NA ----> NA
Intron 1 GTAAGTGCAC ... AATTGTGCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 1 |
| A2 | 100 | 0 | 6 | 7 |
| A3 | 25 | 6 | 1 | 3 |
| A4 | 50 | 2 | 1 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 38.46 | 4 | 3 | 2 |
| A7 | 66.67 | 3 | 6 | 6 |
| A8 | 40 | 6 | 2 | 6 |
| A9 | 42.86 | 8 | 4 | 8 |
| A10 | 38.46 | 4 | 1 | 4 |
>TRINITY_DN42427_c1_g1_i1 from sample A9 / Example spliced isoformCAGGCTACTTTGTTGAGCTCTTGGGGCTCCCCTTTCATCACAGATACTTATCTGTGGGATGAACTATTTTATTTTAGATCGGCACTTCTGTCAAACAAAATAGAGCTGATTCCCGGATCAAAGCAACAGCATAATTTAAATACTAATTCCACGGGTGCCGCCAACGAGAAAGATTGGAGGGTAAAAAATTTACTGAAACG
ATCTTATCTCAAATACTGGCTAAGGGGCATAGACATTAGTGGGCTTAAGGCTAATACTCAAACCCTTGGAGATGATAGTAGTTCTGAGGCAAGCAAACCAAAGGATGCCATGGACTTTGCCAGATTAAAGGTTGAGAATGCTTCTCTTCAGGAAAGCATGGCAAACATGGAACATTTGACAACATCTATCCATCGACTTC
GGCTAGCTCTTCTCAAAGTAAAAGAAGACACACAATTTTCAGCCGCTGGTGAAGGTGCTTTAGAAGTAATTAATGGCATAATCAATGAGGCTCGGCATATTAAGACAGCACTTGGCAGCTCTCTTCCTGTTAGTTGGTCAGCAGACAGCACTTCAGATCTACCCGACTCTTCAGATTCAGAGATTGCCCCTGACAATGAA
GATCATACAATTACTGGACTAGACAGTGTTTCAGCTGCTGGGATTGAGCTTGTAGAACTTTTGATCTTCGCTGCCGATCTACAGAAAATAGAGCTTATGCAGACGTCCAAACATGCCGTGCTTCTTGAGAATGGCCCAAGTGTCATTTCCTCTTGATATTTTCAAGCCTAGAAAAGTTAAAAACTTAAAAAAAGTTTCTA
GCATTCTCAGTAAGATGTTTGACATGTATCTTTGGTGTTTGCCTTGGATGAATAATGAATATTTTTTCATGTTGGATGAGCAGAAATTCAGTCCAGATTTTGTTTCATGGTCTACACTAACATCGTCGAAGGCTGTTATCCTGCTTACATCAAAGTTTACAAAGAGACAGCTTAGCATATCTCTTCTTGTAAGCTGATCG
GTAAAGCACGCAACATATCATTACGTGTTTGGTGCCAGATTCTGGACCCCATAATGTTATAGGTGGTGGTGGAGATGAAACTGTCAAGATTTTGCCTCGTGTCTAACCTGCCCATCCTAGTGGAAATGACAGGCAGGTAGAAATGAGTAGAAATAGTCTACTGAGAATGCTCGGGAAATTTCAAATTCCTGGCTTCATTA
GTTTTATTATGTACGTGCACCACATAAAAATAAAAAATATTTGTTTCTATTATATGCTGTGAAGTTAATGGAGTGTTAAGCATTTGTTAATAAGATGCCTACTTCTGTATATACTATATTATATATTTCCATGAGGGACCGTTTAATCTTAAAGCTTTGAAAGCTAGATGAAGTTACATGTTTTCAAGCTATTTGGTGTA
ATTGCATAGATACACTAATTATATATAGATTCGTGCT
>TRINITY_DN42427_c1_g1_i3 from sample A9 / Example unspliced isoform:CAGGCTACTTTGTTGAGCTCTTGGGGCTCCCCTTTCATCACAGATACTTATCTGTGGGATGAACTATTTTATTTTAGATCAGCACTTCTGTCAAACAAAATgtaagtgcacagctagagtttcgtacgcatgttccatagttttttctaatgaagttgatttatgttttcctagtgagaagatttaacactaaggttatc
taaaattgtgcagAGAGCTGATTCCCGGATCAAAGCAACAGCATAATTTAAATACTAATTCCACGGGTGCCGCCAACGAGAAAGATTGGAGGGTAAAAAATTTACTGAAACGATCTTATCTCAAATACTGGCTAAGGGGCATAGACATTAGTGGGCTTAAGGCTAATACTCAAACCCTTGGAGATGATAGTAGTTCTGAG
