sp|Q8LGG8|USPAL_ARATH ----> Universal stress protein A-like protein
Intron 1 GTATTGTTGA ... GCTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.27 | 158.8 | 30 | 61 |
| A2 | 20.7 | 159 | 28 | 55 |
| A3 | 20.21 | 165.8 | 24 | 60 |
| A4 | 25.79 | 82 | 15 | 42 |
| A5 | 18.32 | 78 | 10 | 25 |
| A6 | 17.42 | 1344 | 130 | 437 |
| A7 | 18.94 | 1093.8 | 145 | 366 |
| A8 | 17.79 | 1311.8 | 141 | 427 |
| A9 | 17.7 | 1260.2 | 130 | 412 |
| A10 | 17.75 | 922 | 110 | 288 |
>TRINITY_DN100799_c0_g2_i11 from sample A4 / Example spliced isoformAAGACAGTAAACCCGCGGAAATGCAAGGCCGGAATCTTCTTCGATTCGAACGCACTTGAACACGCTGGTTTTCCCATTTATTTGTGCCTACAACTTCCCATCCTCGCCATAACCTCTTTATTCGCTGCATAGAGCAAAACAATTTAGTGGGTGTGAAGATCGGTGTAAGAAGAGACAAAATATTGTGCATTGGAGTCAAT
GGAGGAGCATAATATATCAGGCAGAGTCATATTGGTGGCCATAGACAAGAGCAAGGAGAGCTGTGATGCTCTCCAATGGGCTCTTAACAACCTGTTTACATCCCAGGATAGAATCATTCTCATTCATGCTCAGCGCCTTCCAGTTTCCTCTTTCTCAACTGGAAACCCAGGTTTCATGATGCCAGTAGATGTGCTCAAGA
TATTGGAAAACGATATCCAGAAGTCTACAGAGAAGATTTTCGCCATAGCAACTGAAATATGCAAAGCCAAAAATGTGACTCCGGAAACACATGCTCACAATGGAGATGCCAGGGAGGTCATCTGCGATGCTGCCAAAAAGTATAATTCTGACATGTTGGTGATTGGTAGTCATGCATACGGGGTTCTTAAGAGGGCAGTT
CTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTTATACTTGGCCTTCCTGCCTGATATGAAACAACAGATACTACATCTAATTGAAATATAGACTAGGGAATTTCAGA
AGTCATTCATAACAGATGAATATCTGTTTGTTATTTTCGTTTTATTTTAACTTTGAAAATATACTCTGTTTTATGTATGATTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTAT
GTATGGTTGTATAAAAATATTCAAGTATGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTGCGATGCTGCCAAAAAG
>TRINITY_DN100799_c0_g2_i2 from sample A4 / Example unspliced isoform:AAGACAGTAAACCCGCGGAAATGCAAGGCCGGAATCTTCTTCGATTCGAACGCACTTGAACACGCTGGTTTTCCCATTTATTTGTGCCTACAACTTCCCATCCTCGCCATAACCTCTTTATTCGCTGCATAGAGCAAAACAATTTAGTGGGTGTGAAGATCGGTGTAAGAAGAGACAAAATATTGTGCATTGGAGTCAAT
GGAGGAGCATAATATATCAGGCAGAGTCATATTGGTGGCCATAGACAAGAGCAAGGAGAGCTGTGATGCTCTCCAATGGGCTCTTAACAACCTGTTTACATCCCAGGATAGAATCATTCTCATTCATGCTCAGCGCCTTCCAGTTTCCTCTTTCTCAACTGGAAACCCAGGTTGATTTCTTCAGGCATTTTTCTCAGGCT
GTTATGGAGATTTGTAGGATGTAATTCACTGTAAAATCATACAAGGCTCTTGAGTTTATTAAGTGAAAGGATTTTAATCTTTTTCGACACATACAACAGTAGAATGGGCGTGTTCTGTTCGTTCATCTCAGAGCTTGTGATGGCATTTCATCTTGAAGTGTTTTATTCTTTTTTGGGATTGTTATAGAGGCCGAGTTCTG
ATTGCATTTCGGCGTGGCCAGGTTTCATGATGCCAGTAGATGTGCTCAAGATATTGGAAAACGATATCCAGAAGTCTACAGAGAAGATTTTCGCCATAGCAACTGAAATATGCAAAGCCAAAAATGTAAGTTAGGTATACTCATATTGTGATTGGAATTAAAGAATTTGGTGTGAACTAGATCGGAGGGTTGATTCAAAA
TTTAATATAGTTTTATTTTCTTTAATCATTGGCTGACTGTATTGAATCTTTCCTAAACATGCTTTCATTACAAATTGCGCGGGGAGAAGGAAGGCCCCTGGAGCTCCATCTTGGCGCGGGGCTCCATCAACACTCTGTTTGTGGTATAACAGTTCACTGAATCTACATGGTTGATTGGGTTTATATAATATAGACATTCG
GAGAGATCTATTTGAATTTTGGTTTTTGTCCATCAAGAAGATGAAGATGTTGTTATCAGGTTTATGCGAAGATGAGGATCGTTTTGAATGTCCATGGATAGTTTAACTCTCTTCCAAGTAATTTTCATCCTCCTAAACAGATAGATAATCTATAGTAATTTAACCTCCACAAATGCCAACTGCTCTTTAGATTGCCAAGC
