sp|Q5IH14|SPP1_TOBAC ----> Sucrose-phosphatase 1
Intron 1 GTATGTTTGT ... TTGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.45 | 164 | 58 | 54 |
| A2 | 21.68 | 121 | 26 | 41 |
| A3 | 24.26 | 162.3 | 46 | 58 |
| A4 | 22.28 | 115.2 | 24 | 42 |
| A5 | 29.55 | 63.2 | 27 | 26 |
| A6 | 21.34 | 431.3 | 96 | 138 |
| A7 | 20.89 | 598.2 | 131 | 185 |
| A8 | 20.99 | 380.2 | 90 | 112 |
| A9 | 21.92 | 548.5 | 123 | 185 |
| A10 | 21.11 | 514 | 103 | 172 |
>TRINITY_DN115711_c0_g1_i2 from sample A1 / Example spliced isoformGTCAGATCTTGACAATACCATGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTC
TAGATTCCCTCAGCTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGG
CTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCAT
GAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTT
TAAAAGTGCAATTGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTG
AACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAG
GCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATT
TTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
>TRINITY_DN115711_c0_g1_i3 from sample A1 / Example unspliced isoform:TTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGgtatg
tttgttgttgccttatgcattagatattctttgagtttttccaacagttttgcaatttacagctattatcctgatagctgttaccagaacctttgctgtctgtgctacccttggttaattctcccatcgcgtgcataaatttgtcatctgtttctttgaccttgttctggcttgggttatttgatttttgaatgcagGTT
AGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGAT
TGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATTG
Intron 2 GTAATGCTTA ... TTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.35 | 225 | 6 | 54 |
| A2 | 19.09 | 178 | 1.5 | 42 |
| A3 | 16.67 | 200 | 0 | 40 |
| A4 | 23.2 | 192 | 0 | 58 |
| A5 | 21.17 | 74.5 | 1.5 | 20 |
| A6 | 16.95 | 936.3 | 1.5 | 191 |
| A7 | 18.82 | 901.5 | 0 | 209 |
| A8 | 17.89 | 982 | 1.5 | 214 |
| A9 | 16.63 | 807 | 0 | 161 |
| A10 | 14.5 | 607.5 | 1 | 103 |
>TRINITY_DN115711_c0_g1_i2 from sample A1 / Example spliced isoformGTCAGATCTTGACAATACCATGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTC
TAGATTCCCTCAGCTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGG
CTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCAT
GAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTT
TAAAAGTGCAATTGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTG
AACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAG
GCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATT
TTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
>TRINITY_DN115711_c0_g1_i10 from sample A1 / Example unspliced isoform:AACTTCTGTAATCTGTTTAACTGGCATCTAAATTATTGCTGTCCTGCCTCCTAATAATCTCATTTCTATTGAAACTACAGAACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGgtaatgcttagatgcgatcgttgaaagagtggtttgaaattttggatacattcttcagatccccaaacatgta
gattataaaattgactaatctggtgattctctttttggcagCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAGGCATCA
GAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTAC
TTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
Intron 3 GTGGATCATC ... TTCTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.33 | 70 | 506 | 378 |
| A2 | 84.16 | 89 | 545 | 401 |
| A3 | 88.38 | 69 | 640 | 410 |
| A4 | 84.91 | 71 | 473 | 326 |
| A5 | 87.97 | 38 | 360 | 196 |
| A6 | 87.08 | 181 | 1401 | 1039 |
| A7 | 89.09 | 226 | 2113 | 1577 |
| A8 | 87.42 | 102 | 838 | 579 |
| A9 | 86.75 | 242 | 1864 | 1304.3 |
| A10 | 88.96 | 218 | 2113 | 1400 |
>TRINITY_DN115711_c0_g1_i2 from sample A1 / Example spliced isoformGTCAGATCTTGACAATACCATGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTC
TAGATTCCCTCAGCTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGG
CTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCAT
GAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTT
TAAAAGTGCAATTGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTG
AACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAG
GCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATT
TTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
>TRINITY_DN115711_c0_g1_i1 from sample A1 / Example unspliced isoform:ACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGgtggatcatcaggatcctgagaacatatcgttgcttcggtttgatgcattatgggaagcagactacaggcatgattccctcttggttttctctacagG
AAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTC
AGGTAAAGCCTTTCGTGTCCAAGAAACTATGCAAATACTAAATAGGTAAGTGTTGTTGACAAGTGGATTGCAGAATTTACCTGATTACAGGCAAATCACATTTTATAGAAAAGAAAGGGAACACATTTAAAAATTAAGAATTTGGTAGATACAATGGGTTCTTGAGTGCCACAGCATTGTGTATGACTGGCAATGTGCTG
ATTTATGTTGACTCCTTGCAGGTAGAAACAGAGCAGCGACTCCACAAAGTTAGCTTTTATATTG
Intron 4 GTAAAGCCTT ... CTCCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.35 | 185 | 31 | 0.7 |
| A2 | 10.58 | 132.3 | 15.7 | 1 |
| A3 | 16.19 | 176 | 34 | 0 |
| A4 | 13.79 | 125 | 20 | 2.7 |
| A5 | 18.62 | 94.7 | 21.7 | 0 |
| A6 | 9.69 | 466 | 50 | 2 |
| A7 | 10.69 | 618 | 74 | 0 |
| A8 | 8.05 | 255 | 22.3 | 0 |
| A9 | 14.17 | 521 | 86 | 0 |
| A10 | 12.43 | 634 | 90 | 0 |
>TRINITY_DN115711_c0_g1_i5 from sample A1 / Example spliced isoformACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTTTCTCTACAGG
AAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTC
AGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGCTGAAGAAA
TTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTATGTTTGTTGTTGCCTTATGCATTAGATATTCTTTGAGTTTTTCCAACAGTTTTGCAATTTACAGCTATTATCCTGATAGCTGTTACCAGAACCTTTGC
TGTCTGTGCTACTTATCTTCTTTGAGTTTTTCCAACAGTTTTGCAATTTACAGCTATTATCCTGATAGCTGTTACCAGAACCTTTGCTGTCTGTGCTACCCTTGGTTAATTCTCCCATCGCGTGCATAAATTTGTCATCTGTTTCTTTGACCTTGTTCTGGCTTGGGTTATTTGATTTTTGAATGCAGGTTAGTAATGCA
CAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATT
CCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATTG
>TRINITY_DN115711_c0_g1_i1 from sample A1 / Example unspliced isoform:ACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTTTCTCTACAGG
AAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTC
AGgtaaagcctttcgtgtccaagaaactatgcaaatactaaataggtaagtgttgttgacaagtggattgcagaatttacctgattacaggcaaatcacattttatagaaaagaaagggaacacatttaaaaattaagaatttggtagatacaatgggttcttgagtgccacagcattgtgtatgactggcaatgtgctg
atttatgttgactccttgcagGTAGAAACAGAGCAGCGACTCCACAAAGTTAGCTTTTATATTG
Intron 5 GTGAGATCCA ... CTATCGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.62 | 284 | 51.4 | 83 |
| A2 | 22.18 | 200 | 28.6 | 57 |
| A3 | 21.97 | 238 | 39.2 | 67 |
| A4 | 19.5 | 194 | 31 | 47 |
| A5 | 21.43 | 132 | 27.4 | 36 |
| A6 | 20.49 | 524 | 94.6 | 135 |
| A7 | 21.45 | 769.2 | 140.4 | 210 |
| A8 | 23.16 | 408 | 61.4 | 123 |
| A9 | 20.61 | 685.6 | 112.8 | 178 |
| A10 | 19.52 | 664 | 109.6 | 161 |
>TRINITY_DN108907_c9_g2_i3 from sample A3 / Example spliced isoformGGGATAGGAAACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTT
TCTCTACAGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAG
CTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTT
GCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTG
CAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATT
GATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTGAACAAGAACGGCG
TTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAGGCATCAGAGGTTG
ATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTACTTGTGAA
ATATTTGTAAAAGATTATTGAGTTAATCTACCCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGTGTTGTTATCTTTAAATAAACATATAA
AGTAATAAATTTAT
>TRINITY_DN108907_c9_g2_i1 from sample A3 / Example unspliced isoform:GGGATAGGAAACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTT
TCTCTACAGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAG
CTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGgtgagatccatggactggatcatagtccaacccttttaggatgattattattttcataaagaacatttcagctgcatacagaatct
caaaagttagaactatcacctcaattggtatggaaagacaatccatggtggttgcacttatgagaaactccattggcactgtttattttggattagaatatggttaactgattaagttccttgcatgaaagtccaagcaaacagttcttttcataattgttagataatggcttaaaaatatgtttggagcttaatagtta
gtaagttcatctatcgacagTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGAT
GTCTATGGAGTCATGGTATGTTTGTTGTTGCCTTATGCATTAGATATTCTTTGAGTTTTTCCAACAGTTTTGCAATTTACAGCTATTATCCTGATAGCTGTTACCAGAACCTTTGCTGTCTGTGCTACTTATCTTCTTTGAGTTTTTCCAACAGTTTTGCAATTTACAGCTATTATCCTGATAGCTGTTACCAGAACCTT
TGCTGTCTGTGCTACTCTTGGTTAATTCTCCCATCGCGTGCATAAATTTGTCATCTGTTTCTTTGACCTTGTTCTGGCTTGGG
Intron 6 GTGTCTGTTT ... GCAGGATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.16 | 506 | 12 | 51 |
| A2 | 8.4 | 545 | 13.2 | 50 |
| A3 | 9.99 | 640 | 12 | 71 |
| A4 | 13.69 | 473 | 17 | 75 |
| A5 | 9.55 | 360 | 5 | 38 |
| A6 | 11.66 | 1401 | 35 | 185 |
| A7 | 11.55 | 2113 | 46 | 276 |
| A8 | 10.37 | 838 | 14 | 97 |
| A9 | 10.43 | 1864 | 29 | 217 |
| A10 | 10.09 | 2113 | 50 | 237 |
>TRINITY_DN40134_c0_g1_i3 from sample A6 / Example spliced isoformGGGATAGGAAACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTT
TCTCTACAGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAG
CTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTT
GCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTG
CAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATT
GATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTGAACAAGAACGGCG
TTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTACGAGCTGACATGCCATGATGGAGCAAGGCATCAGAGGTTG
ATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTACTTGTGAA
ATATTTGTAAAAGATTATTGAGTTAATCTACCCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAACTGAATTACACAAGTCAATTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGTGTTGTCATCTTTAAATAAACATATGA
AGTAATAAATTTATACTGGTC
>TRINITY_DN40134_c0_g1_i1 from sample A6 / Example unspliced isoform:GGGATAGGAAACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGgtgtctgtttgtttttgatcatgaggccagccctttgtctaccttttgttctatgtggcaggatgagGTGGATCATCAGGATCCTGAG
AACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTTTCTCTACAGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTG
GGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATAT
ATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTA
TTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTG
TGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATTGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCAT
CGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTGAACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGC
TGCTAGACAGTACTCAAGCTCTGGTTACGAGCTGACATGCCATGATGGAGCAAGGCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAA
GATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACCCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAACTGAATTACACAAGT
CAATTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGTGTTGTCATCTTTAAATAAACATATGAAGTAATAAATTTATACTGGTC