GCAAGCAAACCAAAGGATGCCATGGACTTTGCCAGATTAAAGGTTGAGAATGCTTCTCTTCAGGAAAGCATGGCAAACATGGAACATTTGACAACATCTATCCATCGACTTCGGCTAGCTCTTCTCAAAGTAAAAGAAGACACACAATTTTCAGCCGCTGGTGAAGGTGCTTTAGAAGTAATTAATGGCATAATCAATGA
GGCTCGGCATATTAAGACAGCACTTGGCAGCTCTCTTCCTGTTAGTTGGTCAGCAGACAGCACTTCAGATCTACCCGACTCTTCAGATTCAGAGATTGCCCCTGACAATGAAGATCATACAATTACTGGACTAGACAGTGTTTCAGCTGCTGGGATTGAGCTTGTAGAACTTTTGATCTTCGCTGCCGATCTACAGAAAA
TAGAGCTTATGCAGACGTCCAAACATGCCGTGCTTCTTGAGAATGGCCCAAGTGTCATTTCCTCTTGATATTTTCAAGCCTAGAAAAGTTAAAAACTTAAAAAAAGTTTCTAGCATTCTCAGTAAGATGTTTGACATGTATCTTTGGTGTTTGCCTTGGATGAATAATGAATATTTTTTCATGTTGGATGAGCAGAAATT
CAGTCCAGATTTTGTTTCATGGTCTACACTAACATCGTCGAAGGCTGTTATCCTGCTTACATCAAAGTTTACAAAGAGACAGCTTAGCATATCTCTTCTTGTAAGCTGATCGGTAAAGCACGCAACATATCATTACGTGTTTGGTGCCAGATTCTGGACCCCATAATGTTATAGGTGGTGGTGGAGATGAAACTGTCAAG
ATTTTGCCTCGTGTCTAACCTGCCCATCCTAGTGGAAATGACAGGCAGGTAGAAATGAGTAGAAATAGTCTACTGAGAATGCTCGGGAAATTTCAAATTCCTGGCTTCATTAGTTTTATTATGTACGTGCACCACATAAAAATAAAAAATATTTGTTTCTATTATATGCTGTGAAGTTAATGGAGTGTTAAGCATTTGTT
AATAAGATGCCTACTTCTGTATATACTATATTATATATTTCCATGAGGGACCGTTTAATCTTAAAGCTTTGAAAGCTAGATGAAGTTACATGTTTTCAAGCTATTTGGTGTAATTGCATAGATACACTAATTATATATAGATTCGTGCT
Intron 2 GTTTCTTTCA ... CTGTAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.67 | 12.7 | 6 | 11 |
| A2 | 28.87 | 21 | 9 | 8.1 |
| A3 | 17.08 | 18 | 2 | 5.9 |
| A4 | 41.67 | 13 | 14 | 3.9 |
| A5 | 25.95 | 15.3 | 7 | 3.7 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 8.57 | 16 | 0 | 3.4 |
| A8 | 4.76 | 8 | 0 | 0.9 |
| A9 | 26.92 | 10.3 | 6 | 1.3 |
| A10 | 7.14 | 10 | 0 | 1.7 |
>TRINITY_DN119483_c4_g2_i14 from sample A1 / Example spliced isoformTCCAAATCGATAAAACTTTTAAGATGGATAACCTGCTTTTCAACAACAAAACATACTTACGAAGTAAGCTCAATAAACCAATACCGGTAAAATCTTAACCTAAAGGTGTGAAAGTGCTCACTTCACCACTAGTCACATATATTCCACACAGAATATTATCCTTCCTTGAGATATACACACTGTATATATTCCCAATGTTT
AACTATGCGTTGCTGCTTTGGCTTTGACTTATTTTGAGAAGAATTGTAGTTCGGAAGAGCAGGTGGTGATTGTCTCACAAGGAAGTTCAACAATTCTTCGAAACGACAGTTACAGCCTTCCTGTCTAAACAATTTAATATAAATATGGCTTTCATAAACCTACAAATTAATTACATGCAAACAACTTGGCTTCGGGGCAC
AGATTTCAGCTCTCGACGCAATGGATTTCCGGAGATTTAAGTCGCACAGCATCCTATCAGCTCTGCTTTCGAGCGGATTCATCTCCTCTCAGACATGGGAGAGAGTACTAGCAACATTGCATCATTGAAGTGTCGTATTGAGCAACTTGAGCATGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAAC
AATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCGTATCAAAAGTCAGCTTGCCGATTTGCACAAATCAGAACTTGAGAAGAATTACGAGGCGGAGCAACAAA