TGGAGTTCACATAAGCTTGAGATTAAATAGATCCATTTTCATAGGCTTCTTAATTGAGTGTTGAAATCCTTCAATTCATTTGAGAAAAAAGTGCAATTAGAAGCCAGTGCGAATTTCAGAATGTGAGTGGCTAATATTGAGCCTTGATCTTGATCTTTTCTGTTTCAAAATCAAAACCCATCTTTCAGCAAGATACTGGT
TCAAATTCAATTTACGGTTAAGTGCCTTTATGCTTGTTTTGGAATTTTTTGATACATTTAACTTCAAGCAGATTCTATCCATTAAGGTCTTATCTCATTCTAGTTAGGACTGCAAACTTTAATAGGAAGGTCCTTCAATGGATCAGCTCCATATTATCACTTTTATCAATTTTGCAAAATGTAATTGTGAGGTTTATTGC
CATCACTCTATTGGTTATGATATTCATATTTTTTTTCTTCTTGGAATATATATCAGGGGGAAATCTGCAGGGTAGTTTTTCTCGTTTTGAGGATGGTATTCAGGGTAAACCAGATTCTTTAGGATTCAAAGTCAATATAACAATATGGTTATTTAAGATCTCAGAATCAACAATATGCTTATTTAAGAGCTCAAAATCTT
GAGTGAGTAGGGCAACAATCAGTCCTAATTACTCAAACTACACCCAAGTCATGATATTCATCCTGTCATTGTAAGATCTGAGATATTAGTACACTCTTGCTAATACCAATTCGAAGACCACAATACACAGTCTTGAGCACGCCCATGGCATTCTGCAGCTTTTCCGGCTTCTTTTCCTCTGTAATTCCATAATGGAAAAC
CTTAGAAGATTTTTCCTTCTACTGTCCCAGGTGACTCCGGAAACACATGCTCACAATGGAGATGCCAGGGAGGTCATCTGCGATGCTGCCAAAAAGTATAATTCTGACATGTTGGTGATTGGTAGTCATGCATACGGGGTTCTTAAGAGgtattgttgaatgaaatttccctctgttggcagctctcagaagtgcatttg
caaaagaaacaatgttatatgcttgatttggaatgattcatgtcattgttatttcagaaaactggcaattttcttttctggtttttattgagtttttattttgtaatagaacacttgttttaagcaaaggttattggcttctgcagGGCAGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGT
TGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTTATACTTGGCCTTCCTGCCTGATATGAAACAACAGATACTACATCTAATTGAAATATAGACTAGGGAATTTCAGAAGTCATTCATAACAGATGAATATCTGTTTGTTATTTTCGTTTTATTT
TAACTTTGAAAATATACTCTGTTTTATGTATGATTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGTTCTTGGCAGTGTGAGTG
ACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTGCGATGCTGCCAAAAAG
Intron 2 GTCAGTCTCT ... GCGTGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.51 | 54.7 | 10 | 0 |
| A2 | 22.72 | 47.7 | 14 | 2 |
| A3 | 21.63 | 47.3 | 13 | 1 |
| A4 | 41.04 | 46 | 32 | 15 |
| A5 | 11.57 | 23 | 3 | 0 |
| A6 | 16.53 | 147 | 29 | 1 |
| A7 | 26.41 | 136.7 | 49 | 2 |
| A8 | 17.68 | 112 | 24 | 2 |
| A9 | 16.75 | 149.7 | 30 | 7 |
| A10 | 21.58 | 109.3 | 30 | 3 |
>TRINITY_DN100799_c0_g2_i9 from sample A4 / Example spliced isoformATGAATTCGAAGGCGCTCGAACATACTAGTTTTGAGTTTTCCCATTTCTGTCTGCCCACAACTTCCATAATCTCCCAGCAAAACAATTTAGTGGGTGTGAAGATCGGTTTAAGCAGAGACAAAATCTAGTGCTTTATTGGAGTCCATGGAGGAGCAGAAGAAATCAAGCAGACTCATATTGGTGGCCATAGACGAGAGCG
AGGAGAGCATCAACGCTCTCCGATGGGCTCTTAACAAACTGTTTACATCGCAGGATAGAATCATTCTCATTCATGCTCAGCGCTCTCCAAGTTTCTCTCTAGCAAGTGGAAGCTCAGGTTATATGGTGCCAGTAGATGTGCTGAAGATGTTGGAAAACGATATCAAGAAGACTACCGAGAGGATTTTGGCCAAAGCAAAA
GAAATATGCAAAGCAAAAAATTTGACTCCGGCGACGATAGCCCAAACTGGAGATGCCAAGGAGGTCATATGCAATGCTGCCAAAAAATATAATCCTGACATGTTGGTGCTAGGTAGTCATGGATTCGGAGCTCTTAAGAGGGCATTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGT
GGTGAAGCCCCAGAAGAACGAGGCTAATTGATTTTCCTTAGTGTATAATTCCATCGATGTGCTCTGAATCATCTTATGCTTGGTGGCGTTTATTCCTGATATGAAAATGTAGATGGTACATCTAATTGAAATATTTCAAAACATGGTCCAGGGAATATCAGTATCAGTAGGCACTCATAGTATTTTCCATTAGTTTTTTT
