sp|Q7X7H9|SK3_ORYSJ ----> Shikimate kinase 3, chloroplastic
Intron 1 GTAAGTCATT ... TGGGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.3 | 17.8 | 7 | 16 |
| A2 | 29.27 | 20.3 | 1 | 10 |
| A3 | 23.19 | 16 | 2 | 2 |
| A4 | 40 | 19.5 | 5 | 8 |
| A5 | 0 | 10.5 | 0 | 0 |
| A6 | 0 | 26.3 | 0 | 0 |
| A7 | 28.26 | 57.8 | 4 | 3 |
| A8 | 20.08 | 31.8 | 0 | 4 |
| A9 | 28 | 36 | 0 | 4 |
| A10 | 28.5 | 38.3 | 5 | 0 |
>TRINITY_DN118119_c1_g3_i9 from sample A1 / Example spliced isoformCACAAACACTCATCAGATTTGTAAATGGATTCCTTTGTTCTGTACATGATTTGGGTTTTCTTTGTGTTAGGTCCTGAAGTGGGCACGCAATGCTTATTTATGCATTGACTCAACTAGTTTAGGTTACACATTACTGTTACATGCTTTGCCATCCAGGCATCCTCATCATTGATTATAAGGTTTACACGGAAGTCTCTCTA
ATGTGCAAGACTCACAAACTGGATCTGTTTTTGGTCCATAAGAGCTTCATTCCATTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACGACCGTT
GGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGT
TCGTCCTGAAAACTGGAGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTT
CAGATGTAAAAGTATCGTTACGAGACATTGCAGCAGAACTTGGTAACAAGGATGTTGCTCGCCTCTCTCCCACGGTTATTGCCATTGAGGCTTTGATGGAGATAAGCAAACTCATGACATACAGGAAACTGATGAATGCTGCTGCTGGATCGTAAGCCCAAGAGCACAAAGCCATCAGCTCAGCCTAGTATTAGATGCTG
TGTAGCAATACAAAGTTGTCTTATTTAGAAGTCCAATTGAGTGAAGCTGGTGCATTCAAATTGATTTTACAATACTAATAGTCATTTTCTTAGATAAAGCTGAAATGTGCAAATGCTATTATGTCTGTTTCATTCTTGGTTCAGCAAAGAAGGGGCAACTGTGGTAGAAATACAGAACCTATGGTGATAAGATCTACAAG
ACTGATCTTCTGTGTTTTGTGTAAACAATATTTGAGTGAATCTGGTATATTCAATTTATTTCTACAATAGCCATGTTCTTAGATAAAAGTGAAATGGGAACAAGCTAGTCTGTCTGTTTCATTCTTGGTTTCTTCATACCTGAACAAAGGACGGGTTGTTGAAAATAGCAATATAATAAATCTGCACTTTTGCAACTGTT
ATTGCATTTTAGGAAACGTGAAAAGTTTCCTGTGTGGTATTTTGAAAATTTCTTGTATTGTAATTGATAGAGGTATAAAGCTTCTAAAAGGAAGGTAGTGCATGGTAATAAATGGGAG
>TRINITY_DN118119_c1_g3_i2 from sample A1 / Example unspliced isoform:CACAAACACTCATCAGATTTGTAAATGGATTCCTTTGTTCTGTACATGATTTGGGTTTTCTTTGTGTTAGGTCCTGAAGTGGGCACGCAATGCTTATTTATGCATTGACTCAACTAGTTTAGGTTACACATTACTGTTACATGCTTTGCCATCCAGGCATCCTCATCATTGATTATAAGGTTTACACGGAAGTCTCTCTA
ATGTGCAAGACTCACAAACTGGATCTGTTTTTGGTCCATAAGAGCTTCATTCCATTTgtaagtcattcagggtgcagcaaggcactgtgcaaggaaaaggaatttttgcagtgtcatattagtcaagcatccattgggaactgacaattattcatatatcctagagaaagtgcttaaaactaaaagttctttccaagaga
agaaaatttgaaatcctgttttagtaattgcaagtactagatttttatatttattgtttaatttcttttatgtttcagaacattgaaagctgttgtttggttgttattgcaccatcattgtctgtagacagtaaccctctgaagtctttatatgaagacatgttttatataaaagtttcatttggtataatggtatctca
tgaaactgcatctgtacgtgacatgccattctcactccatcattgtattcaagtattctgtttttctcgcaattaatgttatcttatttctgtgcatgggaaacagTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGGTTAGTTTTCAAGTTTTGACATATGCAGTCAATGT
AAATTTGTAGTTTAGTAGCAAACGTGCAAACTTTTTTGTTGCAATGTTGATTCACAGTTCACTCCTAATTTTATTTTGCAAGTCCAATGTGCAATTGTGCTTATCTACCATGACTCTTGAGTGCTACGATTTGAGTGACAACGTTCGAGTATGTGGAGCAGCGATGTATTTATTGAGTTTCATATTCCTAATAAGAGATT
TTCAATGCAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAG
Intron 2 GTAAGTTGTT ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.33 | 67 | 16 | 11.7 |
| A2 | 21.81 | 41 | 11 | 7.3 |
| A3 | 21.81 | 64.7 | 18 | 6.7 |
| A4 | 27.07 | 62.7 | 23 | 7.7 |
| A5 | 24.41 | 15.7 | 5 | 4 |
| A6 | 16.79 | 86 | 17 | 19 |
| A7 | 23.67 | 189 | 58 | 19.3 |
| A8 | 27.07 | 106 | 39 | 17.3 |
| A9 | 25.48 | 166.7 | 56 | 19.3 |
| A10 | 21.95 | 153.3 | 43 | 12.7 |
>TRINITY_DN44704_c0_g1_i7 from sample A8 / Example spliced isoformCAAAAAGAAAAAAGGGGATCTCTTGCTAAATCACCCGGCTCAATTGACAATTTATAATGTCTCTTCATTAGAAATGTTGCGGCAACCACCATACGAATGATGGTTCTGGGCAAGCTAGATTCGCACCCCCGTTGGGCATGGGTTGAGTCAGTACTGTCTCACCCTCAATGGCATCCCACTCTTCCCCTAAATACTCTGAT
CAAAGCAATTTGTTTGTAATACACTTCTGCAAGACAATGATAGCTATATGTGTATTTGTGTTTTCAGAATGGTATTCTGTGTCACAGAGATAATGGCGCTGAAGGGTTTTAAAAGGGTTTAAGGATTATAGGAGAAATGGAAGGCATGGGAAAGCTTCTGGGGGAAATGTCGTTCAATTCAAGCGGAGGGGTGATCAACT
