sp|A3BDI8|SAP8_ORYSJ ----> Zinc finger A20 and AN1 domain-containing stress-associated protein 8
Intron 1 GTAAGTCCAG ... ATCCTCGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.78 | 442 | 495 | 9 |
| A2 | 52.99 | 535 | 604.3 | 4 |
| A3 | 53.52 | 679 | 783.3 | 5 |
| A4 | 52.08 | 419 | 456.7 | 11 |
| A5 | 53.35 | 499.3 | 571.7 | 3 |
| A6 | 51.64 | 4977.3 | 5328 | 19 |
| A7 | 52.73 | 4257.7 | 4757.3 | 14 |
| A8 | 52.26 | 2500.7 | 2742.7 | 11 |
| A9 | 52.11 | 4087.3 | 4457 | 14 |
| A10 | 52.7 | 3434 | 3834 | 19 |
>TRINITY_DN43902_c1_g6_i4 from sample A6 / Example spliced isoformATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTC
CTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTCAGTATTCTGGATTGTTC
TGCCGGAACGGATCTGTGTGTGGAAAGCGTAAAAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAAGTAAGCGCCCAAACTTTGAATGGATCTTTAAATTTTTAAAGGAAAATACAAAGAAAATTTCCAGAAAAATATGGCTTTCTGGTAATTTGAAGTTTTAGGATAGAAAATAGGCTGCCTGTTCTTAATTTC
TAGGTGTATTTCAAGGCTTGAGCTTCTAATTTACGAAGGCCGGTTGCAGTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCG
CCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATT
TCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGA
TTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGT
GTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAA
ATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGT
TTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGT
TTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACCTCGGACTAAAGTGGTG
>TRINITY_DN43902_c1_g6_i1 from sample A6 / Example unspliced isoform:ATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTC
CTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTgtaagtccagaaaattcc
gatccgattgtttgttttccctggcatggaattattgtttgaacagagtaattttgtatcctagggttaaatatttgttaataaatatggttctttagaagatttgtgaaagatcatcattttcttggataaattgtttgaaatttctgttatcttcgagatcctcgaagCAGTATTCTGGATTGTTCTGCCGGAACGGA
TCTGTGTGTGGAAAGCGTAAAAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAAGTAAGCGCCCAAACTTTGAATGGATCTTTAAATTTTTAAAGGAAAATACAAAGAAAATTTCCAGAAAAATATGGCTTTCTGGTAATTTGAAGTTTTAGGATAGAAAATAGGCTGCCTGTTCTTAATTTCTAGGTGTATTTC
AAGGCTTGAGCTTCTAATTTACGAAGGCCGGTTGCAGTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCG
GCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCA
GCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGC
CGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTT
CTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTAT
GCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACA
TAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGT
CAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACCTCGGACTAAAGTGGTG
Intron 2 GTGAGCGCAG ... TCGTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.36 | 430 | 46 | 454 |
| A2 | 51.06 | 555 | 68 | 579 |
| A3 | 50.76 | 715 | 67 | 737 |
| A4 | 51.89 | 432 | 43 | 466 |
| A5 | 51.27 | 481 | 35 | 506 |
| A6 | 51.09 | 4702 | 252 | 4912 |
| A7 | 50.92 | 4037 | 329 | 4188 |
| A8 | 50.83 | 2342 | 213 | 2421 |
| A9 | 50.66 | 3945 | 429 | 4050 |
| A10 | 50.88 | 3199 | 384 | 3313 |
>TRINITY_DN43436_c0_g2_i10 from sample A7 / Example spliced isoformGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAA
CTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGC
CAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTT
CTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGAT
TTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTG
TCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAA
TTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTT
TCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTT
TTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACC
>TRINITY_DN43436_c0_g2_i7 from sample A7 / Example unspliced isoform:GCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGgtgagcgcagcagcggttccttgagtgaaaagaaaaaagaattacggtaacctaacagtcctggaaagatgt
cgcgattagagtaggtgggcgtgccactttggtaaccgactttatttgtcatttcgtgctttttattaaataaaaaaagataagcatccggaatcttcttcctaattacttgcttttttcaattaaatctcattataatgcgttttcttgaacggcacctttcccattctttgccgtgttcggttcgtattcagGGTTTC
GGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCA
AGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTC
CGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAA
TGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACC
GGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGG
TTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAAT
CCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATT
ACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACC
Intron 3 GTAAGTCCAG ... TATCTTCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.97 | 576 | 531 | 9 |
| A2 | 47.82 | 706 | 647 | 4 |
| A3 | 47.4 | 929 | 837 | 5 |
| A4 | 48.44 | 520 | 488.7 | 8 |
| A5 | 49.06 | 632 | 608.7 | 3 |
| A6 | 47.23 | 6363 | 5696 | 17 |
| A7 | 47.4 | 5629 | 5071.7 | 14 |
| A8 | 47.41 | 3246 | 2925.7 | 11 |
| A9 | 47.77 | 5182.7 | 4739.3 | 13 |
| A10 | 47.3 | 4557 | 4090.3 | 21 |
>TRINITY_DN43902_c1_g6_i6 from sample A6 / Example spliced isoformATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTC
CTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTATCCTCGAAGCAGTATTC
TGGATTGTTCTGCCGGAACGGATCTGTGTGTGGAAAGCGTAAAAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAATTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGG
TTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAG
ATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCAC
CGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCA
CACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGA
AGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGC
CATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTG
TTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACCTCGGACTAAAGTGGTG
>TRINITY_DN43902_c1_g6_i1 from sample A6 / Example unspliced isoform:ATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTC
CTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTgtaagtccagaaaattcc
gatccgattgtttgttttccctggcatggaattattgtttgaacagagtaattttgtatcctagggttaaatatttgttaataaatatggttctttagaagatttgtgaaagatcatcattttcttggataaattgtttgaaatttctgttatcttcgagATCCTCGAAGCAGTATTCTGGATTGTTCTGCCGGAACGGA
TCTGTGTGTGGAAAGCGTAAAAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAAGTAAGCGCCCAAACTTTGAATGGATCTTTAAATTTTTAAAGGAAAATACAAAGAAAATTTCCAGAAAAATATGGCTTTCTGGTAATTTGAAGTTTTAGGATAGAAAATAGGCTGCCTGTTCTTAATTTCTAGGTGTATTTC
AAGGCTTGAGCTTCTAATTTACGAAGGCCGGTTGCAGTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCG
GCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCA
GCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGC
CGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTT
CTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTAT
GCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACA
TAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGT
CAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACCTCGGACTAAAGTGGTG
Intron 4 GTAAGCGCCC ... CCGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.94 | 442.3 | 8.2 | 389.7 |
| A2 | 45.32 | 477 | 3.8 | 427.3 |