TTAAATTCTTCCAAAGTCGAGTAGCTGCTGCATTTTCTGAGAGGGATCGTGCCATAATGGAGGTTGAGAGGGCCCATCAGGAAGAAGAGTCTACGTCTGATAAATTGAACGAGATTCAAAACAGGTACCATAAAGATGGAAGAAATTACAGCAGATTCCTTGGAACAAAAGAGACTTTGCTGTGAACTTCAGAGTAATCT
GGATGACACAAAAGCAGAAAACACAAAGTTGAAACAGGTTATAGAAAAGTTTTATCAAATCCGACAAGCAGCACTTGGAGTTCCTGAAGGTGAATCAGATGAAGATAAAGCAGAATGTCTTGTACAGGACCCTGCAAACTTGTGGAGTTTCAGGGAAGCTGAAGATATATCCAACGATGGCCCATCGCAAATGGTAATAT
TTAATGTTATTCACTTCTACTCAGTTTTGCTTCATATTGTGGACAGCTAGACAATGGACATAAATATCATTATCTTATCTTCATTTAAATTGGCATGAGTTGATTTTCTTGGACAAGAATAGATAAGTACTTTATGCTTCGGCAAACACATGAAGCTCTTTGATGTCCTCACCAAGCCTATCGTTGCACATGGATTTGAG
ATCTAGGGTATGTCATCACCCAACATGAATGTTGGGTGAGCATTTTAGGAATGAAGGATCCGTCACCAGTACCATCCAAGCTCCTCTCAGTTTGGGTTGGTTTGTGCCAACGCTAGGGGGGCTGTCCCTGGACACTGCCTATGGTCTATTAATTGGTCAAATAAAGCAAATCCAACCAATAAGCAGATAAAATTCACAAA
GGGTAAATAGCTACTAGCTTGGGATGGATTCGGAAAACCAGTGCCTACCGTTTGGTTCATGGGTCAGATGATAAATAAGTAAATGTCTGTCCGGTGATGGAGAAATCCAATGAGGCATTCGCTACGCATGAATTGTTAAATTTTTGGTGAGGGTAAGGGTTAGATACAAAGGTTTGATGAAAGGCAGGGCTTAGTACAGT
AAACACAATCTGAACACATAGTTCAGACTCAGCAAAGTCTGAGTGCAATAAATCAGTTCTGC
>TRINITY_DN119483_c4_g2_i6 from sample A1 / Example unspliced isoform:TCCAAATCGATAAAACTTTTAAGATGGATAACCTGCTTTTCAACAACAAAACATACTTACGAAGTAAGCTCAATAAACCAATACCGGTAAAATCTTAACCTAAAGGTGTGAAAGTGCTCACTTCACCACTAGTCACATATATTCCACACAGAATATTATCCTTCCTTGAGATATACACACTGTATATATTCCCAATGTTT
AACTATGCGTTGCTGCTTTGGCTTTGACTTATTTTGAGAAGAATTGTAGTTCGGAAGAGCAGGTGGTGATTGTCTCACAAGGAAGTTCAACAATTCTTCGAAACGACAGTTACAGCCTTCCTGTCTAAACAATTTAATATAAATATGGCTTTCATAAACCTACAAATTAATTACATGCAAACAACTTGGCTTCGGGGCAC
AGATTTCAGCTCTCGACGCAATGGATTTCCGGAGATTTAAGTCGCACAGCATCCTATCAGCTCTGCTTTCGAGCGGATTCATCTCCTCTCAGACATGGGAGAGAGTACTAGCAACATTGCATCATTGAAGTGTCGTATTGAGCAACTTGAGCATGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAAC
AATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCGTATCAAAAGTCAGCTTGCCGATTTGCACAAATCAGAACTTGAGAAGAATTACGAGGCGGAGCAACAAA
TTAAATTCTTCCAAAGTCGAGTAGCTGCTGCATTTTCTGAGAGGGATCGTGCCATAATGGAGgtttctttcataaagtttcttttgagtgtttaaatgtagttaatatatatatgaagctatcttttgagatttatgttgaaaaaatgccctgtaagcagGTTGAGAGGGCCCATCAGGAAGAAGAGTCTACGTCTGATA
AATTGAACGAGATTCAAAACAGGTACCATAAAGATGGAAGAAATTACAGCAGATTCCTTGGAACAAAAGAGACTTTGCTGTGAACTTCAGAGTAATCTGGATGACACAAAAGCAGAAAACACAAAGTTGAAACAGGTTATAGAAAAGTTTTATCAAATCCGACAAGCAGCACTTGGAGTTCCTGAAGGTGAATCAGATGA