AAGCATCCAAATAATACTATTTATGCATATGGTTGTATTGAAGGATTAGAATATGGAATGACAGGAAGGATTAGAATATGACATGACAAGAACCAGAAAAATGCAATGGTTGATGAAATATATTTTGCCACTGCATGATTTGATATTTCATTTGAATCATGCCCACTTTGCACTTATTTTGTCGGATCATATAAAACTCA
CACTGACATTCTATGAACTGGGATTATCATGTACTGTCAATTCACAAGTCGGGATATTAAGGAACACTGTTATTCAAAACATTTGTCTCTTCTCTTTGTATGATAAGCTGAACTTTGGCGTGAACAATTATCCACTTAGTTCATGCACAATTAGTTCAAGCAGAAGTCACAGGGTATCAAATTTGACAGTAATTCCTACA
GTTGAGCTCTACAAAAAAAGGTTCCGGCATTATATTTGCAGCTCAAGTTTCAAGTTTCATGAGTAAACATCTTTGCTCCGGCATTGCTTGAAAGCTGTAGACATGTACAGGATTTTGGACTTCAGAGCACACATGCTCAGGACAGAACATACACTAAGAAAAGACACTTGCACAGCCAAAAAAGATGAAGCTCAGAGATC
GTTTCCCTATAAAAGGAACTGGAAGGTTGGATATGGTATTCTATTTTCGGACCAGAATCATGTTCACAACAATGAGG
>TRINITY_DN100799_c0_g2_i12 from sample A4 / Example unspliced isoform:ATGAATTCGAAGGCGCTCGAACATACTAGTTTTGAGTTTTCCCATTTCTGTCTGCCCACAACTTCCATAATCTCCCAGCAAAACAATTTAGTGGGTGTGAAGATCGGTTTAAGCAGAGACAAAATCTAGTGCTTTATTGGAGTCCATGGAGGAGCAGAAGAAATCAAGCAGACTCATATTGGTGGCCATAGACGAGAGCG
AGGAGAGCATCAACGCTCTCCGATGGGCTCTTAACAAACTGTTTACATCGCAGGATAGAATCATTCTCATTCATGCTCAGCGCTCTCCAAGTTTCTCTCTAGCAAGTGGAAGCTCAGgtcagtctcttgaatgtttttttctctggctgttgtggagattggtaggatgcaattcattgtaaaatgatataaggctcttg
ggtttattgattgaaaggattttgagctttttggccacagaaatctgtagaatgaccgtgttgtgttcattcatctcagagcttgtgatgggatttcatcttgaagtgttttactctgttttggttttgttatagaggctcagttctgattgcagttttgcgtgggcagGTTATATGGTGCCAGTAGATGTGCTGAAGAT
GTTGGAAAACGATATCAAGAAGACTACCGAGAGGATTTTGGCCAAAGCAAAAGAAATATGCAAAGCAAAAAATGTAAGATCTACTCATATTGTACATTATAATTAAAGAAATTGATGTGAACTAGATTGCAGTGTCGATTCCAGATTTAAAGTAGTTTTGATGTTCAGTTGAATGGTAATATTGAAACCGTTTTTCCTTT
AAGGCATTGAATCCTTCCTAACCGGGCTTTCAATACAAATTGCGCCGGGAGCTTCACCTTGACTTGGGGATCCAAGCTGGAGGATGTAGCTCTTGATTTCATACAAATGGTTCAAGTATCAAATATTGCAATTCAAGATATATAATCTTGAGTTTTGCAATCTTTGGATGCAGATTAGACCGGGGTTTATACAGTTTTAA
GTATGCAAATTTCTTAATGGAGTTGTATGGAAAAATAATGTGTATATAGAAGTCACTGTGGATCTCCCAGGTCAGGCCATGGTGAGAACATGAAATAGACAAGATATATAATCTTGAGTTTTGCAATCTTGGGATGCAGATTAGGCCGGGGTTTATACAGGTTTAAGAATGCACATTTCTTAATGGAGTGGTATGAAAAA
TAATGTGTATATAGAAGCCACTGTGGATCTCCCAGGCCAGGTCATGGTGAGAATGTGAAATAAACATGAAAGTCAAGATATATAATCTTGATTTTTGCAATATTGGGATGCAGATTAGGCCAGGGTATATACAGGTTTAAGTATGCACATTTCTTAATGGAGTGGTATGAAAAATAATGTGTAGAAGTCACTGTGGATCT
CCCAGGTCTGGTCATGGTGATAATGTGAAATAAACATGAAAGTCAAGATATATAATCTTGATTTTTGCAATATTGGGATGCAGATTAGGCCAGGGTATATACAGGTTTAAGTATGCACATTTCTTAATGGAGTGGTATGAAAAAATAATGTGTACATAGAAGCCTCTCTGGATCTCCCAGGTCAGGTCATGGTGAGAATT
TGAGATAAACATGAAAGTCAAGATATATAATCTTGAGTTTTGCAATCTTGGGATGCAGATTAGGCCGGGGTTTATACAGGTTTAAGAATGCACATTTCTTAATGGAGTGGTATGAAAAATAATGTGTATATAGAAGCCACTGTGGATCTCCCAGGCCAGGTCATGGTGAGAATGTGAAATAAACACGAAAGTCAAGGTCA
TGGTGAGAATGTGAAATAAACATGAAAGTCAAGATATATGATCTTGAGTTTTGCAATAATGGGATGCAGATTAGGCCGGGGTTTATACACGTTTAAGTATGCACATTTCTTATTGAGTTGTATGAAAAAATAGTGTGTATATAGAAGTCTCAGTGGATCTCCCAGGTCGGGTCATGGTGAGAATGTGAAATAATCATGAA