| A3 | 45.3 | 630.5 | 5.9 | 564.7 |
| A4 | 45.5 | 402.2 | 13.5 | 363.1 |
| A5 | 45.01 | 402.2 | 2.8 | 355.7 |
| A6 | 45.09 | 3749.3 | 31.9 | 3324.6 |
| A7 | 44.88 | 3262.5 | 20.8 | 2868.5 |
| A8 | 44.97 | 2137.7 | 10.2 | 1886.6 |
| A9 | 45.14 | 2711.7 | 14.5 | 2411.1 |
| A10 | 45.43 | 2903 | 16.8 | 2613.6 |
>TRINITY_DN104878_c0_g2_i3 from sample A2 / Example spliced isoformGCCGGAACGGATCTGTGTGTGGAAAGCGTAATAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAATTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTC
CGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTT
GAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGA
GAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTC
ATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAG
GGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACT
GCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGAC
>TRINITY_DN104878_c0_g2_i2 from sample A2 / Example unspliced isoform:GCCGGAACGGATCTGTGTGTGGAAAGCGTAATAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAAgtaagcgcccaaactttgaatggatctttaaatttttaaaggaaaatacaaagaaaatttccagaaaaatatggctttctggtaatttgaagttttaggatagaaaataggctgcctgttcttaatttct
aggtgtatttcaaggcttgagcttctaatttacgaaggccggttgcagTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGC
CAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTT
CTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGAT
TTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTG
TCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAA
TTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTT
TCGGTGGTACATAAATTTGCATCTCAGGAC
Intron 5 GTGAGCGCAG ... ATTAGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.43 | 395.6 | 60 | 489.2 |
| A2 | 55.18 | 512 | 87 | 627.2 |
| A3 | 54.29 | 661.2 | 87 | 781.6 |
| A4 | 54.41 | 402 | 53 | 477.6 |
| A5 | 55.09 | 444.2 | 47 | 542.2 |
| A6 | 53.98 | 4340 | 317 | 5063.4 |
| A7 | 54.96 | 3719.2 | 408 | 4514.8 |
| A8 | 55.03 | 2155.6 | 260 | 2622.8 |
| A9 | 55.09 | 3665 | 523 | 4476.6 |
| A10 | 56.06 | 2935.8 | 501 | 3723.6 |
>TRINITY_DN43436_c0_g2_i10 from sample A7 / Example spliced isoformGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAA
CTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGC
CAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTT
CTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGAT
TTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTG
TCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAA
TTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTT
TCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTT
TTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACC
>TRINITY_DN43436_c0_g2_i6 from sample A7 / Example unspliced isoform:GCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGgtgagcgcagcagcggttccttgagtgaaaagaaaaaagaattacggtaacctaacagtcctggaaagatgt
cgcgattagagtagGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTT
CGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAA
ATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAG
TCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGG
CCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTGAGATCCACGATGATGATTGTCACGGGAGTTGGAAATTGACTAGATATGACATCTGAA
GGCTTTTTGCATCAGTGCAGCTTGCATGCCAAGAGCATATGATTGAAATTGTGAAATTTGAAATCAAAACAAGGATATTAGTGAGCATAGAAGTCTGTGTTCTACATCAGTTGGGAAGAAATATACCAAAGTTGTTCAAATTTTAAAGAATGGTGAATCTGTTGAATGAATCCCATCAACTTCTTACGATAAGAGAGCCA
CAATATTTTTTATTTATGGAAGGGATCAATTAATATCAGCATAGATCCATCTTAAAAGGGGATCTACCAAGCGCCAAGAGGGATCAAATCTCTTGAGATGCAAAC
Intron 6 GTAACCTAAC ... TCGTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.84 | 439 | 45 | 454 |
| A2 | 49.96 | 580 | 64 | 579 |
| A3 | 49.76 | 744 | 66 | 737 |
| A4 | 51.1 | 446 | 43 | 466 |
| A5 | 50.55 | 495 | 35 | 506 |
| A6 | 50.49 | 4817 | 250 | 4912 |
| A7 | 50.32 | 4135 | 316 | 4188 |
| A8 | 50.41 | 2382 | 209 | 2421 |
| A9 | 49.83 | 4078 | 424 | 4050 |
| A10 | 49.77 | 3343 | 382 | 3313 |
>TRINITY_DN47903_c0_g5_i5 from sample A10 / Example spliced isoformCTCACGACCGTCCGAATAATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAAT
TACGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAA
GAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCT
GCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAAC
CGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATC
ATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCT
TTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTT
ATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGT
TAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAG
>TRINITY_DN47903_c0_g5_i3 from sample A10 / Example unspliced isoform:CTCACGACCGTCCGAATAATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAAT
TACGgtaacctaacagtcctggaaagatgtcgcgattagagtaggtgggcgtgccactttggtaaccgactttatttgtcatttcgtgctttttattaaataaaaaaagataagcatccggaatcttcttcctaattacttgcttttttcaattaaatctcattataatgcgttttcttgaacggcacctttcccattct
ttgccgtgttcggttcgtattcagGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAG
GTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCG
CCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGC
AGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATT
CGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCT
CTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAA
ATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTG
TATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAG
Intron 7 GTAAGTCCAG ... CCGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.55 | 1876.2 | 425.1 | 403.8 |
| A2 | 15.97 | 2307 | 518.9 | 442.8 |
| A3 | 16.14 | 3009.3 | 672.6 | 585.2 |
| A4 | 16.97 | 1820.5 | 392 | 376.3 |
| A5 | 16.05 | 1908.4 | 492.1 | 368.6 |
| A6 | 14.74 | 19742 | 4570.9 | 3445.2 |
| A7 | 14.16 | 17867.2 | 4080.2 | 2972.7 |
| A8 | 15.63 | 10448.6 | 2352.9 | 1955.2 |
| A9 | 13.93 | 15307.8 | 3820.6 | 2498.7 |
| A10 | 15.12 | 15064.3 | 3287.7 | 2708.6 |
>TRINITY_DN98727_c0_g1_i1 from sample A3 / Example spliced isoformCTTGAACGGCACCTTTCCCATTCTTTGCCGTGTTCGGTTCGTATTCAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGG
AAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGG
CACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAG
ACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGA
TTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAG
GTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGG
CTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACA
AGAA
>TRINITY_DN98727_c0_g1_i3 from sample A3 / Example unspliced isoform:CTTGAACGGCACCTTTCCCATTCTTTGCCGTGTTCGGTTCGTATTCAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTgtaagtccagaaaattccgatccgattgtttg
ttttccctggcatggaattattgtttgaacagagtaattttgtatcctagggttaaatatttgttaataaatatggttctttagaagatttgtgaaagatcatcattttcttggataaattgtttgaaatttctgttatcttcgagatcctcgaagcagtattctggattgttctgccggaacggatctgtgtgtggaaa
gcgtaataaacgcttgaaatttatcttctgcaagataagtttcaagtaagcgcccaaactttgaatggatctttaaatttttaaaggaaaatacaaagaaaatttccagaaaaatatggctttctggtaatttgaagttttaggatagaaaataggctgcctgttcttaatttctaggtgtatttcaaggcttgagcttc