AGATAAAGCAGAATGTCTTGTACAGGACCCTGCAAACTTGTGGAGTTTCAGGGAAGCTGAAGATATATCCAACGATGGCCCATCGCAAATGGTCACTTTGCAAGATGAATTGGCAGCATCTAGGGGCATGATAGAAAAACTACACAAACATCTAGAAGAGGCACGTACATCTGAAGATCTCATGCTGCAGAGGGTCAGTA
CTCTTGATGTAAAGCTGAAACAATCAGAAGACACCATCAGGAATGAGCTCTCCCTTCTCCGTATTTTTCAAGTTCAGAAGAGAAATGAGGTTCTGAATTTAGTTGAGGAGGAGCGTAAATGGCTGGAAGCAGCAATAGCAGAGCTCGAAACTCAAGTAAAGCTGCAGGTTATGAGCAAAATGGTTCCTTTTGGTTCCTTT
GATCTGAATGGAGACAGCCCGAGCACAAGCCTAGAAGAAAGCGAGAATACCGTTGTTAATGAAAATACAGAATGTTCTGGTGGAGATACAGTGGAAAAGCATTCTGATTCCTTAAACATTAATTCTGAAGAACAGTCAAATACTGATGACAGCAGGACAGTCCTTGCTCAAGCTTTAAAGGAAAAAGTTCAGGCACTGTT
GCTGCTTTCACAACAGGAGGAAAGGCATTTTCTAGAGAAAAACACAAATGCAGCTCTTGAGGAAAAAGTTGAAGAACTTCAGCAGAAACTATTGCAAGCCACTAATGAAAAGGTAGCAGCACTTATGGATGTAGCACAGCTAAGACAAGTATGCCAGCACCTACAAGAGCATGGAAGAGAGCTAATTCCACGTGTGCAGC
CATAGGGAAAGATTGGAGGGTAAAACATTTACTGAAATGATCTTATCTCAAATACTTGGCTTAAGGCCAATGCTCACAACATTTGAGATGGTCGTAGTTCTGACTCCTGAGACAAGCAAGCCTGAGGACACCATGGGCTTTGCCATTCTAAAGGTTGAGAGTGCTTCTCTTCAGATACAAGGTCACATGATTGTTTTGTG
CCAACTGCAAGGAAGATTTTTGACATCAAGTGCAATCTCAGGCAACTACTTGAACATGGTTGTCTTCCTGCATCAGCTGATGGAAAACTTGCCTTTTTTGGAGCTTGGCTTCTCTGATAATGCACTAAATTTAATTACCAGTGATCTGAATTTTAAGAGTAGTGTGCATGGTTTAGGTGCTGTTCTATATCCAGGTGGAA
CGGACTTGAAAAAATAACTGCTTGTCCAGGGGAGCAAAGACAGTGATTGTACTGCTTTACAGCATGTCCTTAAGCTTTATGCATACTGATGATGAAGAACTCCATTGTTTAGTTGCCAAAGGAGGCTGTGAGACTTGGTGAAGGAAATAAGGTGGGACTTTTCAAAGTGCATAACAGAAACAATTAAGGAGACTGGAAGT
GGATCCAGCAGTTTAAAGTGAAGACCACATAGCAGACTTAACTCTTGCAAGATAAAGTCAGCATGAAGTGTAGTGCCTTGCTTGAGACATGTACATTATAATCCTCACACCTCATCACATGTGTTATTGAAGAGGATCACTCATCAACTAATGGTGTCCTTAGGGTTTTCAATATCATACTGGTTGAGTATTTATACTTT
GGTGGAGGAGCTCTCTACCCCTTGTACATATTCCAAGGGTGTATCATCTTTAAGGGATATGGATCTAGATCAATGCACATATTTTGAGGGTGCCTTAGATTTTGGGGGATTGTCCTAACAACTGTTGCCTATATTTGCACAAATATCTAGGAGATCTATCTTGGAGGGGCACATGCATCTATGAGGTCCACATTCTAGGT
AATTTGTTAGCATTATTTGAGGAGCACCCTAGCTTTAAGATGGACACTTGGCTTCATTTCATCATCCCATGGAGGATTAGTTGTTCACCTTGTCATTCGCTCCCTTGTGGCATCTAGATCCAACTTTTGAGGAATCTTTTGACTTGCTTTTCTATTTCTTCTAGGAGGAATTTGTCAAATCATCTATATATATATATATA
TATATATATATATAT
Intron 3 GTATGCAATT ... CTGTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.37 | 20 | 9 | 0 |
| A2 | 13.51 | 16 | 5 | 0 |
| A3 | 30.16 | 22 | 14 | 5 |
| A4 | 9.09 | 5 | 0 | 1 |
| A5 | 9.09 | 5 | 1 | 0 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 23.81 | 8 | 3 | 2 |
| A8 | 15.38 | 11 | 0 | 4 |
| A9 | 18.52 | 11 | 2 | 3 |
| A10 | 0 | 10 | 0 | 0 |
>TRINITY_DN109339_c1_g2_i1 from sample A3 / Example spliced isoformTTCGGAAGAGCAGGTGGTGATTGTCTCACAAGGAAGTTCAACAATTCTTCGAAACGACAGTTACAGCCTTCCTGTCTAAACAATTTAATATAAATATGGCTTTCATAAACCTACAAATTAATTACATGCAAACAACTTGGCTTCGGGGCACAGATTTCAGCTCTCGACGCAATGGATTTCCGGAGATTTAAGTCGCACAG
CATCCTATCAGCTCTGCTTTCGAGCGGATTCATCTCCTCTCAGACATGGGAGAGAGTACTAGCAACATTGCATCATTGAAGTGTCGTATTGAGCAACTTGAGCATGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAACAATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAG
GATTGCTGGTTTGGAGCAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCGTATCAAAAGTCAGCTTGCCGATTTGCACAAATCAGAACTTGAGAAGAATTACGAGGCGGAGCAACAAATTAAATTCTTCCAAAGTCGAGTAGCTGCTG
CATTTTCTGAGAGGGATCGTGCCATAATGGAGGTTGAGAGGGCCCATCAGGAAGAAGAGTCTACGTCTGATAAATTGAACGAGATTCAAAACAGGTACCATAAAGATGGAAGAAATTACAGCAGATTCCTTGGAACAAAAGAGACTTTGCTGTGAACTTCAGAGTAATCTGGATGACACAAAAGCAGAAAACACAAAGTT
GAAACAGGTTATAGAAAAGTTTTATCAAATCCGACAAGCAGCACTTGGAGTTCCTGAAGGTGAATCAGATGAAGATAAAGCAGAATGTCTTGTACAGGACCCTGCAAACTTGTGGAGTTTCAGGGAAGCTGAAGATATATCCAACGATGGCCCATCGCAAATGGTCACTTTGCAAGATGAATTGGCAGCATCTAGGGGCA
TGATAGAAAAACTACACAAACATCTAGAAGAGGCACGTACATCTGAAGATCTCATGCTGCAGAGGGTCAGTACTCTTGATGTAAAGCTGAAACAATCAGAAGACACCATCAGGAATGAGCTCTCCCTTCTCCGTATTTTTCAAGTTCAGAAGAGAAATGAGGTTCTGAATTTAGTTGAGGAGGAGCGTAAATGGCTGGAA
GCAGCAATAGCAGAGCTCGAAACTCAAGTAAAGCTGCAGGTTATGAGCAAAATGGTTCCTTTTGGTTCCTTTGATCTGAATGGAGACAGCCCGAGCACAAGCCTAGAAGAAAGCGAGAATACCGTTGTTAATGAAAATACAGAATGTTCTGGTGGAGATACAGTGGAAAAGCATTCTGATTCCTTAAACATTAATTCTGA
AGAACAGTCAAATACTGATGACAGCAGGACAGTCCTTGCTCAAGCTTTAAAGGAAAAAGTTCAGGCACTGTTGCTGCTTTCACAACAGGAGGAAAGGCATTTTCTAGAGAAAAACACAAATGCAGCTCTTGAGGAAAAAGTTGAAGAACTTCAGCAGAAACTATTGCAAGTAATACACTTTGACACGTTCTATTCTGGAA
ATTTATTTTTTATTGTTACTGATTCTTGTAGCAGTCACGATGTCTATCCTTGCTATGGCTTGTTATTTCTCTGTACAGATGATAGCAAAATGTAATACCTGCCTTAGACAAGATGATTTTACTAAATCAAACCGGAAAACTGTTTTAAATTAACCTGAAAACTTTAGCAAAGCCGGTGACTCCAGATTTCTGAATCTTTT
TATGGAG
>TRINITY_DN109339_c1_g2_i17 from sample A3 / Example unspliced isoform:TTCGGAAGAGCAGGTGGTGATTGTCTCACAAGGAAGTTCAACAATTCTTCGAAACGACAGTTACAGCCTTCCTGTCTAAACAATTTAATATAAATATGGCTTTCATAAACCTACAAATTAATTACATGCAAACAACTTGGCTTCGGGGCACAGATTTCAGCTCTCGACGCAATGGATTTCCGGAGATTTAAGTCGCACAG
CATCCTATCAGCTCTGCTTTCGAGCGGATTCATCTCCTCTCAGACATGGGAGAGAGTACTAGCAACATTGCATCATTGAAGTGTCGTATTGAGCAACTTGAGCATGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAACAATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAG
GATTGCTGGTTTGGAGCAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCGTATCAAAGCAAGTTTGCAGAGTCAGCTTGCCGATTTGCACAAATCAGAACTTGAGAAGAATTACGAGGCGGAGCAACAAATTAAATTCTTCCAAAGTC
GAGTAGCTGCTGCATTTTCTGAGAGGGATCGTGCCATAATGGAGGTTGAGAGGGCCCATCAGGAAGAAGAGTCTACGTCTGATAAATTGAACGAGATTCAAAACAGGTACCATAAAGATGGAAGAAATTACAGCAGATTCCTTGGAACAAAAGAGACTTTGCTGTGAACTTCAGAGTAATCTGGATGACACAAAAGCAGA
AAACACAAAGTTGAAACAGGTTATAGAAAAGTTTTATCAAATCCGACAAGCAGCACTTGGAGTTCCTGAAGGTGAATCAGATGAAGATAAAGCAGAATGTCTTGTACAGGACCCTGCAAACTTGTGGAGTTTCAGGGAAGCTGAAGATATATCCAACGATGGCCCATCGCAAATGGTCACTTTGCAAGATGAATTGGCAG
CATCTAGGGGCATGATAGAAAAACTACACAAACATCTAGAAGAGGCACGTACATCTGAAGATCTCATGCTGCAGAGGGTCAGTACTCTTGATGTAAAGCTGgtatgcaatttcagattacttacatagttgtcacttgtgctcaaatggtttccatctgtcatctggtttggcaaatatttcttgtaattctcgtaactg
tatacagAAACAATCAGAAGACACCATCAGGAATGAGCTCTCCCTTCTCCGTATTTTTCAAGTTCAGAAGAGAAATGAGGTTCTGAATTTAGTTGAGGAGGAGCGTAAATGGCTGGAAGCAGCAATAGCAGAGCTCGAAACTCAAGTAAAGCTGCAGGTTATGAGCAAAATGGTTCCTTTTGGTTCCTTTGATCTGAATG
GAGACAGCCCGAGCACAAGCCTAGAAGAAAGCGAGAATACCGTTGTTAATGAAAATACAGAATGTTCTGGTGGAGATACAGTGGAAAAGCATTCTGATTCCTTAAACATTAATTCTGAAGAACAGTCAAATACTGATGACAGCAGGACAGTCCTTGCTCAAGCTTTAAAGGAAAAAGTTCAGGCACTGTTGCTGCTTTCA
CAACAGGAGGAAAGGCATTTTCTAGAGAAAAACACAAATGCAGCTCTTGAGGAAAAAGTTGAAGAACTTCAGCAGAAACTATTGCAAGTAATACACTTTGACACGTTCTATTCTGGAAATTTATTTTTTATTGTTACTGATTCTTGTAGCAGTCACGATGTCTATCCTTGCTATGGCTTGTTATTTCTCTGTACAGATGA
TAGCAAAATGTAATACCTGCCTTAGACAAGATGATTTTACTAAATCAAACCGGAAAACTGTTTTAAATTAACCTGAAAACTTTAGCAAAGCCGGTGACTCCAGATTTCTGAATCTTTTTATGGAG
Intron 4 GTTTGTAATT ... TTTGGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.91 | 13 | 10 | 8 |
| A2 | 6.06 | 31 | 4 | 0 |
| A3 | 0 | 15 | 0 | 0 |
| A4 | 2.56 | 19 | 0 | 1 |
| A5 | 0 | 8 | 0 | 0 |
| A6 | 100 | 0 | 1 | 1 |
| A7 | 0 | 8 | 0 | 0 |
| A8 | 0 | 4 | 0 | 0 |
| A9 | 5.26 | 9 | 0 | 1 |
| A10 | 0 | 14 | 0 | 0 |
>TRINITY_DN119483_c4_g2_i14 from sample A1 / Example spliced isoformTCCAAATCGATAAAACTTTTAAGATGGATAACCTGCTTTTCAACAACAAAACATACTTACGAAGTAAGCTCAATAAACCAATACCGGTAAAATCTTAACCTAAAGGTGTGAAAGTGCTCACTTCACCACTAGTCACATATATTCCACACAGAATATTATCCTTCCTTGAGATATACACACTGTATATATTCCCAATGTTT
AACTATGCGTTGCTGCTTTGGCTTTGACTTATTTTGAGAAGAATTGTAGTTCGGAAGAGCAGGTGGTGATTGTCTCACAAGGAAGTTCAACAATTCTTCGAAACGACAGTTACAGCCTTCCTGTCTAAACAATTTAATATAAATATGGCTTTCATAAACCTACAAATTAATTACATGCAAACAACTTGGCTTCGGGGCAC
AGATTTCAGCTCTCGACGCAATGGATTTCCGGAGATTTAAGTCGCACAGCATCCTATCAGCTCTGCTTTCGAGCGGATTCATCTCCTCTCAGACATGGGAGAGAGTACTAGCAACATTGCATCATTGAAGTGTCGTATTGAGCAACTTGAGCATGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAAC
AATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCGTATCAAAAGTCAGCTTGCCGATTTGCACAAATCAGAACTTGAGAAGAATTACGAGGCGGAGCAACAAA
TTAAATTCTTCCAAAGTCGAGTAGCTGCTGCATTTTCTGAGAGGGATCGTGCCATAATGGAGGTTGAGAGGGCCCATCAGGAAGAAGAGTCTACGTCTGATAAATTGAACGAGATTCAAAACAGGTACCATAAAGATGGAAGAAATTACAGCAGATTCCTTGGAACAAAAGAGACTTTGCTGTGAACTTCAGAGTAATCT
GGATGACACAAAAGCAGAAAACACAAAGTTGAAACAGGTTATAGAAAAGTTTTATCAAATCCGACAAGCAGCACTTGGAGTTCCTGAAGGTGAATCAGATGAAGATAAAGCAGAATGTCTTGTACAGGACCCTGCAAACTTGTGGAGTTTCAGGGAAGCTGAAGATATATCCAACGATGGCCCATCGCAAATGGTAATAT
TTAATGTTATTCACTTCTACTCAGTTTTGCTTCATATTGTGGACAGCTAGACAATGGACATAAATATCATTATCTTATCTTCATTTAAATTGGCATGAGTTGATTTTCTTGGACAAGAATAGATAAGTACTTTATGCTTCGGCAAACACATGAAGCTCTTTGATGTCCTCACCAAGCCTATCGTTGCACATGGATTTGAG
ATCTAGGGTATGTCATCACCCAACATGAATGTTGGGTGAGCATTTTAGGAATGAAGGATCCGTCACCAGTACCATCCAAGCTCCTCTCAGTTTGGGTTGGTTTGTGCCAACGCTAGGGGGGCTGTCCCTGGACACTGCCTATGGTCTATTAATTGGTCAAATAAAGCAAATCCAACCAATAAGCAGATAAAATTCACAAA
GGGTAAATAGCTACTAGCTTGGGATGGATTCGGAAAACCAGTGCCTACCGTTTGGTTCATGGGTCAGATGATAAATAAGTAAATGTCTGTCCGGTGATGGAGAAATCCAATGAGGCATTCGCTACGCATGAATTGTTAAATTTTTGGTGAGGGTAAGGGTTAGATACAAAGGTTTGATGAAAGGCAGGGCTTAGTACAGT
AAACACAATCTGAACACATAGTTCAGACTCAGCAAAGTCTGAGTGCAATAAATCAGTTCTGC
>TRINITY_DN119483_c4_g2_i10 from sample A1 / Example unspliced isoform:GAGCGGATTCATCTCCTCTCAGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAACAATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAGgtttgtaatttatatcatgtcgcccttgaatgcatgatcttaactctgcagaacatcttttgtcattaatgtacttatagcacc
ttatatagaactttgtaacttttcattttgtaacatagagataggggttaagaaagctattttacatgtacatcaaatcaaattaaaagctctgccaggattgctggtttggagcagGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCG
TATCAAAGCAAGATATCATCTCTTTCTTCTTGTCCTAAATCTTGCAATTAATATTTGTTTTTTTAAGATTTGGTTTTTAGGTTGCGGCCCTTATTTGACATGTTGAATTTATTCATGATGCTTTTAATTAATTGTCTATCATGTTTTTCCATCTTCAATTTGCAGAGTCAGC
Intron 5 GTTTGTAATT ... GCTCTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.52 | 8 | 10 | 7 |
| A2 | 6.45 | 29 | 4 | 0 |
| A3 | 0 | 6 | 0 | 0 |
| A4 | 3.7 | 13 | 0 | 1 |
| A5 | 0 | 7 | 0 | 0 |
| A6 | 100 | 0 | 1 | 1 |
| A7 | 0 | 8 | 0 | 0 |
| A8 | 0 | 4 | 0 | 0 |
| A9 | 11.11 | 4 | 0 | 1 |
| A10 | 0 | 11 | 0 | 0 |
>TRINITY_DN119483_c4_g2_i17 from sample A1 / Example spliced isoformTCCAAATCGATAAAACTTTTAAGATGGATAACCTGCTTTTCAACAACAAAACATACTTACGAAGTAAGCTCAATAAACCAATACCGGTAAAATCTTAACCTAAAGGTGTGAAAGTGCTCACTTCACCACTAGTCACATATATTCCACACAGAATATTATCCTTCCTTGAGATATACACACTGTATATATTCCCAATGTTT
AACTATGCGTTGCTGCTTTGGCTTTGACTTATTTTGAGAAGAATTGTAGTTCGGAAGAGCAGGTGGTGATTGTCTCACAAGGAAGTTCAACAATTCTTCGAAACGACAGTTACAGCCTTCCTGTCTAAACAATTTAATATAAATATGGCTTTCATAAACCTACAAATTAATTACATGCAAACAACTTGGCTTCGGGGCAC
AGATTTCAGCTCTCGACGCAATGGATTTCCGGAGATTTAAGTCGCACAGCATCCTATCAGCTCTGCTTTCGAGCGGATTCATCTCCTCTCAGACATGGGAGAGAGTACTAGCAACATTGCATCATTGAAGTGTCGTATTGAGCAACTTGAGCATGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAAC
AATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAGGATTGCTGGTTTGGAGCAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCGTATCAAAAGTCAGCTTGCCGATTTGCACAAATCAGAACTTGAGAAGGTA
ATAAATTTGGTGTCTGGTTCACTTTTACAGATGTTGGCTTGAACTGTGAACTAAGTGACTTCTTGTTTTGTTTTGAATTGTGTCTCAATCACTTTAGTTATGGTCTCCCATGCCAGTGCCAGTTTCTACCATGGTTATGGTCTTGAAAGTAAATATAGAGAGGTCTTGAGGATCCATTTGGATTGGTGAAGTTCAGAATT
CAGATTACTATGTCAATTTTTTCTGCAATTTGTGGTATTGCTTAACAAGTTAATAATATTTGGAGATTAAAGAATGCATTATATGAATCTAGGCTAGCATTAAGTTTCTTCGTTTTAGTACAAATATCACTCTTTACTTAGATTAGCCGAGATTTTGCAATCTTGAGCAAGCATGCACACTGACGGTAGAGGACATCACT
TGATTGATATCATAGTGAGCCATGCCATGGAAAAATTGATCATAGTCCCGTGATAACTAGCTATTATCTCAAGGCTCAAGGCACTTGAAGTCATGCAGCATTTTTCAGGTTGTTGTGTATTTACAAGCACTTACCATAATAAGGATCTATGTTCTCTGAGATATGATGCCTTTTTCTGTACAGATAAGAAAGTGTACTTC
TTGAAAGGTTATAAAACAAAAATATTCTTATCTTTGTAGATTTTAAGTTGGTATAATCTTCTGTAATTTGACAGTCTAATTAG
>TRINITY_DN119483_c4_g2_i10 from sample A1 / Example unspliced isoform:GAGCGGATTCATCTCCTCTCAGAACGCGAGGAGTTACAAAGAGATATTGAACAACTGTGCATGCAACAATCAGGATCTGGCTATATTGGTATTATAACACGAATACAAGCCCAGAGgtttgtaatttatatcatgtcgcccttgaatgcatgatcttaactctgcagaacatcttttgtcattaatgtacttatagcacc
ttatatagaactttgtaacttttcattttgtaacatagagataggggttaagaaagctattttacatgtacatcaaatcaaattaaaagctctgccagGATTGCTGGTTTGGAGCAGGAGATCGAAACATCGAAGCAGAAACTAGCTGCTTGTGTGCGAAACAATCACAATCTTCAAGAGGAGCTTTCTGAAGTTTATCG
TATCAAAGCAAGATATCATCTCTTTCTTCTTGTCCTAAATCTTGCAATTAATATTTGTTTTTTTAAGATTTGGTTTTTAGGTTGCGGCCCTTATTTGACATGTTGAATTTATTCATGATGCTTTTAATTAATTGTCTATCATGTTTTTCCATCTTCAATTTGCAGAGTCAGC