sp|Q9FFF5|ALFL1_ARATH ----> PHD finger protein ALFIN-LIKE 1

Intron 1 GTTAGGAGTT ... ATTTCTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	11.81	39	5.5	2
A2	11.11	42	6	7.5
A3	7.26	53	4.5	5.5
A4	13.92	40	7	6.5
A5	10.83	16	2	3.5
A6	8.05	276	26.5	24.5
A7	8.88	196	20.5	20.5
A8	8.77	207	22	27.5
A9	9.54	191	22	24
A10	12.5	159	26.5	17

>TRINITY_DN103394_c0_g1_i1 from sample A3 / Example spliced isoform

CCAAAAAGCAGGAGTCTAACCCAAAATTTGTGACATCCCTAGGAACGCAACAATATCCCATACGCCAAATGTTGTTCCAAATATTTCCAAGGTGCACGAACAAGAGGTCCGATTGACCCAGGAATCTTCATATATATATCCACTACCCTCCGATCGGACCCAAAGTACGAAAGCTTTAACGAGCACGCAACGGCAAACAA
GAAGGGCATTTGGGAAGCCTGTGTGCAAAACTGCGGGTTTTACTGACCAGGGAACGAGAGGATCGCTTAAATACCCGGCAATTTCCCTCGGATCTGCAACGGCTTTTTCATATTTTTTTTTTCCACTAGCCCGGCCCGTGGATGAGACGCTTCTACATATTGTTTGCTCATCACTCTCCCGCCGACCTTGTTTCGATTCC
TATTAACAACGTTATGTTGATTTTGGGCGCGCTATAATTGTCATGGAAGAGGAGAATTGGAGCGTTACAGTAGTAAAGTTGTAAAGCTGGTAGAATCAGGGAGCAGGATCCATTTTCTTTTATATTATTGTTGTTATTATTATAAGCGTGGTGCTTGGCATGGAGACCGCCGCCTCAATTTCTTCAAACCCTCGCACTGT
TGAAGAGGTGTTTAGAGACTACAGAGGCCGTCGAACTGCCATCGTCCGTGCTCTTACCACTGAGGTCGACCGCTTTTACTCGCTCTGTGATCCAGAGAAAGAGAATTTATGCCTTTATGGATATGCGAGTGAATCATGGGAAGTTAACTTGCCTGCTGAAGAAGTCCCACCAGAACTTCCAGAACCAGCTTTAGGTATCA
ATTTTGCAAGAGATGGCATGCAGCGAAAAGATTGGCTTTCCTTGGTTGCTGTGCATAGTGATGCTTGGTTGCTTGCTGTTGCTTTCTACCATGGCGCTCGGTTTAACCGGAATGAGAGGAAACGTCTTTTTAGTATGATAAACGATCTCCCAACTGTGTTTGAGGTGGTTACTGAGAGGAAGCCGCCAAAGGAGAAGACT
AATTCTGATAATAGTGGAAGCAAATCTAAGCCATCTGGAAAGCGAATGGGTGATGGTCAACTGAAGAATCCTAAACCAGTTTCATTGAAAGAGGAGGAAGAAACATACGAGGATGATGATGAAGAGCACAGTGATACAATCTGTGGAATTTGTGACGAGACCTATTCTATGGATGAATTTTGGATTGGGTGTGATACTTG
TGAAAGGTGGTATCATGGTAAGTGCGTGAAGATTTCAGCGGCTAAAGCGCAAAGTATCAAGCAATACAAATGCCCGTTATGTAATAACAAGAAATCTCGCTAGTGAACAGTATCAGTGGTAGTTAGCATGCCAGGGTGCCTTGCACAATCTTTGCACCTGGAAAGTGCTTTGGAAGCTGGATTAACCATAGTTTGTAGTA
ACCGGTCTTTTCAAAGTTTTAAGGTCATTGTTTGAATTTGACCACCTGGAACTGTTGTTTTAAGGTATCAATGTTACTATTCCTCTACAGCATTGAACTCGGACGCATAGAAGTTTAACGCTGTATTATTGCAAGAGAAAGTTTACTTTCTCATTTCTTAACATTGCTGTTTTCATTTTTCTCCCTGTTACTGATTAATA
CGATGAAATCCTTTAAGGCATGTGATAAACCTTTTACAAATTAGGTGGTAGGAGCAGGCCTTCAAAGGAAAGGTCTATAGGATTTATCTTTGATTTCTGTAAATTTGAAAAATTTACGTTGTGATCATTCTTGTTAATGAGTACGGCTTCTTATTGTTC

>TRINITY_DN103394_c0_g1_i3 from sample A3 / Example unspliced isoform:

GCAAATCTAAGCCATCTGGAAAGgttaggattttttcctttttgaagaatagaaaacgaacatttttcttgctaatgtttgttagctagcatttccctttgacacaaaagcttgatttacatgacatgctttctttatcatttctgtagCGAATGGGTGATGGTCAACTGAAGAATCCTAAACCAGTTTCATTGAAAGAG
GAGGAAGAAACATACGAGGATGATGATGAAGAGCACAGTGATACAATCTGTGGAATTTGTGACGAGACCTATTCTATGGATGAATTTTGGATTGGGTGTGATACTTGTGAAAGGTGGTATCATGGTAAGTGCGTGAAGATTTCAGCGGCTAAAGCGCAAAGTATCAAGCAATACAAATGCCCGTTATGTAATAACAAGAA
ATCTCGCTAGTGAACAGTATCAGTGGTAGTTAGCATGCCAGGGTGCCTTGCACAATCTTTGCACCTGGAAAGTGCTTTGGAAGCTGGATTAACCATAGTTTGTAGTAACCGGTCTTTTCAAAGTTTTAAGGTCATTGTTTGAATTTGACCACCTGGAACTGTTGTTTTAAGGTATCAATGTTACTATTCCTCTACAGCAT
TGAACTCGGACGCATAGAAGTTTAACGCTGTATTATTGCAAGAGAAAGTTTACTTTCTCATTTCTTAACATTGCTGTTTTCATTTTTCTCCCTGTTACTGATTAATACGATGAAATCCTTTAAGGCATGTGATAAACCTTTTACAAATTAGGTGGTAGGAGCAGGCCTTCAAAGGAAAGGTCTATAGGATTTATCTTTGA
TTTCTGTAAATTTGAAAAATTTACGTTGTGATCATTCTTGTTAATGAGTACGGCTTCTTATTGTTC