GGTTCCCAGGTCACATGCCTGCCCCAACTCAGGCCATTCGAGAGCGCCTCAAGCTGGCCGACCTCGTTGTAGAAGTCAGGGATGCCAGGTGTCTGATGTCAAAGTCTCAAAACAGATAAACTCATTACTTGGGATCAGGAGGCAATGATATTGAAGAAGAAGGCTGAAGAGATTATCCCACATTTGAAAGGAAAAATGTA
TTTATCTTGTTGGTATGATGGGTAGCGGAAAGGCAACTGTTGGAAGTTTTTTAGCAGAAGTCTTCGGATATTACTTTTTTGACAGGTAAACCAGGATTTTCGAAGAAACAGACAAATCTCTTCTTTCCACCATATTTTGTAGATTATTTTCTAGTGGCCATGCAGATATCAAACAAGTATAGTATGATATATGTCATCAC
AAAGCTGAGACTTCTATTTGTCCACGATTTGGATACTGC
>TRINITY_DN44704_c0_g1_i14 from sample A8 / Example unspliced isoform:CAAAAAGAAAAAAGGGGATCTCTTGCTAAATCACCCGGCTCAATTGACAATTTATAATGTCTCTTCATTAGAAATGTTGCGGCAACCACCATACGAATGATGGTTCTGGGCAAGCTAGATTCGCACCCCCGTTGGGCATGGGTTGAGTCAGTACTGTCTCACCCTCAATGGCATCCCACTCTTCCCCTAAATACTCTGAT
CAAAGCAATTTGTTTGTAATACACTTCTGCAAGACAATGATAGCTATATGTGTATTTGTGTTTTCAGAATGGTATTCTGTGTCACAGAGATAATGGCGCTGAAGGGTTTTAAAAGGGTTTAAGGATTATAGGAGAAATGGAAGGCATGGGAAAGCTTCTGGGGGAAATGTCGTTCAATTCAAGCGGAGGGGTGATCAACT
GGTTCCCAGGTCACATGCCTGCCCCAACTCAGGCCATTCGAGAGCGCCTCAAGCTGGCCGACCTCGTTGTAGAAGTCAGGGATGCCAGGTGTCTGATGTCAAAGTCTCAAAACAGATAAACTCATTACTTGGGATCAGGAGGCAATGATATTGAAGAAGAAGGCTGAAGAGATTATCCCACATTTGAAAGGAAAAATGTA
TTTATCTTGTTGgtaagttgttgataattggagatctatggggtctacaagggcagacagcttgtggtggctactaattcagacaatctgtaagatattccctatttactttgtggggtaagccaaaatatcctttttgcagGTATGATGGGTAGCGGAAAGGCAACTGTTGGAAGTTTTTTAGCAGAAGTCTTCGGATA
TTACTTTTTTGACAGGTAAACCAGGATTTTCGAAGAAACAGACAAATCTCTTCTTTCCACCATATTTTGTAGATTATTTTCTAGTGGCCATGCAGATATCAAACAAGTATAGTATGATATATGTCATCACAAAGCTGAGACTTCTATTTGTCCACGATTTGGATACTGC
Intron 3 GTAAGTTGTT ... CTCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.38 | 195.3 | 6 | 60.6 |
| A2 | 20.52 | 156.3 | 5 | 43.2 |
| A3 | 19.89 | 136.6 | 8 | 35.8 |
| A4 | 22.13 | 126.9 | 15 | 38.3 |
| A5 | 20.39 | 65.1 | 13 | 17.9 |
| A6 | 18.24 | 237.8 | 4 | 57.4 |
| A7 | 19.82 | 360.9 | 11 | 95.4 |
| A8 | 22.03 | 241.6 | 4 | 72.9 |
| A9 | 17.5 | 298.2 | 8 | 67.7 |
| A10 | 19.93 | 329.9 | 7 | 88.1 |
>TRINITY_DN113449_c2_g2_i5 from sample A2 / Example spliced isoformATTTGCAATACTGATCTTGTCTTCTTCAAAGCTGCGGGACGTAATGAAATTGAATACAGCATTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACGA
CCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCT
GTAGTTCGTCCTGAAAACTGGAGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGTGCACTTTTTTCCTTTGTACTTTTCTGTCATGATAGTTAACCTTCTCAA
TATCCATGACTGTTTGGAATTGATTCTAATTTCTCTCACATCATATCTGCAATATATACAATGTCTAAATATTTTCGAGGGTACTTAATTGCTGTAATACATGTATGAATTTCATTAGCAATATTCTTTGATTTCCAAATTACATGATAAGTATTGACAGAAGCAGCAGGACCATTAGGAAGGGGA
>TRINITY_DN113449_c2_g2_i4 from sample A2 / Example unspliced isoform:CATGAAACTGCATCTGTACGTGACATGCCATTCTCACTCCATCATTGTATTCAAGTATTCTGTTTTTCTCGCAATTAATGTTATCTTATTTCTGTGCATGGGAAACAGTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGGTTAGTTTTCAAGTTTTGACATATGCAGTCAAT
GTAAATTTGTAGTTTAGTAGCAAACGTGCAAACTTTTTTGTTGCAATGTTGATTCACAGTTCACTCCTAATTTTATTTTGCAAGTCCAATGTGCAATTGTGCTTATCTACCATGACTCTTGAGTGCTACGATTTGAGTGACAACGTTCGAGTATGTGGAGCAGCGATGTATTTATTGAGTTTCATATTCCTAATAAGAGA
TTTTCAATGCAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGgtaagttgttagtaattggagatctgtgggttctacccacgacagacagcttgtggtggctgcttgttcggacaatatataagctattccctatttacattgtggggtaaaccaaaattctctctttgcagGT
ATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGGTTTGTTTCCTGTGGACTTTTAGGTGTTGATTACCATTTCACCGTTCTGATTATTATTGTGTCTTTGTCATTTGCCCCAATTTCATGCACCCTAGACAAACTTTGTTATAAACAGTGATCAACTGTGCT
ACATCAGGCTAAAGAGCAATCAACCAAAATTC
Intron 4 GTCAGTACTG ... GTGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.42 | 6 | 18 | 8 |
| A2 | 58.44 | 16 | 19 | 26 |
| A3 | 66.67 | 10 | 21 | 19 |
| A4 | 72.22 | 10 | 29 | 23 |
| A5 | 66.67 | 5 | 7 | 13 |
| A6 | 58.4 | 26 | 40 | 33 |
| A7 | 69.81 | 16 | 40 | 34 |
| A8 | 71.43 | 11 | 27 | 28 |
| A9 | 68.92 | 23 | 50 | 52 |
| A10 | 76.19 | 10 | 32 | 32 |
