGCAGCAGTTTTTCCTAGTATAATTTTGAATTTAGAGATTGCCTTTTCCAATGTCATCTGTGTCTGCAGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAA
ACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGGTGGGTAATGTAATGTCTACATATGATCTCTACCCAGAAGATGTTACTTTGTCATAGGAAAGCGTTATAAATAGGTGTAGTATTAGTTTTTAAATTTCAGTTAGTCGCCTTATGCACACCTTTATTAAAACAAAATTTCAATTAGATAGTTTAAATGGTTT
GATATCAAACAATGCAGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTAAGTCTAAATCCTTTGAGTTTTAGTTATTGCTTGTCTGGCATACCGAATTTATGGTATGGTGTGCTATCATTGCATTGCATGTTTTTTCTTAATCCAAGTTTACACTGCTGTTTTATTGA
AGTATGGATTGAAATGTTTTGTATTTGAATGTGGATTAAGCCACAGTGGTAGCTGAAAGCTTTATTCTATGCTGTGGTGAATGGTCTTGCAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAG
TTTGTTATGGTAAGTGGCTTCTAGACCAATATGTAGAAT
Intron 4 GTGGGTAATG ... AACAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.01 | 15.9 | 12 | 5.3 |
| A2 | 39.35 | 11.9 | 7.8 | 1 |
| A3 | 20.34 | 16 | 4.9 | 10.5 |
| A4 | 30.98 | 17 | 8 | 0.8 |
| A5 | 7.68 | 12.9 | 1.1 | 2.8 |
| A6 | 10.14 | 26.8 | 3.8 | 0.5 |
| A7 | 12.54 | 30.9 | 4.8 | 0 |
| A8 | 8.82 | 12.9 | 1.5 | 2 |
| A9 | 32.86 | 13 | 6.4 | 1 |
| A10 | 5.17 | 24.6 | 1.5 | 0 |
>TRINITY_DN129277_c1_g1_i9 from sample A1 / Example spliced isoformCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAA
GATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTG
CAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTA
AAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAG
ATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGAT
TTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACCACGGGTTCATCTATTGAAATACACG
>TRINITY_DN129277_c1_g1_i5 from sample A1 / Example unspliced isoform:CACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTGGCTTCAATGCTTCCTCTGGTGTTAATTGTTTGTCTTTTTTTGTAATCTACAGCTTCTTTCTCTTCTTTGATATGCTTATCTCCTCCTTGGATATTGTAATGGATACGTATTCCTAAAGCTGGAACATCTTTTGGTTGAAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTG
CTTTTGTAGAATTTACTGATGAGGGTAAGTATTCTTCTGTGACAACTGATAAACAGAAGCAGCAGTTTTTCCTAGTATAATTTTGAATTTAGAGATTGCCTTTTCCAATGTCATCTGTGTCTGCAGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAA
ACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGgtgggtaatgtaatgtctacatatgatctctacccagaagatgttactttgtcataggaaagcgttataaataggtgtagtattagtttttaaatttcagttagtcgccttatgcacacctttattaaaacaaaatttcaattagatagtttaaatggttt
gatatcaaacaatgcagTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTAAGTCTAAATCCTTTGAGTTTTAGTTATTGCTTGTCTGGCATACCGAATTTATGGTATGGTGTGCTATCATTGCATTGCATGTTTTTTCTTAATCCAAGTTTACACTGCTGTTTTATTGA
AGTATGGATTGAAATGTTTTGTATTTGAATGTGGATTAAGCCACAGTGGTAGCTGAAAGCTTTATTCTATGCTGTGGTGAATGGTCTTGCAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAG
TTTGTTATGGTAAGTGGCTTCTAGACCAATATGTAGAAT
Intron 5 GTGAGTGGAG ... CTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80 | 18 | 72 | 7 |
| A2 | 74.63 | 17 | 50 | 20 |
| A3 | 80.43 | 18 | 74 | 15 |
| A4 | 77.22 | 18 | 61 | 5 |
| A5 | 80 | 6 | 24 | 9 |
| A6 | 86.67 | 4 | 26 | 4 |
| A7 | 82.26 | 11 | 51 | 15 |
| A8 | 92.86 | 1 | 13 | 7 |
| A9 | 78.69 | 13 | 48 | 18 |
| A10 | 82.35 | 15 | 70 | 6 |
>TRINITY_DN119975_c0_g3_i6 from sample A3 / Example spliced isoformGCCCGTATGCTGCAGGGGAATCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAAAAAGGGCCCGCGGCCCCCTGTAAAAAAAACAAAAAGCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACA
CAAATTCACAATTTCGTACCAGATGAACAGCCACGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTGGTGGTAGAAAATGAAGTCTTTAGTGAGACGGCTGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTG
ACGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCGGCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCAGAATCAGCAAAATCAGTTAAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCT
GGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTCATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAAAATGTGCAACTTTTACATATACAACAAGGTGCCA
TGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAACATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGAT
CTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTATG
>TRINITY_DN119975_c0_g3_i11 from sample A3 / Example unspliced isoform:GCCCGTATGCTGCAGGGGAATCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAAAAAGGGCCCGCGGCCCCCTGTAAAAAAAACAAAAAGCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACA
CAAATTCACAATTTCGTACCAGATGAACAGCCACGgtgagtggaggcgctgttaaatgctgattctttgtaattttacagacagatggagactattttcttttggatcgcgtacctgtgcgttgagttacaggtaacgttcatctgagtttttttttttctcttttcagAGTCGAAATCGGAAAACGCTACGAGACGTGC
TTAGGGCTTTGTTGATCATGGCCGTGGTGGT
Intron 6 GTATTCCGAA ... TTGTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.19 | 53 | 0 | 16 |
| A2 | 21.95 | 32 | 2 | 9 |
| A3 | 6.25 | 15 | 0 | 1 |
| A4 | 42.19 | 37 | 4 | 27 |
| A5 | 35.48 | 20 | 1 | 11 |
| A6 | 33.78 | 49 | 0 | 25 |
| A7 | 22.67 | 58 | 0 | 17 |
| A8 | 17.07 | 34 | 1 | 7 |
| A9 | 24.07 | 41 | 0 | 13 |
| A10 | 25.71 | 52 | 0 | 18 |
>TRINITY_DN103942_c0_g2_i13 from sample A4 / Example spliced isoformCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTGTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTT
TTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAG
GTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACC
AGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTAAAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATG
AAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAGATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTG
ACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTG
ACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACC
>TRINITY_DN103942_c0_g2_i3 from sample A4 / Example unspliced isoform:CAAGTAGTCGTCATACTTTTCATTTGAGATTAAAGTGAGTTTTCAAAATGGTTTTCTGATTTGGCAGGCTGACAGTGCTATTGCTGCCTTAAATTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGgtattccgaaatagactggaaataactttacgttccatgttatgctcttgttttgtttgatggaatcttga
aattatgccattttgttgtgtttagGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTAAAGTGGAT
GTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAGATGAAATC
CTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCC
TGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACC
Intron 7 GTTAAGTCTA ... GGTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.15 | 10.9 | 3.5 | 7.9 |
| A2 | 32.22 | 17.7 | 1.5 | 6.8 |
| A3 | 32.23 | 7.1 | 2 | 3.2 |
| A4 | 8.55 | 12.4 | 1.5 | 1.5 |
| A5 | 31.1 | 16 | 2.4 | 5.9 |
| A6 | 4.52 | 26.7 | 0.8 | 1.5 |
| A7 | 6.84 | 32.7 | 0.8 | 3.1 |
| A8 | 10.26 | 19 | 0.3 | 3.1 |
| A9 | 11.13 | 23.5 | 0.3 | 4.2 |
| A10 | 9.62 | 26.3 | 1.1 | 3.8 |
>TRINITY_DN129277_c1_g1_i9 from sample A1 / Example spliced isoformCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAA
GATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTG
CAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTA
AAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAG
ATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGAT
TTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACCACGGGTTCATCTATTGAAATACACG
>TRINITY_DN129277_c1_g1_i11 from sample A1 / Example unspliced isoform:CACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGGTGGGT
AATGTAATGTCTACATATGATCTCTACCCAGAAGATGTTACTTTGTCATAGGAAAGCGTTATAAATAGGTGTAGTATTAGTTTTTAAATTTCAGTTAGTCGCCTTATGCACACCTTTATTAAAACAAAATTTCAATTAGATAGTTTAAATGGTTTGATATCAAACAATGCAGTCAGAAGATGAGCGTGAAATGTGTGCAC
GGACAATCTATTGTACAAATATTGACAAGAAGgttaagtctaaatcctttgagttttagttattgcttgtctggcataccgaatttatggtatggtgtgctatcattgcattgcatgttttttcttaatccaagtttacactgctgttttattgaagtatggattgaaatgttttgtatttgaatgtggattaagccaca
gtggtagctgaaagctttattctatgctgtggtgaatggtcttgcagGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTGGGTACTCAGTGTGTTTCATTCATGTAATCTTTCTGTTAGCAAATACTTGCATTAACACTTTTCATTATTTATTCAGGTTTCTTGTTTGTGAC
Intron 8 GTGGGTACTC ... ATTTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.45 | 16 | 9 | 8 |
| A2 | 29.15 | 20 | 10.5 | 6 |
| A3 | 18.52 | 11 | 1.5 | 3.5 |
| A4 | 16.04 | 13 | 3 | 2 |
| A5 | 41.56 | 13 | 9.5 | 9 |
| A6 | 8.93 | 27 | 4.5 | 1 |
| A7 | 7.89 | 32 | 6 | 0 |
| A8 | 2.63 | 27 | 1.5 | 0 |
| A9 | 4.38 | 26 | 2.5 | 0 |
| A10 | 2.17 | 22 | 1 | 0 |
>TRINITY_DN122611_c0_g2_i1 from sample A2 / Example spliced isoformGCCCCTGGAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGAACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTT
CATCTGAGTGTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTGGTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGG
TACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCAGAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGAT
TCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTCATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAAAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAA
ATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAACATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTC
TCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTATGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTATCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACGTTGATCAACAGGTGAC
TGAAGAGCAGCTTGCAGCTTTGTTTATCAATTGTGGGGAGGTGGCTTCAATGCTTCCTCTGGTGTTAATTGTTTGTCTTTTTGTGTAATCTACAGCTTTTTTCTCTTCTTTGATATGCTTATCTCCTCCTTGGATATTGTAATGGATACGTATTCCTAAATTTGGAACATCTTTTGGTTGAAAGTTGTTGATTGTCGTGT
GTGTGGTGATCCAAATTCAGTTCTCCGTTTTTCTTTTGTAGAATTTGTTGATGAGGGTAAGTATTCTTCTGTGACAACTGATAAACAGAAGCAGCAGTTTTTCCTAGTATAATTTTGAATTTAGAGATTGCCTTTTCCAATGTCATCTGTGTCTGCAGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGG
GATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTA
GGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTGCAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTC
TAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTAAAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATAT
TTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAGATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATT
GGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGATTTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCT
GGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACCACGGGTTCATCTATTGAAA
>TRINITY_DN122611_c0_g2_i15 from sample A2 / Example unspliced isoform:GCCCCTGGAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGAACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTT
CATCTGAGTGTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTGGTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGG
TACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCAGAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGAT
TCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTCATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAAAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAA
ATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAACATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTC
TCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTATGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGAC
TGAAGAGCAGCTTGCAGCTTTGTTTATCAATTGTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCC
CTGTAAATCCAACATTTCTTCCGAGGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGgtgggtactcagtgtgtttcattcatgtaatctttctgttagcaaatacttgcattaacacttttc
attatttattcagGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGTAAGTGGCTTCTAGACCAATATGTAGAATGTACTTTTGTCATCTTGTTCTTTTTTTGTCAGTTCGTTATTTTTTCCTGGTGCCAAAATGGTTTCATATTTTTATATTGATTTAACTG
GGGGAAGTTTTCAAGTCTCAACAGTTAGGGACTTACCATGGGCCATTTCTTTAACTTGTTAAAACTGTTAAAATTCTTCAGCACATGGTAACAGTCCTAATCTGATTTATTATAACCTACCT
Intron 9 GTAAGTATTC ... GTGTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.56 | 44.9 | 7 | 9.5 |
| A2 | 16.37 | 30.7 | 6 | 7 |
| A3 | 31.54 | 36.9 | 17 | 13.1 |
| A4 | 15.01 | 45.4 | 8 | 11.9 |
| A5 | 41.52 | 14.1 | 10 | 4.3 |
| A6 | 79.09 | 31.3 | 116 | 5.7 |
| A7 | 54.71 | 52.3 | 63 | 5.2 |
| A8 | 60.44 | 23.3 | 35.5 | 2.5 |
| A9 | 59.52 | 43.5 | 64 | 1.6 |
| A10 | 52.53 | 40.7 | 45 | 2.5 |
>TRINITY_DN129277_c1_g1_i9 from sample A1 / Example spliced isoformCACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACTAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTGCTTTTGTAGAATTTACTGATGAGGAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAAACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGTCAGAA
GATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAGTTTGTTATGGCTGACAGTGCTATTGCTGCCTTAAATTG
CAGTGGTGCTATTTTGGGATCTCTACCCATAAGGGTAAGTCCATCAAAGACACCAGTGAGACCTCGCAATCCCCGTTCACTAATGCATTGAACGTGGCTACCTGAATCCTAACTTATACTTTCTAACAACTATCCCATGAAAAGCAGCATTTTTGTAGTCACATGGTGCATGAGAGAGTAAAACCTAGGTTTTGGTTTTA
AAGTGGATGTCGCTCAGGATGGCAGCATCATTTGATTATTGTACAATAAACATGAAAGTATCTATGGGGTTAGGCGATACAGTTCCTTTCAGTAACTCCTGGCATAATCTACGTGCATAATATTTATCTGCGTACACCAAACAGATTTCTTTGAAACTTTGAGTGTGTTAGCTGCTTAGAAAGTAGCACGGCTGTTGCAG
ATGAAATCCTTGATTTGTCAACGAACAGTGGGTATTTCTTTTGGTAGGAATTTGACTTGCTGTGTCATTTTTAGAAAGCAAGGATGGCATCATTTTGTTCTAGTAGATTTGGCTGTAAAAATTGGTTCTCATCCACATGTGATTTCAATACAGCAATTGCTACATTTGAGTTCTGTTAAGTGAACTTCATAATAATGGAT
TTCCATCCTGTAAGCCCTAAGGCCTTTCTATTGATCCAATAATTAACTAGTCTGACGATGACTTGACAATCTGTCATGTTTAGGAAGCTTTCAAAGGCTTGTTTATCTGAAGCTTTATTTTCTGGAAAAATTGAAACTTGACTCTGTATCTTTGCAATTCATTTCAGTTCACCACGGGTTCATCTATTGAAATACACG
>TRINITY_DN129277_c1_g1_i5 from sample A1 / Example unspliced isoform:CACGTCATGAGGAGTACCATGACTCTCGCCATGGCCATGGGCGTATGAGACGAGGAACATATTTGACAAGTTTGAAGCGGGCAGGCAACGAAAGGAAAGGATCTTAGAAAGGGGCCCCTGGAAAAAAAAAACAAAAACCCCGCGAACAGGCCATCCGTACTCGGGTTCGGTACACAAATTCACAATTTCGTACCAGATGA
ACAGCCACGACGAGCGGAGGCGCTGTTAAATGCTGATTCTTTGTAATTTTACAGACAGATGGAGACTATTTTCTTTTGGATCGCGTACCTGTGCGTTGAGTTACAGGTAACGTTCATCTGAGTTTTTTTTTTTCTCTTTTCAGAGTCGAAATCGGAAAACGCTACGAGACGTGCTTAGGGCTTTGTTGATCATGGCCGTG
GTGGTGGAAAATGAAGCCTTTAGTGATACGGCCGTGGAATTAGGGGTAAATGTAGGGTCTGTAGGTCGAAGCTTTAGCCGTTTAGGGGCTTCGGAAGACCAGTCTTTGATGAGGTACGAGAATCCGAGTTCAGACGTGAAAGATTTGCAAGAAAGTGCTCATCACAGTGTCCAGACGCAGCAGCAGCAAAGCGCACACCA
GAATCAGCAAAATCAGTTGAACATGCGGTTACATGAGCAAAATTTACTGAAGACTCAACATTTACAGCAAAATAGTCAGTCAAATCCGCAGAGTTTGCTTCAAAATCTGGAGATTCAGCAGATGAAGCAAAATGTTCAACAGAAACAGCTAAGTTTTCAGCAGAATCAGCTGAGGTTTCAGCAATTGCAGCAAAATAGTC
ATCAGGACCAGAATAATATGGAGCAAAATGTCCATATTCAGCACTCTCAGCATAGTCTTCAGCAAAATCATCAGAATGTGCAACTTTTACATATACAACAAGGTGCCATGCGAAATGTAAATATTCAAATAAACCCTTCCACCCAGGGTCTGCAGCATCAGGCCGTATTGGCAAACCCTGCGCTTTCTGCCTCTGAACAA
CATCAGCAACGCCCGAACGGTGCTGCGTCGCATGAGAAGGCAGGACTGGGGACCGAAAATGCTGCGGCTTCACAGGATTTCAGTCGTGACATGAGGGAATTGGAAGATCTGCTCTCAAAATTAAACCCTATGGCCGAGGAGTTTGTGCCACCTTCCCATCTTAATCATTTGCCTGCCGTTTCCTTCTTCAATGCTTTTAT
GGTAAACAACAATAACAACAACACCGATAACTACAATAATAATAACAATAGACGGAAGAAAAACAACTATCAGGGAAAACGAAGAGTGAATAGCAGAACCAATTTAGCCCAGCAAGAAGATAGCATTAGAAGAACAGTCTACGTTTCAGACATTGATCAACAGGTGACTGAAGAGCAGCTTGCAGCTTTGTTTATCAATT
GTGGGCAGGTGGCTTCAATGCTTCCTCTGGTGTTAATTGTTTGTCTTTTTTTGTAATCTACAGCTTCTTTCTCTTCTTTGATATGCTTATCTCCTCCTTGGATATTGTAATGGATACGTATTCCTAAAGCTGGAACATCTTTTGGTTGAAGGTTGTTGATTGTCGTGTGTGTGGTGATCCAAATTCAGTTCTCCGTTTTG
CTTTTGTAGAATTTACTGATGAGGgtaagtattcttctgtgacaactgataaacagaagcagcagtttttcctagtataattttgaatttagagattgccttttccaatgtcatctgtgtctgcagAGAGTGCAAGAGCAGCTTTGAGTCTTGCTGGCACCATGCTGGGATACTATCCTGTGAGGGTCTTGCCTTCTAAA
ACTGCTATTGCCCCTGTAAATCCAACATTTCTTCCGAGGGTGGGTAATGTAATGTCTACATATGATCTCTACCCAGAAGATGTTACTTTGTCATAGGAAAGCGTTATAAATAGGTGTAGTATTAGTTTTTAAATTTCAGTTAGTCGCCTTATGCACACCTTTATTAAAACAAAATTTCAATTAGATAGTTTAAATGGTTT
GATATCAAACAATGCAGTCAGAAGATGAGCGTGAAATGTGTGCACGGACAATCTATTGTACAAATATTGACAAGAAGGTTAAGTCTAAATCCTTTGAGTTTTAGTTATTGCTTGTCTGGCATACCGAATTTATGGTATGGTGTGCTATCATTGCATTGCATGTTTTTTCTTAATCCAAGTTTACACTGCTGTTTTATTGA
AGTATGGATTGAAATGTTTTGTATTTGAATGTGGATTAAGCCACAGTGGTAGCTGAAAGCTTTATTCTATGCTGTGGTGAATGGTCTTGCAGGTTTCCCAAGCAGATGTGAAACTCTTCTTTGAGTCACTTTGTGGTGTGGTTTCTCGTTTGAGACTGTTAGGAGATTATCATCATTCAACTCGTATAGCCTTTGTTGAG
TTTGTTATGGTAAGTGGCTTCTAGACCAATATGTAGAAT