sp|O64584|WAP_ARATH ----> WPP domain-associated protein
Intron 1 GTGAGCCTGC ... GAGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68 | 16 | 21 | 47 |
| A2 | 59.32 | 12 | 18 | 17 |
| A3 | 60 | 18 | 26 | 28 |
| A4 | 58.9 | 15 | 18 | 25 |
| A5 | 87.5 | 1 | 5 | 9 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 68.35 | 1.7 | 6 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 63.64 | 2 | 3 | 4 |
| A10 | 0 | 2 | 0 | 0 |
>TRINITY_DN109127_c0_g1_i4 from sample A2 / Example spliced isoformTAAAAAAAGAAAGAAAAAGAAATAGGGGGCAGTAGAAAATCAGAAGCGCTGTGCTATTATTTCCGCTGAAAGTTGCAAAGTGAGACTGTTTAGGCAAAGCAGATGTCAAATTGTACTAGCCAACACGCGCTTCGGGCCCCGGATCTTCGATCCCGTGATCTATTTCAAATCGGTAAAAGGCGGGGGATTGAATCTTTACA
GCAACGCCAACGGAATTTTGCAGGAGTCAACCCATGTGCAATGATGATGTGTGGTATTCCACAGTTTCCAGTTAATCTCAAGTAATTGTCTATACTCTTCACTGTATTTCATATACCACAAGTCAAAATAAAACCTGCAAACCCTAGTAAGGGGTTTAAAAAACAAAGAGTTTGTAATGCGAGTTCCCCGCTTCACAAAA
TAGTGTATATTGCTATGAATTCGAAAGTTCAGCTGGTTAAATGATGGGCCATGGTCGGGTTGTTTAATGATAACATCCGTGAAGAAATACCCAGCTCCTGGTTGGACATGTCAGAAGGTTAGGGCTTCTATGTATCAGAAGAGTTCAAATGTGAAGGTTCTCAGAATTCGCCAGACACAGGTCTAAATTTACAGTCATGA
TAGCAACAGTGACACTCTTGCAGTAGCCAATAACCGGGTAGGTTATTGTTTGGATCTCGTGCTCGGAGAGCCGCAACGTAGTAATTATCCAGCCTAATTACCCTTTGGGTTTCTCATGCCTGGGCTTTGACTATTTACTGCTGGATACTGCTGTGATTGCACCTAGTGGTGCCAAGAAATTAATGTAATATTTGAGAACA
AAGATTTAGTATGAAGGTTTGTGAGTCTGGATATGCCTTCTTCATTTGACCTGGAAGGTTTAGGGAGCAGATTTTTTTTTCCAGTTGGGTACTCTCCCGGAATTCATTTGACCTGGAAGCTGCAATTGTTTGAATGGAGGCCCAGATTATTGATAGAAGCAGCAATGCTGGTCATGAAGTTGAGGACCATAATTTTGACA
TGGACAAGTGTTCGGAAGTCGAAAGTGCCGAAGACTGGGACAGAGAAGGAAGGTTTGATGGTAACATGGATGGTCAAGATCTTCTTGCTTATATTTCTGAAACACAAGATTTCCTTGAGGAAATGGAAGGCAGATTGTTGGTGTCGGCTATGGTTACCGATGCGGTTACGAATGGAATGGTAAATGCCGTATTGGAGGAG
TCGTCTGAGGCCCTTGCTGGAAAGGAAACAGAGATAGTTGCATTGAATGATAAATTGGAAGACAGGGACGCTAAACTGTGGAAGCTAGAGGAAACTCTGCGGTACAATCAGGAAGAGATGGCGTTTCATATTGCCGAAAGCAGATCGGATCGGGACAGGCTTGTTATGGACTTCATGCACGAGAAAGATCGAATGCAGCG
CAAGTTGCATGAAAGGACGGTTTGTCTTGAAGAGAAGGAGATACAGCTGGCTGGGAAAACTGAGAAGATTTTCGAGATGGAGACGAAGTTAGAGGCCGAGGAAAACAGAATTAGTGCCATGGAACAGCAGATAAAGAGTCTGCAAGAAGCCGACAATTCAAATAGAAGAGAAATTTTAGCTCTAGTCGAGGAACTTAAAA
GAGCAAAAGTGCAGCAAGAGACAGATCATTTCTTGGTTAGAGAAGAAACTTTGCAAAATGAGCACATTGAGAATTTACAGAGGGTTATAAAGGAAAATAATAAACATATTGGTTTCTTGGAACGGTCAATCTCCGAGAAAGACAAGACTATTATGTCTTTAAAGGAACAGAACAGTTTGCAGCTGCAGAATATAAAGAAT
CTCGAAGTAGCAGTAAGAGAAGAATCTGAAGGGCAGATGCTAAGGCAGGAAATTGAGAGGTGTGTAGAGAACACCATTTATGAAGGACAACTGCTAGAGCTAAGCGACATGTTTGAGACAAACACGCTGCAATCGAGGACTGTAATATTTGATATTCAACAGAAAATAGAGAAACTGAAGAAGGATTCTGAAACTGAGTT
GACCACAAAGAAGTTGGAAATTTTAGATCTCGCAGAACAACTAGAAGAAAATGAAATTTGCAATGGATTGCAAACTTCCGTTATTGTTGGTATATTAGAAACATTTATTCAGGAGTGTGAGTATCAAATGTCACAGTTTAGACAGGACTTGGATTTTAAGAATGAACATATAAATTTATTGGCTGGTAAGCTTGATAGTT