>TRINITY_DN44704_c0_g1_i13 from sample A8 / Example spliced isoformCAAAAAGAAAAAAGGGGATCTCTTGCTAAATCACCCGGCTCAATTGACAATTTATAATGTCTCTTCATTAGAAATGTTGCGGCAACCACCATACGAATGATGGTTCTGGGCAAGCTAGATTCGCACCCCCGTTGGGCATGGGTTGAAATGGTATTCTGTGTCACAGAGATAATGGCGCTGAAGGGTTTTAAAAGGGTTTA
AGGATTATAGGAGAAATGGAAGGCATGGGAAAGCTTCTGGGGGAAATGTCGTTCAATTCAAGCGGAGGGGTGATCAACTGGTTCCCAGGTCACATGCCTGCCCCAACTCAGGCCATTCGAGAGCGCCTCAAGCTGGCCGACCTCGTTGTAGAAGTCAGGGATGCCAGGTGTCTGATGTCAAAGTCTCAAAACAGATAAAC
TCATTACTTGGGATCAGGAGGCAATGATATTGAAGAAGAAGGCTGAAGAGATTATCCCACATTTGAAAGGAAAAATGTATTTATCTTGTTGGTATGATGGGTAGCGGAAAGGCAACTGTTGGAAGTTTTTTAGCAGAAGTCTTCGGATATTACTTTTTTGACAGGTTTGGAGCAAAGTAGGTGCTTGTTTCGCTGTAGGT
TCCTGGGAATGAAAATCCTTCTATCCTTATTTCATTTGCTTCAAAGACCATGGTTGGAGGGCAACTTACTTCAAAGCTACATGTCATTGAGCTTGGTGTACAACCAGGTAAACCAGGATTTTCGAAGAAACAGACAAATCTCTTCTTTCCACCATATTTTGTAGATTATTTTCTAGTGGCCATGCAGATATCAAACAAGT
ATAGTATGATATATGTCATCACAAAGCTGAGACTTCTATTTGTCCACGATTTGGATACTGC
>TRINITY_DN44704_c0_g1_i10 from sample A8 / Example unspliced isoform:CAAAAAGAAAAAAGGGGATCTCTTGCTAAATCACCCGGCTCAATTGACAATTTATAATGTCTCTTCATTAGAAATGTTGCGGCAACCACCATACGAATGATGGTTCTGGGCAAGCTAGATTCGCACCCCCGTTGGGCATGGGTTGAgtcagtactgtctcaccctcaatggcatcccactcttcccctaaatactctgat
caaagcaatttgtttgtaatacacttctgcaagacaatgatagctatatgtgtatttgtgttttcagAATGGTATTCTGTGTCACAGAGATAATGGCGCTGAAGGGTTTTAAAAGGGTTTAAGGATTATAGGAGAAATGGAAGGCATGGGAAAGCTTCTGGGGGAAATGTCGTTCAATTCAAGCGGAGGGGTGATCAACT
GGTTCCCAGGTCACATGCCTGCCCCAACTCAGGCCATTCGAGAGCGCCTCAAGCTGGCCGACCTCGTTGTAGAAGTCAGGGATGCCAGGTGTCTGATGTCAAAGTCTCAAAACAGATAAACTCATTACTTGGGATCAGGAGGCAATGATATTGAAGAAGAAGGCTGAAGAGATTATCCCACATTTGAAAGGAAAAATGTA
TTTATCTTGTTGGTAAGTTGTTGATAATTGGAGATCTATGGGGTCTACAAGGGCAGACAGCTTGTGGTGGCTACTAATTCAGACAATCTGTAAGATATTCCCTATTTACTTTGTGGGGTAAGCCAAAATATCCTTTTTGCAGGTATGATGGGTAGCGGAAAGGCAACTGTTGGAAGTTTTTTAGCAGAAGTCTTCGGATA
TTACTTTTTTGACAGGTTTGTTTCCTGTGGACTTTTAGGTGTTGATTACCATTTCACCGTTCTGATTATTATTGTGTCTTTGTCATTTGCCCCAATTTCATGCACCCTAGACAAACTTTGTTATAAACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAG
GGCTTCAGAGATTCTGAG
Intron 5 GTTAGTTTTC ... CTCTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.47 | 100 | 36 | 9 |
| A2 | 31.4 | 83 | 38 | 6 |
| A3 | 33.61 | 81 | 41 | 7 |
| A4 | 37.58 | 93 | 56 | 8 |
| A5 | 32.73 | 37 | 18 | 2 |
| A6 | 28.81 | 126 | 51 | 2 |
| A7 | 29.39 | 197 | 82 | 12 |
| A8 | 30.3 | 138 | 60 | 13 |
| A9 | 26.49 | 136 | 49 | 4 |
| A10 | 29.81 | 186 | 79 | 10 |
>TRINITY_DN122790_c2_g1_i6 from sample A3 / Example spliced isoformCTTCAAAGCTGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAAC
CATACGAGATTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTT
TTTTTCAAAATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAATTGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCAT
CAACGAGTCAAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAAT
CCCACGTGGCGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTTCTGATAATCCAATTGCCTG
TCCCAACCCGGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTT
TGGGTCTTCCATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAA
GAAGTCTTTTAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTG
ACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGGAGCCACATGCGGCAAGGAATTACT
GTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATCGTTACGAGACATTGCAGCAGAACT
TGGTAACAAGGATGTCGCTCGCCTCTCTCCCACGGTTATTGCCATTGAGGCTTTGATGGAGATAAGCAAACTCATGACATACAGGAAACTGATGAATGCTGCTGCTGGATCGTAAGCCCAAGAGCACAAAGCCATCACCTCAGCCTAGTATTAGATGCTGTGTAGCAATACAAAGTTGTCTTATTTAGAAGTCCAATTGA
GTGAAGCTGGTGCATTCAAATTGATTTTACAATACTAATAGTCATTTTCTTAGATAAAGCTGAAATGTGCAAATGCTATTATGTCTGTTTCATTCTTGGTTCAGCAAAGAAGGGGCAACTGTGGTAGAAATACAGAACCTATGGTGATAAGATCTACAAGACTGATCTTCTGTGTTTTGTGTAAACAATATTTGAGTGAA
TCTGGTATATTCAATTTATTTCTACAATAGCCATGTTCTTAGATAAAAGTGAAATGGGAACAAGCTAGTCTGTCTGTTTCATTCTTGGTTTCTTCATACCTGAACAAAGGACGGGTTGTTGAAAATAGCAATATAATAAATCTGCACTTTTGCAACTGTTATTGCATTTTAGGAAACGTGAAAAGTTTCCTGTGTGGTAT