AGTCAAGATATATAATCTTGAGTTTTGCAATCTTGGGATGCAGATTAGGCCGGGGT
Intron 3 GTATTGTTTA ... AATTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.67 | 479 | 89 | 7 |
| A2 | 13.74 | 383 | 61 | 2 |
| A3 | 17.97 | 379 | 83 | 2 |
| A4 | 15.81 | 362 | 68 | 7 |
| A5 | 13.26 | 157 | 24 | 1 |
| A6 | 12.56 | 2380 | 342 | 81 |
| A7 | 13.8 | 2918 | 467 | 55 |
| A8 | 12.59 | 3903 | 562 | 82 |
| A9 | 14.62 | 3351 | 574 | 107 |
| A10 | 13.33 | 2438 | 375 | 56 |
>TRINITY_DN46530_c0_g3_i8 from sample A7 / Example spliced isoformAATCTATCCAAATTTAGACTGACCTGAACCCAAGTTATATACCCATCTTCCAGCGTGAAGAAATTCCTAGATTTAAAAAAAGAAAATCCTTCCAGCGTGAAGAAATTCCTAGATTTAAAAAAAGAAAAGAAACAAACCAACGCTCAGAATCAAAACGCCAATAAAAACGCGCGGAAGACAAGAAACCCACGGAAACGAAA
GGCCGCAAACATACTGGTTTTCCCATTTATGTGTACCTACAACTTCCGACCTTCACCATAATTATTTTCTTGATTGCAAAGAACAACAGAATTTAGTGGGTGTGAAGTTAGGTGTAAGCAGAGGGAATCTACTGCATTAATGGAGTCCATGGAGGAGCAGAGGATATCAAACAGGCTCATATTGGTGGCCATAGACGAGA
GCAAGGAGAGCATCAACGCTCTCCAATGGGCTCTTCACAACCTCGTTACATCGCATGATAGGGTCATTCTCATTCATGCTCAGCGCGATCCAATTTCCCTTCTCGTTATCGGAAACCCAGGTTTGATGTTGCCAGTAAATGTGCTTAAGACGTTGGAAAACGATATCAAGAAGGCTACTGACAAGATTTTTGCCAAAGCA
ACGGAAATATGTAAAGCCAAAAATGTGACTCCGGAGACCGACGCTCACACTGGAGATGCCAGGGAGGTCATATGCGATGCTGCCAAAAAGTACAATCCTAACATGTTGGTGCTAGGTAGTCATGGATACGGAGCTCTTAAGAGGGTGGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACGGTGCCCTGTTGT
TGTCGTGAAGCCCAGGGATTTTCGTTAGCCTCATCCCATCTATGTGCTCTGAATCATCTTATACTTGTTGGCCTTTATGCAGATACTACATAATACTACATCCAATTGTAATATTTGAAAACATGGACCAGAGAATTTCAGCAGTCATTTATAATATTTATTGGTAATTTCCATTATTGTGTAATTTGAAGAATGGAATC
AGTGTGATTTGATATTTCATTTGAATCATGCCTTGTTTGCATCTTATTATGTTGGGTCATATTAAAATCTCATGGACATTCTACCAACTGGGATTATCTGATTATTCACAAGTAGTGATATTAAGGAATATTTATAATAGTACAGACACTTAATTTGTGGTCAACGAATATTGATAGGCTACAAGTTAAGTGCTATCTAT
AAGCTATCCGTTACATGTTCTTGCC
>TRINITY_DN46530_c0_g3_i10 from sample A7 / Example unspliced isoform:AAGGAGAGCATCAACGCTCTCCAATGGGCTCTTCACAACCTCGTTACATCGCATGATAGGGTCATTCTCATTCATGCTCAGCGCGATCCAATTTCCCTTCTCGTTATCGGAAACCCAGGTTTGATGTTGCCAGTAAATGTGCTTAAGACGTTGGAAAACGATATCAAGAAGGCTACTGACAAGATTTTTGCCAAAGCAAC
GGAAATATGTAAAGCCAAAAATGTGACTCCGGAGACCGACGCTCACACTGGAGATGCCAGGGAGGTCATATGCGATGCTGCCAAAAAGTACAATCCTAACATGTTGGTGCTAGGTAGTCATGGATACGGAGCTCTTAAGAGgtattgtttaacgaaatttcgccctatttgcagcttgaagaagtgcaattgtaaaacaa
gcaatgttattcatatgcttgatttggaatgattcatgtcattgttgtttcagaaaactggcatttctcttctcttatttatttgttttgtaataccacacttgttttaagcagagaatattgaattctgcagGGTGGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACGGTGCCCTGTTGTTGTCGTGAAG
CCCAGGGATTTTCGTTAGCCTCATCCCATCTATGTGCTCTGAATCATCTTATACTTGTTGGCCTTTATGCAGATACTACATAATACTACATCCAATTGTAATATTTGAAAACATGGACCAGAGAATTTCAGCAGTCATTTATAATATTTATTGGTAATTTCCATTATTGTGTAATTTGAAGAATGGAATCAGTGTGATTT
GATATTTCATTTGAATCATGCCTTGTTTGCATCTTATTATGTTGGGTCATATTAAAATCTCATGGACATTCTACCAACTGGGATTATCTGATTATTCACAAGTAGTGATATTAAGGAATATTTATAATAGTACAGACACTTAATTTGTGGTCAACGAATATTGATAGGCTACAAGTTAAGTGCTATCTATAAGCTATCCG