TGACGTTGGAGAGTGAGAGATTGCAGGCCCAAATATCTAGCAATCATGTAATTGATGCAGAGATAGAAAACAATCTTAGTACCATGAAGGCAAAGATGGAAATGCAATGTTTTAAATTGAAGGAGGAATTAGAGGAAGAAAGAGCTGCTATAAGAGATAATTTGCTAAGGATAACAAAACTTAAGACAACCAATGATTGT
CTGGCCAAAAGGTTGAGACAACATAAACTAAATCTAGAACAGTTGGAAGAAAAAATGTTGGAACAGCAATGGCAACAAGAAACCGAATGCCAGTTGGCTAACCAAGTCTATGAAAGAAAACTGATTGAAGCCATGCAACTTATCACAGACTTAAACTCAAAGTTGGAAAAGAAGGATATGGAATTAGCAGTTCACCTCAA
AACTGTTTTTGCATTAGAGACAGCCCTGAATGCTGAGAGGACAGAAGTGTTGAGATTACAAGAAAGGTTGGAAGTTTTTAAATCTCAGATTGGCAGTCTAAACAGCATTCACCTTCACAAGGTAAATTCTGCGTTTGACTATATCAACTCCAAATTTTTGGATATGACCCTAAAATTAGATGACTTTGAAGAAACTTCAA
AGATGTTCTTTCAACATATTCAGAGTCAGGTTGCCTTATTTCAGGAAGAACATCTAGAACAACAATGGAAGTATGGTTTTGAGGAGCAGATAAGTGAACTTATGCTAAGAGAATTCTCGAAGGACCTTGAAGGCTGGCTTAAAATAAAGGAGCAGGAAGAAAGAAAACCTTCTATGTTGCAAGTGAGACGGGATGAAGGG
AGGGTGGCACTGGTGAATGAGTTAAATCATCTACGTCAAGAGTTAGAGCTCTTAAAAATTGAGGAGCCAGTGAAATCTCCTGTCAATTCTGATGGCGGCAACTCAAATGGGTTCCAATACTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGCGGTCCTTGAGAAGGTTTTC
CGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATACAACTGAAAATGGGTTCCAATATTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGTGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATAATAGCTATACAACTG
CTCCGACAAGAAAAACTGCAGGTCATTCTTCAAAGGAACCAGATCTTTCTGGGCACACTCAGAATGAGATTGCAGATATTCTAGAAACTCCATTAAAAAGCATGTCTAAGGAGCAGCTCACAGCACATTACAAACAAGTAGTGGCTAAACTAAAAAGGGAGCATGAGTGCATTGTGGAAGAGAAAACTGAGGAGATTTAC
AAGCTTAAGAGGGATCTCCTCAGAGAGAAAGATAGTTTGCATTCTAAAAAAGACAAGGAATTAAATGTTTCGAAGAAAAGGATTGTTGAGATTACTGGAAAGTTGGTCAAACTTGTTGAGGAGAATGACAAGTTATCTTTAGCTCTTGTTGAGGATCAGAACCACAAAATGGTTGGCAGATTGAAGGATGAAATGCAGGT
TGAGAAGATAAGTTTACTTGAGAAAGTTAGAGAAAAAGAAGTTGAATTGAAAGCGTTGTCTGATGAACTTTCAGATGCCTTGAGAAAAGACAAAGAGCACTCATCAACAGAATCTTCCTTATTGAATCATATAGCAGAGTTGGAGTCTGAAAAGGCAGAGATGGATATAATGACTCTGAATACAATAGAGATATTAAGCA
TTCTGTTTGAGGAGATAGTCAAAGAAAGACAGAGTTTGTTGAGTTCGGCATTGAAGGAACAGGATCATATCATGCGAGAGAAAATTTCACTTGAAGAGAGGTTGCATGAAAAAGACAAGCTTCTGAATTTAGTGTGTAAAGAAAAGGAAGAGCATAAGCAACAAATAGCTTTGCTGGATAAACCGATTGAGGATAAGGAA
AATGCTTCATGTCTGGCATATAGGCAGTTGGAGCAAAGAGATCAGATTGAAAAAGAGAAAAAGATGTTAGATCAGGCGTTGGAAGAATGTGAAGAACTCAAGAAACAGAAACTGTCGCTTGAAAGTGCTATATTGGGTAAGAATGATATCTTAGATTCAGTGAGAAGAGAGCAGGAAGAACTGACGGAGCAGGTATTGTC
CATAAAGAAAGCAGTAGAAGAAAAGGAAACTACATTGAATATGGCATTGAGGGATCTTGAAAAGGCAAGGAAAGAAAAAGAAATACTTGAAGGAATAATCAGAGAAAAGGAAAATACTTTATATTTGTTTGCTCATAAAGAAGAAGACCAAAGGAAACAATTTGAAGCTATCATTGCAGACAAAGAAAATGCTTGCATTG
CAGCTGCAAGAAATATCAAAGAACACGAAGAAACGATATTTTCCCTCAAGAAAAATCTCAAGGAGAAGGAATTATCCTTGGAGTTGTCTGTGAACGTTAAAGAAGAGGAATTGCAACAGAAGTATCTCTTGCAGGCAGAAGTGCAGAAGCTGAAGATGGCTGTCAAGAACATGCAAATGCACATACACACAATTGAAAAG
CTGAATAAGATAGAGGTTGCTGAGGCTATTAAAAAATGCATGGACGTGTCGCTGGAGTTGGAGCGCAGGGTGATGGAGAAAATTCAAGAAAATGTTTCAAGGTTGGAACAATACAAACAACAATTAAAGAAGTTGCAAGGGCGAGTTGATTCACTTGTGTTAAGGGAGTCATATTACAAGGAGAAGCTCGAAAGAAAATG