TTTGAAAATTTCTTGTATTGTAATTGATAGAGGTATAAAGCTTCTAAAAGGAAGGTAGTGCATGGTAATAAATGGGAGATTGGGTGACAATGGAGGCCCTTTGTGGATAGATTTTTTCTTTGCCCCCTACTGTAGGGGAGAATTAGTTCCACTGTAACGAGTTATTTGTGTCGGCTACTTTCTCCACATTAGTGCATATT
TGTGGTTGAATGACTGTTAAGTCATTTGCTGGTTAATATTGCCTCTTGTTTATTATACAGTGTAATTCTTTGCAGCAC
>TRINITY_DN122790_c2_g1_i3 from sample A3 / Example unspliced isoform:CTTCAAAGCTGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAAC
CATACGAGATTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTT
TTTTTCAAAATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAATTGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCAT
CAACGAGTCAAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAAT
CCCACGTGGCGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTTCTGATAATCCAATTGCCTG
TCCCAACCCGGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTT
TGGGTCTTCCATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAA
GAAGTCTTTTAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGgttagttttcaagttttgacatatgcagtcaatgtaaatttgtagtttagtagcaaacgtgcaaacttt
tttgttgcaatgttgattcacagttcactcctaattttattttgcaagtccaatgtgcaattgtgcttatctaccatgactcttgagtgctacgatttgagtgacaacgttcgagtatgtggagcagcgatgtatttattgagtttcatattcctaataagagattttcaatgcagaagaaggctgaagagattacccca
aatttgaaaggaaaatgtatatatcttgttggtaagttgttagtaattggagatctgtgggttctacccaggacagacagcttgtggtggctgcttgttcggacaatatataagctattccctatttacattgtggggtaaaccaaaattctctctttgcagGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATT
TTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGGTTTGTTTCCTGTGGACTTTTAGGTGTTGATTACCATTTCACCGTTCTGATTATTATTGTGTCTTTGTCATTTGCCCCAATTTCATGCACCCTAGACAAACTTTGTTATAAACAGTGATCAACTGTGCTACATCAGGCTAAAGAGCAATCAACCAAAATTCTAGC
CATCATTGCTTTTTTATGGTTCTGTCCAACAAACTGACCTAAAATAATACAGATGTCTAACGTTTCTTCTTAGAGTTGGTGCAATCTTTATACATTCACAAACATTAAAAATTAAAATCAATGATATAAGAGTATACAATAATAAGAAACAATTACAAGACAACTATCTGGATTCTGAACATAAATACTTCATTTGATTG
TTCCTGAAGTAAACTGTAAAGAATCTCTATTCCCATAAAAGTTTCCATGAAATTATTGTGCCAAAAGAGGAAGGCCTCCGTGCA
Intron 6 GTTAGGAATC ... CCTTTAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.16 | 205 | 3 | 72 |
| A2 | 28.89 | 124 | 0 | 50 |
| A3 | 28.96 | 146 | 0 | 59 |
| A4 | 32.59 | 96.5 | 2 | 46 |
| A5 | 30.07 | 58.3 | 0 | 25 |
| A6 | 27.7 | 409.5 | 2 | 156 |
| A7 | 28.86 | 579.8 | 0 | 233 |
| A8 | 30 | 462.3 | 1 | 197 |
| A9 | 29.04 | 421.3 | 0 | 171 |
| A10 | 28.98 | 456.8 | 0 | 184 |
>TRINITY_DN118119_c1_g3_i1 from sample A1 / Example spliced isoformCGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAACCATACGAGA
TTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTTGTTTTCAAA
ATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAAATGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCATCAACGAGTC
AAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAATCCCACGTGG
CGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTACTGATAATCCAATTGCCTGTCCCAACCC
GGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTTTGGGTCTTC
CATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAAGAAGTCTTT
TAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACG
ACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGGTAGTTAGATTTCAAATATTTTATAATTCTTATAGCACCATCCTCTAGAGTCTATATGACTC
GAAATTATGAACCTGGGAGGCATTGTGTTCTATGTTGTTTATATTGTTGTGTCATCTGCCAGTTCATATCTATTGAAGATCCTTAAAATGTCTCACTCAACTACTTTGTATGAATAAAAAGATGAATAATTCTCTTGTATCTTGTGTTTAGATGTCAGTAATTCCATTTCCTTTCAGAAAATAGCAACTTCTTTGTTTTC
TGGTTGTTGTTTTCATATATTGCAAATAGACAAAATTCTTAAATCTAGTATTCACAACCAGTTAGAATCTGCAATTTCTAATGTCGAACTGATTGGTTTTAGTTTTTGGCTGACAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGG
AGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATC
GTTACGAG
>TRINITY_DN118119_c1_g3_i6 from sample A1 / Example unspliced isoform:CTGTAGTTCGTCCTGAAAACTGgttaggaatctgttatgttctgatacagatttcatatgcagcctttgtattgttgttactatatggtggattgatgcagcccttataatgttagtaacatatattggatacagtgagtgaatgctttctcttgttttgtgttaaacctttaaaagGAGCCACATGCGGCAAGGAATTA
CTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATCGTTACGAGACATTGCAGCAGAA
CTTGGTAACAAGGATGTTGCTCGCCTCTCTCCCACGGTTATTGCCATTGAGGCTTTGATGGAGATAAGCAAACTCATGACATACAGGAAACTGATGAATGCTGCTGCTGGATCGTAAGCCCAAGAGCACAAAGCCATCAGCTCAGCCTAGTATTAGATGCTGTGTAGCAATACAAAGTTGTCTTATTTAGAAGTCCAATT
GAGTGAAGCTGGTGCATTCAAATTGATTTTACAATACTAATAGTCATTTTCTTAGATAAAGCTGAAATGTGCAAATGCTATTATGTCTGTTTCATTCTTGGTTCAGCAAAGAAGGGGCAACTGTGGTAGAAATACAGAACCTATGGTGATAAGATCTACAAGACTGATCTTCTGTGTTTTGTGTAAACAATATTTGAGTG
AATCTGGTATATTCAATTTATTTCTACAATAGCCATGTTCTTAGATAAAAGTGAAATGGGAACAAGCTAGTCTGTCTGTTTCATTCTTGGTTTCTTCATACCTGAACAAAGGACGGGTTGTTGAAAATAGCAATATAATAAATCTGCACTTTTGCAACTGTTATTGCATTTTAGGAAACGTGAAAAGTTTCCTGTGTGGT
ATTTTGAAAATTTCTTGTATTGTAATTGATAGAGGTATAAAGCTTCTAAAAGGAAGGTAGTGCATGGTAATAAATGGGAG
Intron 7 GTAGTTAGAT ... TGGCTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.62 | 211 | 75 | 28 |
| A2 | 14.2 | 139 | 32 | 14 |
| A3 | 17.55 | 157.3 | 45 | 22 |
| A4 | 16.1 | 99 | 30 | 8 |
| A5 | 24.06 | 71 | 29 | 16 |
| A6 | 18.57 | 372.7 | 119 | 51 |
| A7 | 18.73 | 614 | 203 | 80 |
| A8 | 18.85 | 450 | 144 | 65 |
| A9 | 17.4 | 436.7 | 122 | 62 |
| A10 | 14.88 | 492 | 119 | 53 |
>TRINITY_DN118119_c1_g3_i4 from sample A1 / Example spliced isoformCAAGCTCTTCTTCCTAAAGAAAGACATTCAGGGGTTTTCTTAGGGTTTCTTGTTTTGTAATTTAGTTTTTTCATCTTATTCTGATGTTATTGTTTTTGTCAGTTCTTTATTTTTTATTAATCCCAAAAGGTTTCGCGTTTTATTTTGCTTTACCTGTGTGAAGTTCCCAAGGCTCAAAGGTTAGGTTAGCCAAGAGATAT
GCATGTTAATGACATTGCTATGGGCCTTGAACTAAGTAAAACCTTCCTTGTAAATGGCACGCATTTGTATTCTAGATTCAAAACAAATGACGTTTTCATATACATCTAGGCTGAGTTTTTGAGTCTGTAGTTTTGTAATGCCCAAGCTCTTCTTCCTAAAGAAAGGCATGCAGCAGTACTCAAATTATTCATTGAAGATC
TGTGGGTTCTACCCAGGACAGACAGCTTGTGGTGGCTGCTTGTTCGGACAATATATAAGCTATTCCCTATTTACATTGTGGGGTAAACCAAAATTCTCTCTTTGCAGGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGTGATCAGTTGGTGGAGGAGG
CTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGGAGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAG
GCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATCGTTACGAGACATTGCAGCAGAACTTGGTAACAAGGATGTTGCTCGCCT
CTCTCCCACGGTTATTGCCATTGAGGCTTTGATGGAGATAAGCAAACTCATGACATACAGGAAACTGATGAATGCTGCTGCTGGATCGTAAGCCCAAGAGCACAAAGCCATCAGCTCAGCCTAGTATTAGATGCTGTGTAGCAATACAAAGTTGTCTTATTTAGAAGTCCAATTGAGTGAAGCTGGTGCATTCAAATTGA
TTTTACAATACTAATAGTCATTTTCTTAGATAAAGCTGAAATGTGCAAATGCTATTATGTCTGTTTCATTCTTGGTTCAGCAAAGAAGGGGCAACTGTGGTAGAAATACAGAACCTATGGTGATAAGATCTACAAGACTGATCTTCTGTGTTTTGTGTAAACAATATTTGAGTGAATCTGGTATATTCAATTTATTTCTA
CAATAGCCATGTTCTTAGATAAAAGTGAAATGGGAACAAGCTAGTCTGTCTGTTTCATTCTTGGTTTCTTCATACCTGAACAAAGGACGGGTTGTTGAAAATAGCAATATAATAAATCTGCACTTTTGCAACTGTTATTGCATTTTAGGAAACGTGAAAAGTTTCCTGTGTGGTATTTTGAAAATTTCTTGTATTGTAAT
TGATAGAGGTATAAAGCTTCTAAAAGGAAGGTAGTGCATGGTAATAAATGGGAG
>TRINITY_DN118119_c1_g3_i1 from sample A1 / Example unspliced isoform:CGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAACCATACGAGA
TTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTTGTTTTCAAA
ATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAAATGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCATCAACGAGTC
AAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAATCCCACGTGG
CGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTACTGATAATCCAATTGCCTGTCCCAACCC
GGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTTTGGGTCTTC
CATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAAGAAGTCTTT
TAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACG
ACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGgtagttagatttcaaatattttataattcttatagcaccatcctctagagtctatatgactc
gaaattatgaacctgggaggcattgtgttctatgttgtttatattgttgtgtcatctgccagttcatatctattgaagatccttaaaatgtctcactcaactactttgtatgaataaaaagatgaataattctcttgtatcttgtgtttagatgtcagtaattccatttcctttcagaaaatagcaacttctttgttttc