taatttacgaaggccggttgcagTTTATCTATTTTGAAGGAAATTT
Intron 8 GTAAGTCCAG ... CTCGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.14 | 596 | 531.5 | 8 |
| A2 | 47.01 | 730 | 647.5 | 4 |
| A3 | 47.02 | 944 | 838 | 4 |
| A4 | 47.62 | 538 | 489 | 11 |
| A5 | 48.7 | 642 | 609.5 | 3 |
| A6 | 46.34 | 6603 | 5701 | 20 |
| A7 | 46.84 | 5760 | 5075.5 | 14 |
| A8 | 46.89 | 3317 | 2929 | 10 |
| A9 | 46.98 | 5351.5 | 4742.5 | 13 |
| A10 | 46.6 | 4690 | 4093.5 | 19 |
>TRINITY_DN98727_c0_g1_i2 from sample A3 / Example spliced isoformGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACGGTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGGGTTTCGGGAGCTGCTCG
TGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTATTCTGGATTGTTCTGCCGGAACGGATCTGTGTGTGGAAAGCGTAATAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAATTTATCTATTTT
GAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAG
GGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTT
TTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAG
ATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTT
AAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATA
TTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTG
AAGAAGTTACTTTTTAAACAAGAA
>TRINITY_DN98727_c0_g1_i3 from sample A3 / Example unspliced isoform:CTTGAACGGCACCTTTCCCATTCTTTGCCGTGTTCGGTTCGTATTCAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTgtaagtccagaaaattccgatccgattgtttg
ttttccctggcatggaattattgtttgaacagagtaattttgtatcctagggttaaatatttgttaataaatatggttctttagaagatttgtgaaagatcatcattttcttggataaattgtttgaaatttctgttatcttcgagatcctcgaagcagTATTCTGGATTGTTCTGCCGGAACGGATCTGTGTGTGGAAA
GCGTAATAAACGCTTGAAATTTATCTTCTGCAAGATAAGTTTCAAGTAAGCGCCCAAACTTTGAATGGATCTTTAAATTTTTAAAGGAAAATACAAAGAAAATTTCCAGAAAAATATGGCTTTCTGGTAATTTGAAGTTTTAGGATAGAAAATAGGCTGCCTGTTCTTAATTTCTAGGTGTATTTCAAGGCTTGAGCTTC
TAATTTACGAAGGCCGGTTGCAGTTTATCTATTTTGAAGGAAATTT
Intron 9 GTAACCTAAC ... ATTAGAGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.8 | 439 | 72 | 491 |
| A2 | 52.03 | 580 | 100 | 629 |
| A3 | 51.31 | 744 | 97 | 784 |
| A4 | 51.84 | 446 | 61 | 480 |
| A5 | 52.36 | 495 | 60 | 544 |
| A6 | 51.35 | 4817 | 426 | 5085 |
| A7 | 52.27 | 4135 | 554 | 4528 |
| A8 | 52.56 | 2382 | 335 | 2639 |
| A9 | 52.41 | 4078 | 687 | 4491 |
| A10 | 52.8 | 3343 | 642 | 3739 |
>TRINITY_DN47903_c0_g5_i5 from sample A10 / Example spliced isoformCTCACGACCGTCCGAATAATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAAT
TACGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAA
GAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCT
GCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAAC
CGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATC
ATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCT
TTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTT
ATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGT
TAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAG
>TRINITY_DN47903_c0_g5_i1 from sample A10 / Example unspliced isoform:CTCACGACCGTCCGAATAATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAAT
TACGgtaacctaacagtcctggaaagatgtcgcgattagagtagGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGA
GAAGAATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACA
AGCCTCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTCGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCC
CTAATCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTT
ACATCCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTG
AGGTTATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAA
TTGTTACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAA
TTTGCGTTTCAGGATTTTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAG
Intron 10 GTGGGCGTGC ... TCGTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.04 | 491 | 23 | 454 |
| A2 | 47.93 | 628.8 | 30 | 578.8 |
| A3 | 48.47 | 783.9 | 25 | 737.4 |
| A4 | 49.25 | 479.7 | 28 | 465.6 |
| A5 | 48.2 | 543.7 | 23 | 506 |
| A6 | 49.12 | 5085.2 | 147 | 4910.7 |
| A7 | 48.05 | 4528.1 | 212 | 4187.8 |
| A8 | 47.84 | 2638.2 | 137 | 2419.7 |
| A9 | 47.42 | 4490.5 | 249 | 4049.1 |
| A10 | 46.97 | 3739.2 | 246 | 3311.5 |
>TRINITY_DN114287_c0_g1_i3 from sample A1 / Example spliced isoformCGACCGTCCGAATAATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACG
GTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAG
AATAAAAAGAAGTCAGGTTATTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCC
TCCTCTGCAATGGCCGCCGTTGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTTGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAA
TCGGTGTTTCTCGTGCAGGAAACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACAT
CCTTTCAAATTCTATTCGATAAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGT
TATGGTTGATGATGCTCTGTATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGT
TACCGAAAAAACTGAAATAAATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTG
CGTTTCAGGATTGTTGTATTTTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACCTCGGAC
>TRINITY_DN114287_c0_g1_i2 from sample A1 / Example unspliced isoform:CGACCGTCCGAATAATAAAAGGCGGGGCGCAAGTGGGAATAAATAATCCATCTCAATGGTCAGATATAAGCCACGGGATTTCATTCCATGACTGAATTCGTGCGAGGAAGGTGGATCGAAAATCGATGAGCGTGGGCTGATTTCAGAAAAAACGGTGAGCGCAGCAGCGGTTCCTTGAGTGAAAAGAAAAAAGAATTACG
GTAACCTAACAGTCCTGGAAAGATGTCGCGATTAGAGTAGgtgggcgtgccactttggtaaccgactttatttgtcatttcgtgctttttattaaataaaaaaagataagcatccggaatcttcttcctaattacttgcttttttcaattaaatctcattataatgcgttttcttgaacggcacctttcccattctttgc
cgtgttcggttcgtattcagGGTTTCGGGAGCTGCTCGTGTTGTGCAGGTCAGGGCATTACAGGCCTTGGTTAGGCAAGATTTGGAAGCAAACTCTCGGAGCCTCGAGGAATCGGCGCAAATTTCACCGGGCTTCTTTCTTTTATCTATTTTGAAGGAAATTTGAGGCGTGGAAGAGAAGAATAAAAAGAAGTCAGGTTA
TTTCTTCGGGCTTAAAGAATGGATCAAGAGAACTGGAACATAGGTGCTGACGGTACTGGTTGCCAGGCTCCGGAAGGGCATACTCTCTGCGCCAACAACTGCGGCTTTTTTGGGAGTTCGGCAACAAGAAACCTGTGTTCCAAGTGTTACAGGGATCTAATTATGAAGGAGGCACAAGCCTCCTCTGCAATGGCCGCCGT
TGAGAAATCATTTGCTGCAGGTTCTCCGATAGAGGAGGAAGCCCTCCTTTCCAGGCCAGATGCTATCGTTGAGCAAAGCCGTTCACAGATTTCTGTAGCCGCAGCCGGAGCCGTCTCAGTCCAGCTGGCCGCTTTGGCTTCATCATCTTCTTTTCCGCAGCCTCCTGCCGAGACCCCTAATCGGTGTTTCTCGTGCAGGA
AACGAGTCGGTCTAACCGGCTTCAAATGTCGCTGCGGGAATACTTTCTGCGGCCTTCACCGATATGCCGAGAAACACAGCTGCTCTTTCGATTTCAAGACCGCCGGTCGTGAGGCTATTGCTAAGGCCAACCCTGTCGTCAAAGCTGCCAAGATTGACAAACTTTGATTGGATTTTACATCCTTTCAAATTCTATTCGAT
AAAAGGCCACGACATCATGAAGCACCGGATCGGGTGGAGTTCGGCTGGTCGAATCGCCACACCCCTTTTCATTAGTACTTGGCTTTTCAGTGTCTTTTGGTTTCTTTTAATGACAGAATGCTGCTCTCTGCATCAAAGTTATGAAGGTATTTAAATCTCGACACTGTTTCAGGTTGAGGTTATGGTTGATGATGCTCTGT
ATAGTTGCAGGACCCTTTCAGACGGGTTTAGTTCTTTCTATCCTTCTGCCATAAAAGGAAGGCCTTTCAGGGCTCAAAACCCGATTATTAAATTCAGAAGTATGCTGTCTTATAAAAAAGGCTTTTTATGGATTAGAATGTCGTAGCAGATATTAGAACGTTCGTGGTTTGGCTAATTGTTACCGAAAAAACTGAAATAA
ATTGATACCATAGTTTATAAAACAATCCTTTTTATCTGATAGACCATGCTTGTCATAGCCATTTCTTACTGCTTGCAAGTAAGGTGGCTGTTTCGGTGGTACATAAATTTGCATCTCAGGATATTTATTTCCAGTCCATGTTTGTTTTGGTGAAGAAGTTACTTTTTAAACAAGAATTTGCGTTTCAGGATTGTTGTATT
TTGAATCTAGGTATGTTAAAGCAATTACTTCTTAAACAGGAAAGTCGTTCTTCGTTTTGTTCAGATGACTATGTCAATACATGATGAATGTTTTGAGTGGAGTCAATGTTCTATTCCTTCCACGTGGAAATACATAATATTAAATTCTGTGCAGACAAAAACCTCGGAC