TTGCAATCTTCAAAAAGCTGAGGAAGAGGTTGATTTGTTAGGAGATGAAGTGGATGCACTTTTAAGCCTACTTGAAAAGATTTATGCCGCGCTTGATCACTATTCACCAGTATTGCAGCATTATCCCGGGGTAAGATCATGCATTCTGTCTTGATTGTTATCTGTTTATGAAGGATTGTTTTTCCACAGAGATTAATTTT
GTGGCAGCTTTTTCTAAACATGTTACTTCTGTAATTTGAAAGGGGCTTAAATCTGTCAATAATAGACTCTGGAAAACACTGGCGAGGATGCTTGTTGAAAAG
>TRINITY_DN109127_c0_g1_i14 from sample A2 / Example unspliced isoform:TAAAAAAAGAAAGAAAAAGAAATAGGGGGCAGTAGAAAATCAGAAGCGCTGTGCTATTATTTCCGCTGAAAGTTGCAAAGTGAGACTGTTTAGGCAAAGCAGATGTCAAATTGTACTAGCCAACACGCGCTTCGGGCCCCGGATCTTCGATCCCGTGATCTATTTCAAATCGGTAAAAGGCGGGGGATTGAATCTTTACA
GCAACGCCAACGGAATTTTGCAGGAGTCAACCCATGTGCAATGATGATGTGTGGTATTCCACAGTTTCCAGTTAATCTCAAGTAATTGTCTATACTCTTCACTGTATTTCATATACCACAAGTCAAAATAAAACCTGCAAACCCTAGTAAGGGGTTTAAAAAACAAAGAGTTTGTAATGCGAGTTCCCCGCTTCACAAAA
TAGTGTATATTGCTATGAATTCGAAAGTTCAGCTGGTTAAATGATGGGCCATGGTCGGGTTGTTTAATGATAACATCCGTGAAGAAATACCCAGCTCCTGGTTGGACATGTCAGAAGGTTAGGGCTTCTATGTATCAGAAGAGTTCAAATGTGAAGGTTCTCAGgtgagcctgcttatcaatttttttcttttttgagtc
tcttaggatttgttaaatgtttggtaagaagaggctttcggaataatggaggttgtgtgttttttatcacactggatattgtcatgaaagctggacatgagcttgcagAATTCGCCAGACACAGGTCTAAATTTACAGTCATGATAGCAACAGTGACACTCTTGCAGTAGCCAATAACCGGGTAGGTTATTGTTTGGATC
TCGTGCTCGGAGAGCCGCAACGTAGTAATTATCCAGCCTAATTACCCTTTGGGTTTCTCATGCCTGGGCTTTGACTATTTACTGCTGGATACTGCTGTGATTGCACCTAGTGGTGCCAAGAAATTAATGTAATATTTGAGAACAAAGATTTAGTATGAAGGTTTGTGAGTCTGGATATGCCTTCTTCATTTGACCTGGAA
GGTTTAGGGAGCAGATTTTTTTTTCCAGTTGGGTACTCTCCCGGAATTCATTTGACCTGGAAGCTGCAATTGTTTGAATGGAGGCCCAGATTATTGATAGAAGCAGCAATGCTGGTCATGAAGTTGAGGACCATAATTTTGACATGGACAAGTGTTCGGAAGTCGAAAGTGCCGAAGACTGGGACAGAGAAGGAAGGTTT
GATGGTAACATGGATGGTCAAGATCTTCTTGCTTATATTTCTGAAACACAAGATTTCCTTGAGGAAATGGAAGGCAGATTGTTGGTGTCGGCTATGGTTACCGATGCGGTTACGAATGGAATGGTAAATGCCGTATTGGAGGAGTCGTCTGAGGCCCTTGCTGGAAAGGAAACAGAGATAGTTGCATTGAATGATAAATT
GGAAGACAGGGACGCTAAACTGTGGAAGCTAGAGGAAACTCTGCGGTACAATCAGGAAGAGATGGCGTTTCATATTGCCGAAAGCAGATCGGATCGGGACAGGCTTGTTATGGACTTCATGCACGAGAAAGATCGAATGCAGCGCAAGTTGCATGAAAGGACGGTTTGTCTTGAAGAGAAGGAGATACAGCTGGCTGGGA
AAACTGAGAAGATTTTCGAGATGGAGACGAAGTTAGAGGCCGAGGAAAACAGAATTAGTGCCATGGAACAGCAGATAAAGAGTCTGCAAGAAGCCGACAATTCAAATAGAAGAGAAATTTTAGCTCTAGTCGAGGAACTTAAAAGAGCAAAAGTGCAGCAAGAGACAGATCATTTCTTGGTTAGAGAAGAAACTTTGCAA
AATGAGCACATTGAGAATTTACAGAGGGTTATAAAGGAAAATAATAAACATATTGGTTTCTTGGAACGGTCAATCTCCGAGAAAGACAAGACTATTATGTCTTTAAAGGAACAGAACAGTTTGCAGCTGCAGAATATAAAGAATCTCGAAGTAGCAGTAAGAGAAGAATCTGAAGGGCAGATGCTAAGGCAGGAAATTGA
GAGGTGTGTAGAGAACACCATTTATGAAGGACAACTGCTAGAGCTAAGCGACATGTTTGAGACAAACACGCTGCAATCGAGGACTGTAATATTTGATATTCAACAGAAAATAGAGAAACTGAAGAAGGATTCTGAAACTGAGTTGACCACAAAGAAGTTGGAAATTTTAGATCTCGCAGAACAACTAGAAGAAAATGAAA
TTTGCAATGGATTGCAAACTTCCGTTATTGTTGGTATATTAGAAACATTTATTCAGGAGTGTGAGTATCAAATGTCACAGTTTAGACAGGACTTGGATTTTAAGAATGAACATATAAATTTATTGGCTGGTAAGCTTGATAGTTTGACGTTGGAGAGTGAGAGATTGCAGGCCCAAATATCTAGCAATCATGTAATTGAT