TTACATGTTCTTGCC
Intron 4 GTTGATTTCT ... GCGTGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.34 | 165 | 56 | 38 |
| A2 | 29.63 | 152 | 64 | 20 |
| A3 | 34.4 | 164 | 86 | 24 |
| A4 | 33.51 | 125 | 63 | 24 |
| A5 | 28.33 | 86 | 34 | 9 |
| A6 | 25.4 | 884 | 301 | 41 |
| A7 | 28.19 | 851 | 334 | 34 |
| A8 | 24.16 | 741 | 236 | 47 |
| A9 | 26.16 | 779 | 276 | 47 |
| A10 | 27.95 | 794 | 308 | 65 |
>TRINITY_DN100799_c0_g2_i11 from sample A4 / Example spliced isoformAAGACAGTAAACCCGCGGAAATGCAAGGCCGGAATCTTCTTCGATTCGAACGCACTTGAACACGCTGGTTTTCCCATTTATTTGTGCCTACAACTTCCCATCCTCGCCATAACCTCTTTATTCGCTGCATAGAGCAAAACAATTTAGTGGGTGTGAAGATCGGTGTAAGAAGAGACAAAATATTGTGCATTGGAGTCAAT
GGAGGAGCATAATATATCAGGCAGAGTCATATTGGTGGCCATAGACAAGAGCAAGGAGAGCTGTGATGCTCTCCAATGGGCTCTTAACAACCTGTTTACATCCCAGGATAGAATCATTCTCATTCATGCTCAGCGCCTTCCAGTTTCCTCTTTCTCAACTGGAAACCCAGGTTTCATGATGCCAGTAGATGTGCTCAAGA
TATTGGAAAACGATATCCAGAAGTCTACAGAGAAGATTTTCGCCATAGCAACTGAAATATGCAAAGCCAAAAATGTGACTCCGGAAACACATGCTCACAATGGAGATGCCAGGGAGGTCATCTGCGATGCTGCCAAAAAGTATAATTCTGACATGTTGGTGATTGGTAGTCATGCATACGGGGTTCTTAAGAGGGCAGTT
CTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTTATACTTGGCCTTCCTGCCTGATATGAAACAACAGATACTACATCTAATTGAAATATAGACTAGGGAATTTCAGA
AGTCATTCATAACAGATGAATATCTGTTTGTTATTTTCGTTTTATTTTAACTTTGAAAATATACTCTGTTTTATGTATGATTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTAT
GTATGGTTGTATAAAAATATTCAAGTATGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTGCGATGCTGCCAAAAAG
>TRINITY_DN100799_c0_g2_i4 from sample A4 / Example unspliced isoform:AAGACAGTAAACCCGCGGAAATGCAAGGCCGGAATCTTCTTCGATTCGAACGCACTTGAACACGCTGGTTTTCCCATTTATTTGTGCCTACAACTTCCCATCCTCGCCATAACCTCTTTATTCGCTGCATAGAGCAAAACAATTTAGTGGGTGTGAAGATCGGTGTAAGAAGAGACAAAATATTGTGCATTGGAGTCAAT
GGAGGAGCATAATATATCAGGCAGAGTCATATTGGTGGCCATAGACAAGAGCAAGGAGAGCTGTGATGCTCTCCAATGGGCTCTTAACAACCTGTTTACATCCCAGGATAGAATCATTCTCATTCATGCTCAGCGCCTTCCAGTTTCCTCTTTCTCAACTGGAAACCCAGgttgatttcttcaggcatttttctcaggct
gttatggagatttgtaggatgtaattcactgtaaaatcatacaaggctcttgagtttattaagtgaaaggattttaatctttttcgacacatacaacagtagaatgggcgtgttctgttcgttcatctcagagcttgtgatggcatttcatcttgaagtgttttattcttttttgggattgttatagaggccgagttctg
attgcatttcggcgtggccagGTTTCATGATGCCAGTAGATGTGCTCAAGATATTGGAAAACGATATCCAGAAGTCTACAGAGAAGATTTTCGCCATAGCAACTGAAATATGCAAAGCCAAAAATGTAAGTTAGGTATACTCATATTGTGATTGGAATTAAAGAATTTGGTGTGAACTAGATCGGAGGGTTGATTCAAAA
TTTAATATAGTTTTATTTTCTTTAATCATTGGCTGACTGTATTGAATCTTTCCTAAACATGCTTTCATTACAAATTGCGCGGGGAGAAGGAAGGCCCCTGGAGCTCCATCTTGGCGCGGGGCTCCATCAACACTCTGTTTGTGGTATAACAGTTCACTGAATCTACATGGTTGATTGGGTTTATATAATATAGACATTCG
GAGAGATCTATTTGAATTTTGGTTTTTGTCCATCAAGAAGATGAAGATGTTGTTATCAGGTTTATGCGAAGATGAGGATCGTTTTGAATGTCCATGGATAGTTTAACTCTCTTCCAAGTAATTTTCATCCTCCTAAACAGATAGATAATCTATAGTAATTTAACCTCCACAAATGCCAACTGCTCTTTAGATTGCCAAGC
TGGAGTTCACATAAGCTTGAGATTAAATAGATCCATTTTCATAGGCTTCTTAATTGAGTGTTGAAATCCTTCAATTCATTTGAGAAAAAAGTGCAATTAGAAGCCAGTGCGAATTTCAGAATGTGAGTGGCTAATATTGAGCCTTGATCTTGATCTTTTCTGTTTCAAAATCAAAACCCATCTTTCAGCAAGATACTGGT
TCAAATTCAATTTACGGTTAAGTGCCTTTATGCTTGTTTTGGAATTTTTTGATACATTTAACTTCAAGCAGATTCTATCCATTAAGGTCTTATCTCATTCTAGTTAGGACTGCAAACTTTAATAGGAAGGTCCTTCAATGGATCAGCTCCATATTATCACTTTTATCAATTTTGCAAAATGTAATTGTGAGGTTTATTGC
CATCACTCTATTGGTTATGATATTCATATTTTTTTTCTTCTTGGAATATATATCAGGGGGAAATCTGCAGGGTAGTTTTTCTCGTTTTGAGGATGGTATTCAGGGTAAACCAGATTCTTTAGGATTCAAAGTCAATATAACAATATGGTTATTTAAGATCTCAGAATCAACAATATGCTTATTTAAGAGCTCAAAATCTT
GAGTGAGTAGGGCAACAATCAGTCCTAATTACTCAAACTACACCCAAGTCATGATATTCATCCTGTCATTGTAAGATCTGAGATATTAGTACACTCTTGCTAATACCAATTCGAAGACCACAATACACAGTCTTGAGCACGCCCATGGCATTCTGCAGCTTTTCCGGCTTCTTTTCCTCTGTAATTCCATAATGGAAAAC
CTTAGAAGATTTTTCCTTCTACTGTCCCAGGTGACTCCGGAAACACATGCTCACAATGGAGATGCCAGGGAGGTCATCTGCGATGCTGCCAAAAAGTATAATTCTGACATGTTGGTGATTGGTAGTCATGCATACGGGGTTCTTAAGAGGGCAGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCC
TGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTTATACTTGGCCTTCCTGCCTGATATGAAACAACAGATACTACATCTAATTGAAATATAGACTAGGGAATTTCAGAAGTCATTCATAACAGATGAATATCTGTTTGTTATTTTCGTTTTA
TTTTAACTTTGAAAATATACTCTGTTTTATGTATGATTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGTTCTTGGCAGTGTGA
GTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTGCGATGCTGCCAAAAAG
Intron 5 GTATTGTTGA ... GATTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.38 | 164 | 14 | 16 |
| A2 | 5.6 | 160 | 11 | 8 |
| A3 | 7.74 | 155 | 16 | 10 |
| A4 | 16.29 | 125 | 19.7 | 29 |
| A5 | 5.26 | 78 | 3.7 | 5 |
| A6 | 5.37 | 1128 | 46 | 82 |
| A7 | 3.96 | 1067 | 30 | 58 |
| A8 | 3.47 | 1421 | 46.3 | 56 |
| A9 | 4.25 | 1239 | 46 | 64 |
| A10 | 4.72 | 955 | 43.7 | 51 |
>TRINITY_DN109774_c0_g3_i3 from sample A3 / Example spliced isoformTTCAAAACCAAAACTACCATTAAAACGTGTCGAAAGGAAACACAAGGTCGGAATCTTCATGAATTCGAAGGCGCTCGAACATACTAGTTTTGAGTTTTCCCATTTCTGTCTGCCCACAACTTCCATAATCTCCCAGCAAAACAATTTAGTGGGTGTGAAGATCGGTTTAAGCAGAGACAAAATCTAGTGCTTTATTGGAG
TCCATGGAGGAGCAGAAGAAATCAAGCAGACTCATATTGGTGGCCATAGACGAGAGCGAGGAGAGCATCAACGCTCTCCGATGGGCTCTTAACAAACTGTTTACATCGCAGGATAGAATCATTCTCATTCATGCTCAGCGCTCTCCAAGTTTCTCTCTAGCAAGTGGAAGCTCAGGTTATATGGTGCCAGTAGATGTGCT
GAAGATGTTGGAAAACGATATCAAGAAGACTACCGAGAGGATTTTGGCCAAAGCAAAAGAAATATGCAAAGCAAAAAATTTGACTCCGGCGACGATAGCCCAAACTGGAGATGCCAAGGAGGTCATATGCAATGCTGCCAAAAAATATAATCCTGACATGTTGGTGCTAGGTAGTCATGGATTCGGAGCTCTTAAGAGGG
CATTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTGGTGAAGCCCCAGAAGAACGAGGCTAATTGATTTTCCTTAGTGTATAATTCCATCGATGTGCTCTGAATCATCTTATGCTTGGTGGCGTTTATTCCTGATATGAAAATGTAGATGGTACATCTAATTGAAATATTTCAAAAC
ATGGTCCAGGGAATATCAGTATCAGTAGGCACTCATAGTATTTTCCATTAGTTTTTTTAAGCATCCAAATAATACTATTTATGCATATGGTTGTATTGAAGGATTAGAATATGGAATGACAGGAAGGATTAGAATATGACATGACAAGAACCAGAAAAATGCAATGGTTGATGAAATATATTTTGCCACTGCATGATTTG
ATATTTCATTTGAATCATGTCTTATTCTTATTGTGTTGGATCATATGGAATTCT
>TRINITY_DN109774_c0_g3_i1 from sample A3 / Example unspliced isoform:TTCAAAACCAAAACTACCATTAAAACGTGTCGAAAGGAAACACAAGGTCGGAATCTTCATGAATTCGAAGGCGCTCGAACATACTAGTTTTGAGTTTTCCCATTTCTGTCTGCCCACAACTTCCATAATCTCCCAGCAAAACAATTTAGTGGGTGTGAAGATCGGTTTAAGCAGAGACAAAATCTAGTGCTTTATTGGAG
TCCATGGAGGAGCAGAAGAAATCAAGCAGACTCATATTGGTGGCCATAGACGAGAGCGAGGAGAGCATCAACGCTCTCCGATGGGCTCTTAACAAACTGTTTACATCGCAGGATAGAATCATTCTCATTCATGCTCAGCGCTCTCCAAGTTTCTCTCTAGCAAGTGGAAGCTCAGGTTATATGGTGCCAGTAGATGTGCT
GAAGATGTTGGAAAACGATATCAAGAAGACTACCGAGAGGATTTTGGCCAAAGCAAAAGAAATATGCAAAGCAAAAAATTTGACTCCGGCGACGATAGCCCAAACTGGAGATGCCAAGGAGGTCATATGCAATGCTGCCAAAAAATATAATCCTGACATGTTGGTGCTAGGTAGTCATGGATTCGGAGCTCTTAAGAGgt
attgttgaatgagatttcccttatttgcagctctaaaagtgcatttccaaaataagcaatgttactgatatatttgctttataatgattcatgtcattgtttcagaacactggcagttctcttctcaggtttctattgggtttttattttgtaatctaactcttgttttaagcgaaggatattggattctgcagGGCATT
TCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTGGTGAAGCCCCAGAAGAACGAGGCTAATTGATTTTCCTTAGTGTATAATTCCATCGATGTGCTCTGAATCATCTTATGCTTGGTGGCGTTTATTCCTGATATGAAAATGTAGATGGTACATCTAATTGAAATATTTCAAAACATGG
TCCAGGGAATATCAGTATCAGTAGGCACTCATAGTATTTTCCATTAGTTTTTTTAAGCATCCAAATAATACTATTTATGCATATGGTTGTATTGAAGGATTAGAATATGGAATGACAGGAAGGATTAGAATATGACATGACAAGAACCAGAAAAATGCAATGGTTGATGAAATATATTTTGCCACTGCATGATTTGATAT
TTCATTTGAATCATGTCTTATTCTTATTGTGTTGGATCATATGGAATTCT
Intron 6 GTAAGTTAGG ... ACTGTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.2 | 87 | 55 | 32 |
| A2 | 22.4 | 94 | 25.5 | 29 |
| A3 | 23.68 | 109 | 31.5 | 36.5 |
| A4 | 27.75 | 71 | 28 | 27 |
| A5 | 21.6 | 55 | 21 | 9.5 |
| A6 | 14.87 | 744 | 104.5 | 157.5 |
| A7 | 16.73 | 686 | 130.5 | 148 |
| A8 | 18.41 | 717 | 114 | 212 |
| A9 | 16.94 | 742 | 131 | 174.5 |
| A10 | 17.6 | 591 | 120.5 | 135 |
>TRINITY_DN100799_c0_g2_i11 from sample A4 / Example spliced isoformAAGACAGTAAACCCGCGGAAATGCAAGGCCGGAATCTTCTTCGATTCGAACGCACTTGAACACGCTGGTTTTCCCATTTATTTGTGCCTACAACTTCCCATCCTCGCCATAACCTCTTTATTCGCTGCATAGAGCAAAACAATTTAGTGGGTGTGAAGATCGGTGTAAGAAGAGACAAAATATTGTGCATTGGAGTCAAT
GGAGGAGCATAATATATCAGGCAGAGTCATATTGGTGGCCATAGACAAGAGCAAGGAGAGCTGTGATGCTCTCCAATGGGCTCTTAACAACCTGTTTACATCCCAGGATAGAATCATTCTCATTCATGCTCAGCGCCTTCCAGTTTCCTCTTTCTCAACTGGAAACCCAGGTTTCATGATGCCAGTAGATGTGCTCAAGA
TATTGGAAAACGATATCCAGAAGTCTACAGAGAAGATTTTCGCCATAGCAACTGAAATATGCAAAGCCAAAAATGTGACTCCGGAAACACATGCTCACAATGGAGATGCCAGGGAGGTCATCTGCGATGCTGCCAAAAAGTATAATTCTGACATGTTGGTGATTGGTAGTCATGCATACGGGGTTCTTAAGAGGGCAGTT
CTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTTATACTTGGCCTTCCTGCCTGATATGAAACAACAGATACTACATCTAATTGAAATATAGACTAGGGAATTTCAGA
AGTCATTCATAACAGATGAATATCTGTTTGTTATTTTCGTTTTATTTTAACTTTGAAAATATACTCTGTTTTATGTATGATTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTAT
GTATGGTTGTATAAAAATATTCAAGTATGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTGCGATGCTGCCAAAAAG
>TRINITY_DN100799_c0_g2_i4 from sample A4 / Example unspliced isoform:AAGACAGTAAACCCGCGGAAATGCAAGGCCGGAATCTTCTTCGATTCGAACGCACTTGAACACGCTGGTTTTCCCATTTATTTGTGCCTACAACTTCCCATCCTCGCCATAACCTCTTTATTCGCTGCATAGAGCAAAACAATTTAGTGGGTGTGAAGATCGGTGTAAGAAGAGACAAAATATTGTGCATTGGAGTCAAT
GGAGGAGCATAATATATCAGGCAGAGTCATATTGGTGGCCATAGACAAGAGCAAGGAGAGCTGTGATGCTCTCCAATGGGCTCTTAACAACCTGTTTACATCCCAGGATAGAATCATTCTCATTCATGCTCAGCGCCTTCCAGTTTCCTCTTTCTCAACTGGAAACCCAGGTTGATTTCTTCAGGCATTTTTCTCAGGCT
GTTATGGAGATTTGTAGGATGTAATTCACTGTAAAATCATACAAGGCTCTTGAGTTTATTAAGTGAAAGGATTTTAATCTTTTTCGACACATACAACAGTAGAATGGGCGTGTTCTGTTCGTTCATCTCAGAGCTTGTGATGGCATTTCATCTTGAAGTGTTTTATTCTTTTTTGGGATTGTTATAGAGGCCGAGTTCTG
ATTGCATTTCGGCGTGGCCAGGTTTCATGATGCCAGTAGATGTGCTCAAGATATTGGAAAACGATATCCAGAAGTCTACAGAGAAGATTTTCGCCATAGCAACTGAAATATGCAAAGCCAAAAATgtaagttaggtatactcatattgtgattggaattaaagaatttggtgtgaactagatcggagggttgattcaaaa
tttaatatagttttattttctttaatcattggctgactgtattgaatctttcctaaacatgctttcattacaaattgcgcggggagaaggaaggcccctggagctccatcttggcgcggggctccatcaacactctgtttgtggtataacagttcactgaatctacatggttgattgggtttatataatatagacattcg
gagagatctatttgaattttggtttttgtccatcaagaagatgaagatgttgttatcaggtttatgcgaagatgaggatcgttttgaatgtccatggatagtttaactctcttccaagtaattttcatcctcctaaacagatagataatctatagtaatttaacctccacaaatgccaactgctctttagattgccaagc
tggagttcacataagcttgagattaaatagatccattttcataggcttcttaattgagtgttgaaatccttcaattcatttgagaaaaaagtgcaattagaagccagtgcgaatttcagaatgtgagtggctaatattgagccttgatcttgatcttttctgtttcaaaatcaaaacccatctttcagcaagatactggt
tcaaattcaatttacggttaagtgcctttatgcttgttttggaattttttgatacatttaacttcaagcagattctatccattaaggtcttatctcattctagttaggactgcaaactttaataggaaggtccttcaatggatcagctccatattatcacttttatcaattttgcaaaatgtaattgtgaggtttattgc
catcactctattggttatgatattcatattttttttcttcttggaatatatatcagggggaaatctgcagggtagtttttctcgttttgaggatggtattcagggtaaaccagattctttaggattcaaagtcaatataacaatatggttatttaagatctcagaatcaacaatatgcttatttaagagctcaaaatctt
gagtgagtagggcaacaatcagtcctaattactcaaactacacccaagtcatgatattcatcctgtcattgtaagatctgagatattagtacactcttgctaataccaattcgaagaccacaatacacagtcttgagcacgcccatggcattctgcagcttttccggcttcttttcctctgtaattccataatggaaaac
cttagaagatttttccttctactgtcccagGTGACTCCGGAAACACATGCTCACAATGGAGATGCCAGGGAGGTCATCTGCGATGCTGCCAAAAAGTATAATTCTGACATGTTGGTGATTGGTAGTCATGCATACGGGGTTCTTAAGAGGGCAGTTCTTGGCAGTGTGAGTGACTATTGTGTCCACCATGTACAGTGCCC
TGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTTATACTTGGCCTTCCTGCCTGATATGAAACAACAGATACTACATCTAATTGAAATATAGACTAGGGAATTTCAGAAGTCATTCATAACAGATGAATATCTGTTTGTTATTTTCGTTTTA
TTTTAACTTTGAAAATATACTCTGTTTTATGTATGATTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGAGATGACTGGAACCAGAAAAATGAAATACTTTATGTATGGTTGTATAAAAATATTCAAGTATGTTCTTGGCAGTGTGA
GTGACTATTGTGTCCACCATGTACAGTGCCCTGTTGTTGTTGTGAAGCCCCAGAAGGTCGAGGCTCATTGATTTTCATTTGCCTCTTGCCACCTAAGTGCTCTGATTCATCTGCGATGCTGCCAAAAAG