tggttgttgttttcatatattgcaaatagacaaaattcttaaatctagtattcacaaccagttagaatctgcaatttctaatgtcgaactgattggttttagtttttggctgacagAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGG
AGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATC
GTTACGAG
Intron 8 GTTTGGAGCA ... GTACAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90.67 | 70.3 | 25 | 682 |
| A2 | 90.02 | 52 | 25 | 469 |
| A3 | 89.21 | 66 | 28 | 545 |
| A4 | 88.53 | 65 | 17 | 501 |
| A5 | 93.22 | 16.7 | 2 | 229 |
| A6 | 44.21 | 94.3 | 45 | 74 |
| A7 | 50.59 | 151.7 | 77 | 152 |
| A8 | 39.35 | 86 | 43 | 55 |
| A9 | 46.58 | 140.7 | 58 | 121 |
| A10 | 60.94 | 104 | 67 | 159 |
>TRINITY_DN44704_c0_g1_i7 from sample A8 / Example spliced isoformCAAAAAGAAAAAAGGGGATCTCTTGCTAAATCACCCGGCTCAATTGACAATTTATAATGTCTCTTCATTAGAAATGTTGCGGCAACCACCATACGAATGATGGTTCTGGGCAAGCTAGATTCGCACCCCCGTTGGGCATGGGTTGAGTCAGTACTGTCTCACCCTCAATGGCATCCCACTCTTCCCCTAAATACTCTGAT
CAAAGCAATTTGTTTGTAATACACTTCTGCAAGACAATGATAGCTATATGTGTATTTGTGTTTTCAGAATGGTATTCTGTGTCACAGAGATAATGGCGCTGAAGGGTTTTAAAAGGGTTTAAGGATTATAGGAGAAATGGAAGGCATGGGAAAGCTTCTGGGGGAAATGTCGTTCAATTCAAGCGGAGGGGTGATCAACT
GGTTCCCAGGTCACATGCCTGCCCCAACTCAGGCCATTCGAGAGCGCCTCAAGCTGGCCGACCTCGTTGTAGAAGTCAGGGATGCCAGGTGTCTGATGTCAAAGTCTCAAAACAGATAAACTCATTACTTGGGATCAGGAGGCAATGATATTGAAGAAGAAGGCTGAAGAGATTATCCCACATTTGAAAGGAAAAATGTA
TTTATCTTGTTGGTATGATGGGTAGCGGAAAGGCAACTGTTGGAAGTTTTTTAGCAGAAGTCTTCGGATATTACTTTTTTGACAGGTAAACCAGGATTTTCGAAGAAACAGACAAATCTCTTCTTTCCACCATATTTTGTAGATTATTTTCTAGTGGCCATGCAGATATCAAACAAGTATAGTATGATATATGTCATCAC
AAAGCTGAGACTTCTATTTGTCCACGATTTGGATACTGC
>TRINITY_DN44704_c0_g1_i4 from sample A8 / Example unspliced isoform:CAAAAAGAAAAAAGGGGATCTCTTGCTAAATCACCCGGCTCAATTGACAATTTATAATGTCTCTTCATTAGAAATGTTGCGGCAACCACCATACGAATGATGGTTCTGGGCAAGCTAGATTCGCACCCCCGTTGGGCATGGGTTGAGTCAGTACTGTCTCACCCTCAATGGCATCCCACTCTTCCCCTAAATACTCTGAT
CAAAGCAATTTGTTTGTAATACACTTCTGCAAGACAATGATAGCTATATGTGTATTTGTGTTTTCAGAATGGTATTCTGTGTCACAGAGATAATGGCGCTGAAGGGTTTTAAAAGGGTTTAAGGATTATAGGAGAAATGGAAGGCATGGGAAAGCTTCTGGGGGAAATGTCGTTCAATTCAAGCGGAGGGGTGATCAACT
GGTTCCCAGGTCACATGCCTGCCCCAACTCAGGCCATTCGAGAGCGCCTCAAGCTGGCCGACCTCGTTGTAGAAGTCAGGGATGCCAGGTGTCTGATGTCAAAGTCTCAAAACAGATAAACTCATTACTTGGGATCAGGAGGCAATGATATTGAAGAAGAAGGCTGAAGAGATTATCCCACATTTGAAAGGAAAAATGTA
TTTATCTTGTTGGTATGATGGGTAGCGGAAAGGCAACTGTTGGAAGTTTTTTAGCAGAAGTCTTCGGATATTACTTTTTTGACAGgtttggagcaaagtaggtgcttgtttcgctgtaggttcctgggaatgaaaatccttctatccttatttcatttgcttcaaagaccatggttggagggcaacttacttcaaagcta
catgtcattgagcttggtgtacaaccagGTAAACCAGGATTTTCGAAGAAACAGACAAATCTCTTCTTTCCACCATATTTTGTAGATTATTTTCTAGTGGCCATGCAGATATCAAACAAGTATAGTATGATATATGTCATCACAAAGCTGAGACTTCTATTTGTCCACGATTTGGATACTGC
Intron 9 GTTTGTTTCC ... TTATAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.06 | 246 | 17 | 50 |
| A2 | 11.86 | 161 | 13 | 21 |
| A3 | 12.73 | 159.3 | 10 | 23 |
| A4 | 18.97 | 143 | 11 | 33 |
| A5 | 16.2 | 78.3 | 4 | 15 |
| A6 | 13.78 | 381.3 | 2 | 60 |
| A7 | 15.25 | 549.7 | 15 | 98 |
| A8 | 13.75 | 392.3 | 8 | 62 |
| A9 | 14.43 | 391.7 | 8 | 65 |
| A10 | 14.25 | 463.7 | 0 | 76 |
>TRINITY_DN122790_c2_g1_i6 from sample A3 / Example spliced isoformCTTCAAAGCTGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAAC
CATACGAGATTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTT
TTTTTCAAAATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAATTGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCAT
CAACGAGTCAAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAAT
CCCACGTGGCGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTTCTGATAATCCAATTGCCTG
TCCCAACCCGGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTT
TGGGTCTTCCATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAA
GAAGTCTTTTAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTG
ACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGGAGCCACATGCGGCAAGGAATTACT
GTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATCGTTACGAGACATTGCAGCAGAACT
TGGTAACAAGGATGTCGCTCGCCTCTCTCCCACGGTTATTGCCATTGAGGCTTTGATGGAGATAAGCAAACTCATGACATACAGGAAACTGATGAATGCTGCTGCTGGATCGTAAGCCCAAGAGCACAAAGCCATCACCTCAGCCTAGTATTAGATGCTGTGTAGCAATACAAAGTTGTCTTATTTAGAAGTCCAATTGA
GTGAAGCTGGTGCATTCAAATTGATTTTACAATACTAATAGTCATTTTCTTAGATAAAGCTGAAATGTGCAAATGCTATTATGTCTGTTTCATTCTTGGTTCAGCAAAGAAGGGGCAACTGTGGTAGAAATACAGAACCTATGGTGATAAGATCTACAAGACTGATCTTCTGTGTTTTGTGTAAACAATATTTGAGTGAA
TCTGGTATATTCAATTTATTTCTACAATAGCCATGTTCTTAGATAAAAGTGAAATGGGAACAAGCTAGTCTGTCTGTTTCATTCTTGGTTTCTTCATACCTGAACAAAGGACGGGTTGTTGAAAATAGCAATATAATAAATCTGCACTTTTGCAACTGTTATTGCATTTTAGGAAACGTGAAAAGTTTCCTGTGTGGTAT
TTTGAAAATTTCTTGTATTGTAATTGATAGAGGTATAAAGCTTCTAAAAGGAAGGTAGTGCATGGTAATAAATGGGAGATTGGGTGACAATGGAGGCCCTTTGTGGATAGATTTTTTCTTTGCCCCCTACTGTAGGGGAGAATTAGTTCCACTGTAACGAGTTATTTGTGTCGGCTACTTTCTCCACATTAGTGCATATT
TGTGGTTGAATGACTGTTAAGTCATTTGCTGGTTAATATTGCCTCTTGTTTATTATACAGTGTAATTCTTTGCAGCAC
>TRINITY_DN122790_c2_g1_i7 from sample A3 / Example unspliced isoform:CTTCAAAGCTGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAAC
CATACGAGATTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTT
TTTTTCAAAATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAATTGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCAT
CAACGAGTCAAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAAT
CCCACGTGGCGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTTCTGATAATCCAATTGCCTG
TCCCAACCCGGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTT
TGGGTCTTCCATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAA
GAAGTCTTTTAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGGTTAGTTTTCAAGTTTTGACATATGCAGTCAATGTAAATTTGTAGTTTAGTAGCAAACGTGCAAACTTT
TTTGTTGCAATGTTGATTCACAGTTCACTCCTAATTTTATTTTGCAAGTCCAATGTGCAATTGTGCTTATCTACCATGACTCTTGAGTGCTACGATTTGAGTGACAACGTTCGAGTATGTGGAGCAGCGATGTATTTATTGAGTTTCATATTCCTAATAAGAGATTTTCAATGCAGAAGAAGGCTGAAGAGATTACCCCA
AATTTGAAAGGAAAATGTATATATCTTGTTGGTAAGTTGTTAGTAATTGGAGATCTGTGGGTTCTACCCAGGACAGACAGCTTGTGGTGGCTGCTTGTTCGGACAATATATAAGCTATTCCCTATTTACATTGTGGGGTAAACCAAAATTCTCTCTTTGCAGGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATT
TTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGgtttgtttcctgtggacttttaggtgttgattaccatttcaccgttctgattattattgtgtctttgtcatttgccccaatttcatgcaccctagacaaactttgttataaacagTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCT
TCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGGAGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGG
ACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATCGTTACGAGACATTGCAGCAGAACTTGGTAACAAGGATGTCGCTCGCCTCTCTCCCACGGTTATTGCCATTGAGGCTTT
GATGGAGATAAGCAAACTCATGACATACAGGAAACTGATGAATGCTGCTGCTGGATCGTAAGCCCAAGAGCACAAAGCCATCACCTCAGCCTAGTATTAGATGCTGTGTAGCAATACAAAGTTGTCTTATTTAGAAGTCCAATTGAGTGAAGCTGGTGCATTCAAATTGATTTTACAATACTAATAGTCATTTTCTTAGA
TAAAGCTGAAATGTGCAAATGCTATTATGTCTGTTTCATTCTTGGTTCAGCAAAGAAGGGGCAACTGTGGTAGAAATACAGAACCTATGGTGATAAGATCTACAAGACTGATCTTCTGTGTTTTGTGTAAACAATATTTGAGTGAATCTGGTATATTCAATTTATTTCTACAATAGCCATGTTCTTAGATAAAAGTGAAA
TGGGAACAAGCTAGTCTGTCTGTTTCATTCTTGGTTTCTTCATACCTGAACAAAGGACGGGTTGTTGAAAATAGCAATATAATAAATCTGCACTTTTGCAACTGTTATTGCATTTTAGGAAACGTGAAAAGTTTCCTGTGTGGTATTTTGAAAATTTCTTGTATTGTAATTGATAGAGGTATAAAGCTTCTAAAAGGAAG
GTAGTGCATGGTAATAAATGGGAGATTGGGTGACAATGGAGGCCCTTTGTGGATAGATTTTTTCTTTGCCCCCTACTGTAGGGGAGAATTAGTTCCACTGTAACGAGTTATTTGTGTCGGCTACTTTCTCCACATTAGTGCATATTTGTGGTTGAATGACTGTTAAGTCATTTGCTGGTTAATATTGCCTCTTGTTTATT
ATACAGTGTAATTCTTTGCAGCAC
Intron 10 GTTAGTTTTC ... TTCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.38 | 127.2 | 25 | 19.6 |
| A2 | 14.93 | 105.7 | 19.4 | 19.1 |
| A3 | 12.58 | 119 | 18.3 | 18.8 |
| A4 | 15.85 | 104.9 | 22.3 | 17.4 |
| A5 | 11.06 | 50.3 | 7 | 11.9 |
| A6 | 7.98 | 162.7 | 16.6 | 12.3 |
| A7 | 10.16 | 261.1 | 32.5 | 23.8 |
| A8 | 12.95 | 157.7 | 25.6 | 11 |
| A9 | 6.71 | 206 | 16.7 | 19.8 |
| A10 | 8.78 | 247.3 | 27.4 | 23.9 |
>TRINITY_DN118119_c1_g3_i1 from sample A1 / Example spliced isoformCGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAACCATACGAGA
TTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTTGTTTTCAAA
ATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAAATGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCATCAACGAGTC
AAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAATCCCACGTGG
CGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTACTGATAATCCAATTGCCTGTCCCAACCC
GGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTTTGGGTCTTC
CATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAAGAAGTCTTT
TAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGAAGAAGGCTGAAGAGATTACCCCAAATTTGAAAGGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACG
ACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAGTGATCAGTTGGTGGAGGAGGCTTCAGGTGGTGCATCTGTAGCACAGATCTTCAAAGAGCGTAATGAACAGGGCTTCAGAGATTCTGAGGTAGTTAGATTTCAAATATTTTATAATTCTTATAGCACCATCCTCTAGAGTCTATATGACTC
GAAATTATGAACCTGGGAGGCATTGTGTTCTATGTTGTTTATATTGTTGTGTCATCTGCCAGTTCATATCTATTGAAGATCCTTAAAATGTCTCACTCAACTACTTTGTATGAATAAAAAGATGAATAATTCTCTTGTATCTTGTGTTTAGATGTCAGTAATTCCATTTCCTTTCAGAAAATAGCAACTTCTTTGTTTTC
TGGTTGTTGTTTTCATATATTGCAAATAGACAAAATTCTTAAATCTAGTATTCACAACCAGTTAGAATCTGCAATTTCTAATGTCGAACTGATTGGTTTTAGTTTTTGGCTGACAGAGTGAAGTGCTGAAGCAGTTATCTACTATGTATCGTCTAGTCATTGCCACTGGAGGTGGTGCTGTAGTTCGTCCTGAAAACTGG
AGCCACATGCGGCAAGGAATTACTGTTTGGTTGGATGTGCCTCTCGAGGCATTGGCTGCACGAGTTGTAGCAGTAGGGACAGAATCTCGACCTCTTTTAGGCCAAGCGTCGGATGACGGTTATTCACAGGCTTTAACAAGGCTCACTAAACTTTACGAAGATAGAGCTGAAGCATATGCAAGTTCAGATGTAAAAGTATC
GTTACGAG
>TRINITY_DN118119_c1_g3_i11 from sample A1 / Example unspliced isoform:CGCGGGACGTAATGAAATTGAATACAGCATGTAACATTTCTCTAAAACTGGCTTAATCAAGATACCTATATCGTCATCCGTGACATAAATCAGTGTCATACTTTCAAAAATTGCCCCCCTTCCCAGATCTGTGGCAACATACGTTTTCCAAACCCATTTTGTTTAGTATATAATCTTCCTATTACAACAACCATACGAGA
TTCAATACTTTTGGCAAAATTATTTCTTCCTGTATTCTGCAAATGTTTAATATACTACAATATCCATGTTTGTTCCTTTTACTGTACCATTCCATCCGAATCAGCACAGTCAATATATGCGGGGGTTTGATTTTGTAAAACTATGCGACCAACAACCGTCTTTTTACTTTTTCCTGCTTTAAGCAGATTTTGTTTTCAAA
ATTTATATTGTTTATTCAATGCGTTGCAAACTGTATATGAAATAGGGTTTGTCTCTGAAACAGGATATGAAATGGGGCCCTCCATATGTATATATACGTGTGTCAAAAGAAGGCTTATCCCATCTGCCTCCTATCCCATGAGATTACCAACCTCGTCCTTCCCTTACGCTCGTGGGATTCAAGTTTTTCATCAACGAGTC
AAGTCCAATAGCCTCTACCCCTCCTTCCTTACCAACTGCCCACCAAAGATCACATTTCAGCGGATTTCTCAACAACCTCACTGCCCTTGAACACCCCCAAATTGCCCTTAAATGTGGAGGCACCTGCATTGCTCGAGGCCATTCTCGCCTCCACGTTCGGGGTTTGCTCCAAAGCAGCAACCCTGAATAATCCCACGTGG
CGTCTCCAAAGATTTCGGTGAAGTCGTAGTTGATTTTGGACGTGTTTTTGTTCATCTTGCCGAATTGATGAATCAGCAAGCTCTTTCTCGTGTTTCAAGCAATACCCAATTTATTTCCAACCTAGAAACTTGTAAGTTCCTAGAGTTGAAGCGTGGATTAACAGATACATTACTGATAATCCAATTGCCTGTCCCAACCC
GGTTTTTTAGGGGCTTTTCTACATTACTGCTGGCCTCTGGAAAGCTATTGAGTTTTTGTGTGCTTCTTATTGGGAACCTTGTATTCTGGGGACCTTTAGGACTACATAACTACTCGTTGTCCTGTGGGTTCTTCTGGAGTTTGATCATAGACCCATTTTGAAATTTAGGTTGCCACCAATTTTGTGGTCTTTGGGTCTTC
CATGGCAGTGTTCAGCATGGAACTGGGAAGAATTGAATTTGGTAGTTCATGGAAGGTCCAGTATCATCCTTGTTGTCCTATTCAGGATGCAAGTGGAAGGAAGAAAAGGTTATCTGTGAAGTCCGGTGGACAATGGAAAGGAGGAGAGCTTCATAGAAGCAACAATCTGCAGATGGTGGTTCCCGAGAAAAGAAGTCTTT
TAAATGACGCCAGATTGCCCTCTCTCAAGCCTCTTTCCTGCACTACTAATGGAAGATATGTTTTGTCTGAAGTCAAAACAGATAAACTCAGTACTTGGGATCAGGAGGCATTGATATTGAAGgttagttttcaagttttgacatatgcagtcaatgtaaatttgtagtttagtagcaaacgtgcaaacttttttgttgca
atgttgattcacagttcactcctaattttattttgcaagtccaatgtgcaattgtgcttatctaccatgactcttgagtgctacgatttgagtgacaacgttcgagtatgtggagcagcgatgtatttattgagtttcatattcctaataagagattttcaatgcagAAGAAGGCTGAAGAGATTACCCCAAATTTGAAA
GGAAAATGTATATATCTTGTTGGTATGATGGGTAGTGGAAAGACGACCGTTGGAAAGATTTTAGCAGAAGTCTTGGGATATTACTTTTTTGACAG