GCAGAGATAGAAAACAATCTTAGTACCATGAAGGCAAAGATGGAAATGCAATGTTTTAAATTGAAGGAGGAATTAGAGGAAGAAAGAGCTGCTATAAGAGATAATTTGCTAAGGATAACAAAACTTAAGACAACCAATGATTGTCTGGCCAAAAGGTTGAGACAACATAAACTAAATCTAGAACAGTTGGAAGAAAAAAT
GTTGGAACAGCAATGGCAACAAGAAACCGAATGCCAGTTGGCTAACCAAGTCTATGAAAGAAAACTGATTGAAGCCATGCAACTTATCACAGACTTAAACTCAAAGTTGGAAAAGAAGGATATGGAATTAGCAGTTCACCTCAAAACTGTTTTTGCATTAGAGACAGCCCTGAATGCTGAGAGGACAGAAGTGTTGAGAT
TACAAGAAAGGTTGGAAGTTTTTAAATCTCAGATTGGCAGTCTAAACAGCATTCACCTTCACAAGGTAAATTCTGCGTTTGACTATATCAACTCCAAATTTTTGGATATGACCCTAAAATTAGATGACTTTGAAGAAACTTCAAAGATGTTCTTTCAACATATTCAGAGTCAGGTTGCCTTATTTCAGGAAGAACATCTA
GAACAACAATGGAAGTATGGTTTTGAGGAGCAGATAAGTGAACTTATGCTAAGAGAATTCTCGAAGGACCTTGAAGGCTGGCTTAAAATAAAGGAGCAGGAAGAAAGAAAACCTTCTATGTTGCAAGTGAGACGGGATGAAGGGAGGGTGGCACTGGTGAATGAGTTAAATCATCTACGTCAAGAGTTAGAGCTCTTAAA
AATTGAGGAGCCAGTGAAATCTCCTGTCAATTCTGATGGCGGCAACTCAAATGGGTTCCAATACTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGCGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATACAACTGAAAATGGGT
TCCAATATTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGTGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATAATAGCTATACAACTGCTCCGACAAGAAAAACTGCAGGTCATTCTTCAAAGGAACCAGATCTTTCTGGGCAC
ACTCAGAATGAGATTGCAGATATTCTAGAAACTCCATTAAAAAGCATGTCTAAGGAGCAGCTCACAGCACATTACAAACAAGTAGTGGCTAAACTAAAAAGGGAGCATGAGTGCATTGTGGAAGAGAAAACTGAGGAGATTTACAAGCTTAAGAGGGATCTCCTCAGAGAGAAAGATAGTTTGCATTCTAAAAAAGACAA
GGAATTAAATGTTTCGAAGAAAAGGATTGTTGAGATTACTGGAAAGTTGGTCAAACTTGTTGAGGAGAATGACAAGTTATCTTTAGCTCTTGTTGAGGATCAGAACCACAAAATGGTTGGCAGATTGAAGGATGAAATGCAGGTTGAGAAGATAAGTTTACTTGAGAAAGTTAGAGAAAAAGAAGTTGAATTGAAAGCGT
TGTCTGATGAACTTTCAGATGCCTTGAGAAAAGACAAAGAGCACTCATCAACAGAATCTTCCTTATTGAATCATATAGCAGAGTTGGAGTCTGAAAAGGCAGAGATGGATATAATGACTCTGAATACAATAGAGATATTAAGCATTCTGTTTGAGGAGATAGTCAAAGAAAGACAGAGTTTGTTGAGTTCGGCATTGAAG
GAACAGGATCATATCATGCGAGAGAAAATTTCACTTGAAGAGAGGTTGCATGAAAAAGACAAGCTTCTGAATTTAGTGTGTAAAGAAAAGGAAGAGCATAAGCAACAAATAGCTTTGCTGGATAAACCGATTGAGGATAAGGAAAATGCTTCATGTCTGGCATATAGGCAGTTGGAGCAAAGAGATCAGATTGAAAAAGA
GAAAAAGATGTTAGATCAGGCGTTGGAAGAATGTGAAGAACTCAAGAAACAGAAACTGTCGCTTGAAAGTGCTATATTGGGTAAGAATGATATCTTAGATTCAGTGAGAAGAGAGCAGGAAGAACTGACGGAGCAGGTATTGTCCATAAAGAAAGCAGTAGAAGAAAAGGAAACTACATTGAATATGGCATTGAGGGATC
TTGAAAAGGCAAGGAAAGAAAAAGAAATACTTGAAGGAATAATCAGAGAAAAGGAAAATACTTTATATTTGTTTGCTCATAAAGAAGAAGACCAAAGGAAACAATTTGAAGCTATCATTGCAGACAAAGAAAATGCTTGCATTGCAGCTGCAAGAAATATCAAAGAACACGAAGAAACGATATTTTCCCTCAAGAAAAAT
CTCAAGGAGAAGGAATTATCCTTGGAGTTGTCTGTGAACGTTAAAGAAGAGGAATTGCAACAGAAGTATCTCTTGCAGGCAGAAGTGCAGAAGCTGAAGATGGCTGTCAAGAACATGCAAATGCACATACACACAATTGAAAAGCTGAATAAGATAGAGGTTGCTGAGGCTATTAAAAAATGCATGGACGTGTCGCTGGA
GTTGGAGCGCAGGGTGATGGAGAAAATTCAAGAAAATGTTTCAAGGTTGGAACAATACAAACAACAATTAAAGAAGTTGCAAGGGCGAGTTGATTCACTTGTGTTAAGGGAGTCATATTACAAGGAGAAGCTCGAAAGAAAATGTTGCAATCTTCAAAAAGCTGAGGAAGAGGTTGATTTGTTAGGAGATGAAGTGGATG
CACTTTTAAGCCTACTTGAAAAGATTTATGCCGCGCTTGATCACTATTCACCAGTATTGCAGCATTATCCCGGGATTCTTGATCTTCTAAAACTGGTTAAAAGAGAGTTGATGGATCATGCTAATTCTGGACCTTAACTCTAAGGAACCATTCAAATATAAGGAGATGCCATTTTTATGTCTCTGGTATCTGAGCCCTTT
GGTCATCAATATATATAATTTGTGGCTGTGGCTACTTTCTCTCCAGTCAAATTCTTTGGCCATATTCAGCTCCGCTTGAAGTGCTTTCGAAGGATAACCCTTAAAGATTCTGGATTTCCTCAATATTTGAGAGTGTAGCAGTGGTTCATGTAATTTAAAGGAGACTGCATGAGAACCAGACATTGTATCGTAGTGTATGT
AAAATTGATCAGGTTCATGTAATATATTTCTTCCAAGGCATGGCTTGTACATATGGAGAGTCTGACTGGTGCTGATTATGTTATTATTTGTATTGCCCTCAATTTGTATAAATTCTTCATTCTGCATCATCACCCTTCAGAATCCTTCATTGCTTCCCATATTAGATTCAGTTGTGATAGCTCAAGTCGCAATCTTCTTG
GGTTTGATATTGTATGCTGAAAATCTTTACTTCTCAAGGGACCCTATTTTTGTTATATATTTGATCTGCTTACATGCCAGTTTTGTATACGGCTTCATGAAATTCAAAGGAAGATAGGACTAGACAAATCAAAGCGGG
Intron 2 GTGAGCCTGC ... GTCATGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.11 | 13 | 21 | 43 |
| A2 | 63.64 | 10 | 18 | 17 |
| A3 | 57.78 | 19 | 26 | 26 |
| A4 | 59.46 | 15 | 18 | 26 |
| A5 | 70 | 3 | 5 | 9 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 68.35 | 1.7 | 6 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 63.64 | 2 | 3 | 4 |
| A10 | 0 | 2 | 0 | 0 |
>TRINITY_DN129347_c0_g1_i2 from sample A1 / Example spliced isoformCTATTATTTCCGCTGAAAGTTGCAAAGTGAGACTGTTTAGGCAAAGCAGATGTCAAATTGTACTAGCCAACACGCGCTTCGGGCCCCGGATCTTCGATCCCGTGATCTATTTCAAATCGGTAAAAGGCGGGGGATTGAATCTTTACAGCAACGCCAACGGAATTTTGCAGGAGTCAACCCATGTGCAATGATGATGTGTG
GTATTCCACAGTTTCCAGTTAATCTCAAGTAATTGTCTATACTCTTCACTGTATTTCATATACCACAAGTCAAAATAAAACCTGCAAACCCTAGTAAGGGGTTTAAAAAACAAAGAGTTTGTAATGCGAGTTCCCCGCTTCACAAAATAGTGTATATTGCTATGAATTCGAAAGTTCAGCTGGTTAAATGATGGGCCATG
GTCGGGTTGTTTAATGATAACATCCGTGAAGAAATACCCAGCTCCTGGTTGGACATGTTAGAAGGTTAGGGCTTCTATGTATCAGAAGAGTTCAAATGTGAAGGTTCTCAGCTGGACATGAGCTTGCAGAATTCGCCAGACACAGGTCTAAATTTACAGTCATGATAGCAACAGTGACACTCTTGCAGTAGCCAATAACC
GGGTAGGTTATTGTTTGGATCTCGTGCTCGGAGAGCCGCAACGTAGTAATTATCCAGCCTAATTACCCTTTGGGTTTCTCATGCCTGGGCTTTGACTATTTACTGCTGGATACTGCTGTGATTGCACCTAGTGGTGCCAAGAAATTAATGTAATATTTGAGAACAAAGATTTAGTATGAAGGTTTGTGAGTCTGGATATG
CCTTCTTCATTTGACCTGGAAGGTTTAGGGAGCAGATTTTTTTTTCCAGTTGGGTACTCTCCCGGAATTCATTTGACCTGGAAGCTGCAATTGTTTGAATGGAGGCCCAGATTATTGATAGAAGCAGCAATGCTGGTCATGAAGTTGAGGACCATAATTTTGACATGGACAAGTGTTCGGAAGTCGAAAGTGCCGAAGAC
TGGGACAGAGAAGGAAGGTTTGATGGTAACATGGATGGTCAAGATCTTCTTGCTTATATTTCTGAAACACAAGATTTCCTTGAGGAAATGGAAGGCAGATTGTTGGTGTCGGCTATGGTTACCGATGCGGTTACGAATGGAATGGTAAATGCCGTATTGGAGGAGTCGTCTGAGGCCCTTGCTGGAAAGGAAACAGAGAT
AGTTGCATTGAATGATAAATTGGAAGACAGGGACGCTAAACTGTGGAAGCTAGAGGAAACTCTGCGGTACAATCAGGAAGAGATGGCGTTTCATATTGCCGAAAGCAGATCGGATCGGGACAGGCTTGTTATGGACTTCATGCACGAGAAAGATCGAATGCAGCGCAAGTTGCATGAAAGGACGGTTTGTCTTGAAGAGA
AGGAGATACAGCTGGCTGGGAAAACTGAGAAGATTTTCGAGATGGAGACGAAGTTAGAGGCCGAGGAAAACAGAATTAGTGCCATGGAACAGCAGATAAAGAGTCTGCAAGAAGCCGACAATTCAAATAGAAGAGAAATTTTAGCTCTAGTCGAGGAACTTAAAAGAGCAAAAGTGCAGCAAGAGACAGATCATTTCTTG
GTTAGAGAAGAAACTTTGCAAAATGAGCACATTGAGAATTTACAGAGGGTTATAAAGGAAAATAATAAACATATTGGTTTCTTGGAACGGTCAATCTCCGAGAAAGACAAGACTATTATGTCTTTAAAGGAACAGAACAGTTTGCAGCTGCAGAATATAAAGAATCTCGAAGTAGCAGTAAGAGAAGAATCTGAAGGGCA
GATGCTAAGGCAGGAAATTGAGAGGTGTGTAGAGAACACCATTTATGAAGGACAACTGCTAGAGCTAAGCGACATGTTTGAGACAAACACGCTGCAATCGAGGACTGTAATATTTGATATTCAACAGAAAATAGAGAAACTGAAGAAGGATTCTGAAACTGAGTTGACCACAAAGAAGTTGGAAATTTTAGATCTCGCAG
AACAACTAGAAGAAAATGAAATTTGCAATGGATTGCAAACTTCCGTTATTGTTGGTATATTAGAAACATTTATTCAGGAGTGTGAGTATCAAATGTCACAGTTTAGACAGGACTTGGATTTTAAGAATGAACATATAAATTTATTGGCTGGTAAGCTTGATAGTTTGACGTTGGAGAGTGAGAGATTGCAGGCCCAAATA
TCTAGCAATCATGTAATTGATGCAGAGATAGAAAACAATCTTAGTACCATGAAGGCAAAGATGGAAATGCAATGTTTTAAATTGAAGGAGGAATTAGAGGAAGAAAGAGCTGCTATAAGAGATAATTTGCTAAGGATAACAAAACTTAAGACAACCAATGATTGTCTGGCCAAAAGGTTGAGACAACATAAACTAAATCT
AGAACAGTTGGAAGAAAAAATGTTGGAACAGCAATGGCAACAAGAAACCGAATGCCAGTTGGCTAACCAAGTCTATGAAAGAAAACTGATTGAAGCCATGCAACTTATCACAGACTTAAACTCAAAGTTGGAAAAGAAGGATATGGAATTAGCAGTTCACCTCAAAACTGTTTTTGCATTAGAGACAGCCCTGAATGCTG
AGAGGACAGAAGTGTTGAGATTACAAGAAAGGTTGGAAGTTTTTAAATCTCAGATTGGCAGTCTAAACAGCATTCACCTTCACAAGGTAAATTCTGCGTTTGACTATATCAACTCCAAATTTTTGGATATGACCCTAAAATTAGATGACTTTGAAGAAACTTCAAAGATGTTCTTTCAACATATTCAGAGTCAGGTTGCC
TTATTTCAGGAAGAACATCTAGAACAACAATGGAAGTATGGTTTTGAGGAGCAGATAAGTGAACTTATGCTAAGAGAATTCTCGAAGGACCTTGAAGGCTGGCTTAAAATAAAGGAGCAGGAAGAAAGAAAACCTTCTCTGTTGCAAGTGAGACGGGATGAAGGGAGGGTGGCACTGGTGAATGAGTTAAATCATCTACG
TCAAGAGTTAGAGCTCTTAAAAATTGAGGAGCCAGTGAAATCTCCTGTCAATTCTGATGGCGGCAACTCAAATGGGTTCCAATACTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGCGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGG
AGGATACAACTGAAAATGGGTTCCAATATTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGCGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATAATAGCTATACAACTGCTCCGACAAGAAAAACTGCAGGTCATTCTTCAAAG
GAACCAGATCTTTCTGGGCACACTCAGAATGAGATTGCAGATATTCTAGAAACTCCATTAAAAAGCATGTCTAAGGAGCAGCTCACAGCACATTACAAACAAGTAGTGGCTAAACTAAAAAGGGAGCATGAGTGCATTGTGGAAGAGAAAACTGAGGAGATTTACAAGCTTAAGAGGGATCTCCTCAGAGAGAAAGATAG
TTTGCATTCTAAAAAAGACAAGGAATTAAATGTTTCGAAGAAAAGGATTGTTGAGATTACTGGAAAGTTGGTCAAACTTGTTGAGGAGAATGACAAGTTATCTTTAGCTCTTGTTGAGGATCAGAACCACAAAATGGTTGGCAGATTGAAGGATGAAATGCAGGTTGAGAAGATAAGTTTACTTGAGAAAGTTAGAGAAA
AAGAAGTTGAATTGAAAGCGTTGTCTGATGAACTTTCAGATGCCTTGAGAAAAGACAAAGAGCACTCATCAACAGAATCTTCCTTATTGAATCATATAGCAGAGTTGGAGTCTGAAAAGGCAGAGATGGATATAATGACTCTGAATACAATAGAGATATTAAGCATTCTGTTTGAGGAGATAGTCAAAGAAAGACAGAGT
TTGTTGAGTTCGGCATTGAAGGAACAGGATCATATCATGCGAGAGAAAATTTCACTTGAAGAGAGGTTGCATGAAAAAGACAAGCTTCTGAATTTAGTGTGTAAAGAAAAGGAAGAGCATAAGCAACAAATAGCTTTGCTGGATAAACCGATTGAGGATAAGGAAAATGCTTCATGTCTGGCATATAGGCAGTTGGAGCA
AAGAGATCAGATTGAAAAAGAGAAAAAGATGTTAGATCAGGCGTTGGAAGAATGTGAAGAACTCAAGAAACAGAAACTGTCGCTTGAAAGTGCTATATTGGGTAAGAATGATATCTTAGATTCAGTGAGAAGAGAGCAGGAAGAACTGACGGAGCAGGTATTGTCCATAAAGAAAGCAGTAGAAGAAAAGGAAACTACAT
TGAATATGGCATTGAGGGATCTTGAAAAGGCAAGGAAAGAAAAAGAAATACTTGAAGGAATAATCAGAGAAAAGGAAAATACTTTATATTTGTTTGCTCATAAAGAAGAAGACCAAAGGAAACAATTTGAAGCTATCATTGCAGACAAAGAAAATGCTTGCATTGCAGCTGCAAGAAATATCAAAGAACACGAAGAAACG
ATATTTTCCCTCAAGAAAAATCTCAAGGAGAAGGAATTATCCTTGGAGTTGTCTGTGAACGTTAAAGAAGAGGAATTGCAACAGAAGTATCTCTTGCAGGCAGAAGTGCAGAAGCTGAAGATGGCTGTCAAGAACATGCAAATGCACATACACACAATTGAAAAGCTGAATAAGATAGAGGTTGCTGAGGCTATTAAAAA
ATGCATGGACGTGTCGCTGGAGTTGGAGCGCAGGGTGATGGAGAAAATTCAAGAAAATGTTTCAAGGTTGGAACAATACAAACAACAATTAAAGAAGTTGCAAGGGCGAGTTGATTCACTTGTGTTAAGGGAGTCATATT
>TRINITY_DN129347_c0_g1_i1 from sample A1 / Example unspliced isoform:CTATTATTTCCGCTGAAAGTTGCAAAGTGAGACTGTTTAGGCAAAGCAGATGTCAAATTGTACTAGCCAACACGCGCTTCGGGCCCCGGATCTTCGATCCCGTGATCTATTTCAAATCGGTAAAAGGCGGGGGATTGAATCTTTACAGCAACGCCAACGGAATTTTGCAGGAGTCAACCCATGTGCAATGATGATGTGTG
GTATTCCACAGTTTCCAGTTAATCTCAAGTAATTGTCTATACTCTTCACTGTATTTCATATACCACAAGTCAAAATAAAACCTGCAAACCCTAGTAAGGGGTTTAAAAAACAAAGAGTTTGTAATGCGAGTTCCCCGCTTCACAAAATAGTGTATATTGCTATGAATTCGAAAGTTCAGCTGGTTAAATGATGGGCCATG
GTCGGGTTGTTTAATGATAACATCCGTGAAGAAATACCCAGCTCCTGGTTGGACATGTTAGAAGGTTAGGGCTTCTATGTATCAGAAGAGTTCAAATGTGAAGGTTCTCAGgtgagcctgcttatcaatttttttcttttttgagtctcttaggatttgttaaatgtttggtaagaagaggctttcggaataatggaggt
tgtgtgttttttatcacactggatattgtcatgaaagCTGGACATGAGCTTGCAGAATTCGCCAGACACAGGTCTAAATTTACAGTCATGATAGCAACAGTGACACTCTTGCAGTAGCCAATAACCGGGTAGGTTATTGTTTGGATCTCGTGCTCGGAGAGCCGCAACGTAGTAATTATCCAGCCTAATTACCCTTTGGG
TTTCTCATGCCTGGGCTTTGACTATTTACTGCTGGATACTGCTGTGATTGCACCTAGTGGTGCCAAGAAATTAATGTAATATTTGAGAACAAAGATTTAGTATGAAGGTTTGTGAGTCTGGATATGCCTTCTTCATTTGACCTGGAAGGTTTAGGGAGCAGATTTTTTTTTCCAGTTGGGTACTCTCCCGGAATTCATTT
GACCTGGAAGCTGCAATTGTTTGAATGGAGGCCCAGATTATTGATAGAAGCAGCAATGCTGGTCATGAAGTTGAGGACCATAATTTTGACATGGACAAGTGTTCGGAAGTCGAAAGTGCCGAAGACTGGGACAGAGAAGGAAGGTTTGATGGTAACATGGATGGTCAAGATCTTCTTGCTTATATTTCTGAAACACAAGA
TTTCCTTGAGGAAATGGAAGGCAGATTGTTGGTGTCGGCTATGGTTACCGATGCGGTTACGAATGGAATGGTAAATGCCGTATTGGAGGAGTCGTCTGAGGCCCTTGCTGGAAAGGAAACAGAGATAGTTGCATTGAATGATAAATTGGAAGACAGGGACGCTAAACTGTGGAAGCTAGAGGAAACTCTGCGGTACAATC
AGGAAGAGATGGCGTTTCATATTGCCGAAAGCAGATCGGATCGGGACAGGCTTGTTATGGACTTCATGCACGAGAAAGATCGAATGCAGCGCAAGTTGCATGAAAGGACGGTTTGTCTTGAAGAGAAGGAGATACAGCTGGCTGGGAAAACTGAGAAGATTTTCGAGATGGAGACGAAGTTAGAGGCCGAGGAAAACAGA
ATTAGTGCCATGGAACAGCAGATAAAGAGTCTGCAAGAAGCCGACAATTCAAATAGAAGAGAAATTTTAGCTCTAGTCGAGGAACTTAAAAGAGCAAAAGTGCAGCAAGAGACAGATCATTTCTTGGTTAGAGAAGAAACTTTGCAAAATGAGCACATTGAGAATTTACAGAGGGTTATAAAGGAAAATAATAAACATAT
TGGTTTCTTGGAACGGTCAATCTCCGAGAAAGACAAGACTATTATGTCTTTAAAGGAACAGAACAGTTTGCAGCTGCAGAATATAAAGAATCTCGAAGTAGCAGTAAGAGAAGAATCTGAAGGGCAGATGCTAAGGCAGGAAATTGAGAGGTGTGTAGAGAACACCATTTATGAAGGACAACTGCTAGAGCTAAGCGACA
TGTTTGAGACAAACACGCTGCAATCGAGGACTGTAATATTTGATATTCAACAGAAAATAGAGAAACTGAAGAAGGATTCTGAAACTGAGTTGACCACAAAGAAGTTGGAAATTTTAGATCTCGCAGAACAACTAGAAGAAAATGAAATTTGCAATGGATTGCAAACTTCCGTTATTGTTGGTATATTAGAAACATTTATT
CAGGAGTGTGAGTATCAAATGTCACAGTTTAGACAGGACTTGGATTTTAAGAATGAACATATAAATTTATTGGCTGGTAAGCTTGATAGTTTGACGTTGGAGAGTGAGAGATTGCAGGCCCAAATATCTAGCAATCATGTAATTGATGCAGAGATAGAAAACAATCTTAGTACCATGAAGGCAAAGATGGAAATGCAATG
TTTTAAATTGAAGGAGGAATTAGAGGAAGAAAGAGCTGCTATAAGAGATAATTTGCTAAGGATAACAAAACTTAAGACAACCAATGATTGTCTGGCCAAAAGGTTGAGACAACATAAACTAAATCTAGAACAGTTGGAAGAAAAAATGTTGGAACAGCAATGGCAACAAGAAACCGAATGCCAGTTGGCTAACCAAGTCT
ATGAAAGAAAACTGATTGAAGCCATGCAACTTATCACAGACTTAAACTCAAAGTTGGAAAAGAAGGATATGGAATTAGCAGTTCACCTCAAAACTGTTTTTGCATTAGAGACAGCCCTGAATGCTGAGAGGACAGAAGTGTTGAGATTACAAGAAAGGTTGGAAGTTTTTAAATCTCAGATTGGCAGTCTAAACAGCATT
CACCTTCACAAGGTAAATTCTGCGTTTGACTATATCAACTCCAAATTTTTGGATATGACCCTAAAATTAGATGACTTTGAAGAAACTTCAAAGATGTTCTTTCAACATATTCAGAGTCAGGTTGCCTTATTTCAGGAAGAACATCTAGAACAACAATGGAAGTATGGTTTTGAGGAGCAGATAAGTGAACTTATGCTAAG
AGAATTCTCGAAGGACCTTGAAGGCTGGCTTAAAATAAAGGAGCAGGAAGAAAGAAAACCTTCTCTGTTGCAAGTGAGACGGGATGAAGGGAGGGTGGCACTGGTGAATGAGTTAAATCATCTACGTCAAGAGTTAGAGCTCTTAAAAATTGAGGAGCCAGTGAAATCTCCTGTCAATTCTGATGGCGGCAACTCAAATG
GGTTCCAATACTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGATGGTCAAAGAAAGGAGCGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATACAACTGAAAATGGGTTCCAATATTTCTCTCAGCTTACACAGGAAATGAAGAACGGAGAATCACCTGAT
GGTCAAAGAAAGGAGCGGTCCTTGAGAAGGTTTTCCGCAGGTCAGCTTTCTGCTGATACATCAAAACTGGAGGATAATAGCTATACAACTGCTCCGACAAGAAAAACTGCAGGTCATTCTTCAAAGGAACCAGATCTTTCTGGGCACACTCAGAATGAGATTGCAGATATTCTAGAAACTCCATTAAAAAGCATGTCTAA
GGAGCAGCTCACAGCACATTACAAACAAGTAGTGGCTAAACTAAAAAGGGAGCATGAGTGCATTGTGGAAGAGAAAACTGAGGAGATTTACAAGCTTAAGAGGGATCTCCTCAGAGAGAAAGATAGTTTGCATTCTAAAAAAGACAAGGAATTAAATGTTTCGAAGAAAAGGATTGTTGAGATTACTGGAAAGTTGGTCA
AACTTGTTGAGGAGAATGACAAGTTATCTTTAGCTCTTGTTGAGGATCAGAACCACAAAATGGTTGGCAGATTGAAGGATGAAATGCAGGTTGAGAAGATAAGTTTACTTGAGAAAGTTAGAGAAAAAGAAGTTGAATTGAAAGCGTTGTCTGATGAACTTTCAGATGCCTTGAGAAAAGACAAAGAGCACTCATCAACA
GAATCTTCCTTATTGAATCATATAGCAGAGTTGGAGTCTGAAAAGGCAGAGATGGATATAATGACTCTGAATACAATAGAGATATTAAGCATTCTGTTTGAGGAGATAGTCAAAGAAAGACAGAGTTTGTTGAGTTCGGCATTGAAGGAACAGGATCATATCATGCGAGAGAAAATTTCACTTGAAGAGAGGTTGCATGA
AAAAGACAAGCTTCTGAATTTAGTGTGTAAAGAAAAGGAAGAGCATAAGCAACAAATAGCTTTGCTGGATAAACCGATTGAGGATAAGGAAAATGCTTCATGTCTGGCATATAGGCAGTTGGAGCAAAGAGATCAGATTGAAAAAGAGAAAAAGATGTTAGATCAGGCGTTGGAAGAATGTGAAGAACTCAAGAAACAGA
AACTGTCGCTTGAAAGTGCTATATTGGGTAAGAATGATATCTTAGATTCAGTGAGAAGAGAGCAGGAAGAACTGACGGAGCAGGTATTGTCCATAAAGAAAGCAGTAGAAGAAAAGGAAACTACATTGAATATGGCATTGAGGGATCTTGAAAAGGCAAGGAAAGAAAAAGAAATACTTGAAGGAATAATCAGAGAAAAG
GAAAATACTTTATATTTGTTTGCTCATAAAGAAGAAGACCAAAGGAAACAATTTGAAGCTATCATTGCAGACAAAGAAAATGCTTGCATTGCAGCTGCAAGAAATATCAAAGAACACGAAGAAACGATATTTTCCCTCAAGAAAAATCTCAAGGAGAAGGAATTATCCTTGGAGTTGTCTGTGAACGTTAAAGAAGAGGA
ATTGCAACAGAAGTATCTCTTGCAGGCAGAAGTGCAGAAGCTGAAGATGGCTGTCAAGAACATGCAAATGCACATACACACAATTGAAAAGCTGAATAAGATAGAGGTTGCTGAGGCTATTAAAAAATGCATGGACGTGTCGCTGGAGTTGGAGCGCAGGGTGATGGAGAAAATTCAAGAAAATGTTTCAAGGTTGGAAC
AATACAAACAACAATTAAAGAAGTTGCAAGGGCGAGTTGATTCACTTGTGTTAAGGGAGTCATATT