Intron 7 GTAAGAAAAT ... GAAACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.05 | 258 | 0 | 73 |
| A2 | 24.09 | 230 | 0 | 73 |
| A3 | 17.9 | 289 | 1 | 63 |
| A4 | 17.05 | 219 | 0 | 45 |
| A5 | 22.41 | 90 | 0 | 26 |
| A6 | 18.69 | 1279 | 1 | 294 |
| A7 | 17.42 | 1304.3 | 1 | 275 |
| A8 | 16.88 | 1338.7 | 2 | 272 |
| A9 | 17.43 | 1260 | 0 | 266 |
| A10 | 17.54 | 992 | 0 | 211 |
>TRINITY_DN40227_c0_g1_i7 from sample A9 / Example spliced isoformGATAGGAAACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTTTC
TCTACAGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCT
TAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGC
TGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTGCA
GGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATTGA
TCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTGAACAAGAACGGCGTT
GCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAGGCATCAGAGGTTGAT
GTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTACTTGTGAAAT
ATTTGTAAAAGATTATTGAGTTAATCTACCCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGTGTTGTTATCTTTAAATAAACATATAAAG
TAATAAATTTATACTGGCA
>TRINITY_DN40227_c0_g1_i6 from sample A9 / Example unspliced isoform:GTTTGATAAGTGGGAACTGATTGgtaagaaaatgcatgttgctctttcctagtgatttccaatgaaatataattttcatttattcaacttcagaagccttcacattaaatattttatggatgatgtaattattgtcgtatattcttatctgttttcctttttctcaaacaatggtgacaagggaaaatcaacttctgtaa
tctgtttaactggcatctaaattattgctgtcctgcctcctaataatctcatttctattgaaactacagAACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGT
TCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAGGCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAA
ACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACCCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAA
GTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGTGTTGTTATCTTTAAATAAACATATAAAGTAATAAATTTATACTGGCA
Intron 8 GTAAGGTTTA ... TGCCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.18 | 238 | 40 | 33 |
| A2 | 11.43 | 124 | 15.7 | 16 |
| A3 | 15 | 153 | 21.4 | 27 |
| A4 | 9.93 | 136 | 25 | 15 |
| A5 | 19.77 | 69 | 14.3 | 17 |
| A6 | 10.88 | 647 | 100.6 | 79 |
| A7 | 11.28 | 700 | 116.7 | 89 |
| A8 | 11.51 | 661 | 96 | 86 |
| A9 | 9.8 | 598 | 95.9 | 65 |
| A10 | 12.96 | 477 | 77.1 | 71 |
>TRINITY_DN115711_c0_g1_i2 from sample A1 / Example spliced isoformGTCAGATCTTGACAATACCATGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTC
TAGATTCCCTCAGCTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGG
CTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCAT
GAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTT
TAAAAGTGCAATTGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTG
AACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAG
GCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATT
TTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
>TRINITY_DN115711_c0_g1_i9 from sample A1 / Example unspliced isoform:ACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTTTCTCTACAGG
AAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTC
AGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGCTGAAGAAA
TTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTGCAGGCATCAT
ACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATTgtaaggttta
atatcattgttggtgttttgtcatttgatctgctaattttgatttgatatcattgatggtgtttgtcatttgctctgctaatgtgagtggtctcccctcaaacatcttaataaagcttcctctagctaagtcgagtaaatatggacaacaaattaaaatgcaagatgaggaactataatgttcatagtaaaaatttaaaa
ctcttttcttgttcggaagaagcatgcaaaatgatcatttgatctgcagagatttaattaatgtggagcacctttattgcagtatttgcctcatcattgaaaattgcctggcagGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGA
CCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTGAACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTG
ATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAGGCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTA
TAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATTTTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCG
GTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
Intron 9 GTATGTTTGT ... TTGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.45 | 164 | 58 | 54 |
| A2 | 21.68 | 121 | 26 | 41 |
| A3 | 24.02 | 162.3 | 44.7 | 58 |
| A4 | 21.74 | 115.2 | 22 | 42 |
| A5 | 29.29 | 63.2 | 26.3 | 26 |
| A6 | 21.19 | 431.3 | 94 | 138 |
| A7 | 20.75 | 598.2 | 128.3 | 185 |
| A8 | 20.94 | 380.2 | 89.3 | 112 |
| A9 | 21.81 | 548.5 | 121 | 185 |
| A10 | 21.11 | 514 | 103 | 172 |
>TRINITY_DN115711_c0_g1_i2 from sample A1 / Example spliced isoformGTCAGATCTTGACAATACCATGGAAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTC
TAGATTCCCTCAGCTTAAGTTTCAGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGG
CTTTAGCGTATTTGCTGAAGAAATTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGGTTAGTAATGCACAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCAT
GAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTT
TAAAAGTGCAATTGATCCTAACTGTAGCTTGTTGCATCCATGGGGGGTTGAAGAAAATCTTTTCATAGGCATTGATGTTCTGAGACAATGTTATGGAGACCAGAAAGGAAAGCAATTTCGTATTTGGATTGATAAAATTCGTCCATCGAAAATCTCTTCAGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTG
AACAAGAACGGCGTTGCTACTGCACGACTGCTTTACTCAAAGTGAAGCATGATGCTCCAAATTCATTGTCATGGATTCATATTCATGAAACATGGCTTGATGGACGTGGAAACAGAACTAATCTGTGTTGTTCAATCTAAAGAAGCTGCTAGACAGTACTCAAGCTCTGGTTCCGAGCTGACATGCCATGATGGAGCAAG
GCATCAGAGGTTGATGTTTTGGTACATTTAGATTTATACCTAAACATTTGAAGAATCCTTTCCATCTCCCCTTATGCAATTATTTACGTGCCGCATCTATAGGCAATAAATGTTTTTCCGCGGTTTAGTAAACACTATATCTTGAAGATTAAACCCCCAGCAATAAGAACTCTTTGCTGCCAATCTTTTATGACTAAATT
TTTTACTTGTGAAATATTTGTAAAAGATTATTGAGTTAATCTACTCAACTCACTGAATGTTTACTTGTGGGCTAATATGGATTTGTGTGTGGGTGTGCGGTCCCACACTAATATTTTTCCAATGAACTCAAGTGAATTACACAAGTCAGTTTCTCATACGAGCTTCCGCTCCGTACATTTACAAGGT
>TRINITY_DN115711_c0_g1_i5 from sample A1 / Example unspliced isoform:ACCGGGGAGAAAAATTGCGTTACATTACAGCAGCAGAGCATGGAGGGAATGAAGGGATCTCCGCCGCGTCTGATGATCGTGTCAGATCTTGACAATACCATGGTGGATCATCAGGATCCTGAGAACATATCGTTGCTTCGGTTTGATGCATTATGGGAAGCAGACTACAGGCATGATTCCCTCTTGGTTTTCTCTACAGG
AAGATCTCCAACATTGTACAGAGAGCTGAGAAAGGAGAAACCTTTGCTGACCCCAGACATTACCATAATGTCTGTTGGAACAGAAATAACATATGGAGAATCGATGACCCCTGATAAAGGCTGGGAGGAAGTGCTGAATGAAGGGTGGGACAGAGCCATTGTGGTGGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTC
AGGTAGAAACAGAGCAGCGACCCCACAAAGTTAGCTTTTATATTGAGAAAACAAAGTCTTCAGAAGTGATTAATGATCTTTCTAAACGGTTAGAAGAGTGTCAGTTGAATGTCAAAATCATATATAGTGGAGGCATCGATCTGGATATACTGCCACAAGGTGCTGGCAAAGGACAGGCTTTAGCGTATTTGCTGAAGAAA
TTCAATTCCGAGGGTAAATCACCCGAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAACTGTTCAGCATTGCAGATGTCTATGGAGTCATGgtatgtttgttgttgccttatgcattagatattctttgagtttttccaacagttttgcaatttacagctattatcctgatagctgttaccagaacctttgc
tgtctgtgctacttatcttctttgagtttttccaacagttttgcaatttacagctattatcctgatagctgttaccagaacctttgctgtctgtgctacccttggttaattctcccatcgcgtgcataaatttgtcatctgtttctttgaccttgttctggcttgggttatttgatttttgaatgcagGTTAGTAATGCA
CAAGAAGAGTTATTGCAATGGTATGAAGAAAATGCCAAGGGCAATTCTAAAGTTATCCTTGCTCATGAGAGATGTGCTGCAGGCATCATACAAGCCATGCAACACTTCAATCTAGACCCCAATGTTTCCCCTCGAGATATTCTAGGGCTCTCTCAAACTGAGCCAAAATATTTTTCACTTGGTCATGAGATTGTGGAATT
CCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGTTTTAAAAGTGCAATTG