sp|Q9SRS9|CHIP_ARATH ----> E3 ubiquitin-protein ligase CHIP
Intron 1 GTCATTGCAA ... TATGTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.22 | 14 | 1 | 4 |
| A2 | 18.75 | 13 | 0 | 3 |
| A3 | 23.08 | 10 | 1 | 3 |
| A4 | 37.5 | 10 | 0 | 6 |
| A5 | 28.57 | 5 | 0 | 2 |
| A6 | 33.33 | 22 | 1 | 11 |
| A7 | 20.78 | 61 | 0 | 16 |
| A8 | 22.5 | 62 | 0 | 18 |
| A9 | 17.74 | 51 | 0 | 11 |
| A10 | 22.03 | 46 | 0 | 13 |
>TRINITY_DN41489_c0_g2_i2 from sample A6 / Example spliced isoformACCAAAGCGATCCGAGTCATTGAAGCTATTTATTCATTCTTAATCTCTCAAGCTATCGAAGTGGCCTCTGTGCTTCCCATAATAGCCAAGGGATTCTTCCTATCTATTCAGGAATTTATCATCATTTCTTATTATTATTCAGTGAATAATGACGAAGCAAGCCGAACAGTTGAAGGAACTTGGCAATGCCTGCTTCAGAA
AAAAACGTTTTACAGCAGCAATTGATGCTTATACGGAGGCAATAACCCTATTCCCAAATAATGCAGTTTTTTGGACAAATCGAGCACTTTGTCATAGGAAACGCAATGATTGGATGCGGGTTGAGGCTGATTGTAGGAAAGCTTTGGAGCTTGACAAAGACTCTGCAAAGGCTCTCTATCTACTTGGATTAGCGATGGTT
GAAAGCAAGCAACTGAGTGAAGGAATTAAATACCTTGAAAAGGCTATGGAGAGAAGTAAAACTGGAAAACTTGAGGAGTATATTGCCTTTACATGGGATGTACTGGCCAAAGCAAAATATGAAGAATGGGAACATGGTGCTGCCCTTCGGCAAAATAAACAAGAAGAACTGAGGACAATTTGTGAAAGAGCTTTAAAAGT
AGAATATGAGGAGGCTGTTAAACGTCTGGAATCTGCAACTGGAAAATCCAGAAATAATGTAATTGTTATAGATGATGAAAGGACACATGACTTCTCAGCTCGAAGAGCTCAAGCACAGGACTATCAGCAAAGGTCTAGAACTCGTAAAAGAGCAGAATATTTGAGTTTAAATGACATATACAAGGATAGATGTTCTGCAC
TCTCTGAAGTATTTGACAAGGCTGCTGAACGCAACAGACCGGCAGAGATTCCAGATTATTTGACATGCAAGATAACAATGGAAATCTTGAAGGATCCTGTAATAACTCCAAGTGGCATAACATATGAAAAGTCAGCTGTTTTGGAGCATCTTCAGAAGGTGGGAAAATTTGATCCAGTGACACGACAAGTGCTAACAGCT
GATCAACTTATACCGAACTTTGCCATCAAAGAGGCTGCAAATGCTTATCTCAAAGAGAATGGTTGGGCATACAAGCATCAATAAGAATCCAATATGGCAATAAAAAGTTCCATATTCAGTACAATGCCTGCATTCTTGGAAAAGGCGAAGTCCAGCGTGTCACATTTTCTTTTGGAGTATTGGCATGAAATGTGCAGACC
CAACAACCGCCTTTTATCAAGTTATTGCTTATTTGGTGGTGTTGCTGTTAGAGTTCGCAGGGTAAATGACAAAAGATTCATTAAAAGAGGTCACAATATCTTCAGAGTTAAGTTTCCAAGGTCTACACAATCTGTACAATGAATGACAAATTGAGAAATATCATGGACAGTTGGATCTCAAATCAGTATCTATCTGTCTA
AACCCACAGTGCAGGGATTGCCTTCTCAGGACAAGGCTGCAACTTGATAGGCATCAGTAGTACAATTATAATCTGTTTACTTTTTTATTTGTTATTTGCTAAATGGCCATTATCATGAAGATGCCGAGTTTTATAATCATCCTTGTAACAATTGATGTAACTTCAATATTTACAGTTCTCGTATTGCATCATTTCTCTTG
TATTCAGATTTACTGACGAAAGATTTAGATGTGTCCACATCTTTTATTGTACTGTATAGCCTGATATGGAATAATGATTCCTACACAAAGCACAGCTTATTTATGGGTTGCACTAGCAAAAATATAACGATGAATGCATACTTGGAATGAGGGCTTGGATCAGACAACAGACAAGAATAATTTTTACATTTAGGGATACA
CAAAAGCCA
>TRINITY_DN41489_c0_g2_i1 from sample A6 / Example unspliced isoform:GTTTTGGAGCATCTTCAGAAGgtcattgcaagtgttggagacttctttttcactaattcatgtaaatttgtttagagttctgaaattcattctatgtaccagGTGGGAAAATTTGATCCAGTGACACGACAAGTGCTAACAGCTGATCAACTTATACCGAACTTTGCCATCAAAGAGGCTGCAAATGCTTATCTCAAAGA
GAATGGTTGGGCATACAAGCATCAATAAGAATCCAATATGGCAATAAAAAGTTCCATATTCAGTACAATGCCTGCATTCTTGGAAAAGGCGAAGTCCAGCGTGTCACATTTTCTTTTGGAGTATTGGCATGAAATGTGCAGACCCAACAACCGCCTTTTATCAAGTTATTGCTTATTTGGTGGTGTTGCTGTTAGAGTTC
GCAGGGTAAATGACAAAAGATTCATTAAAAGAGGTCACAATATCTTCAGAGTTAAGTTTCCAAGGTCTACACAATCTGTACAATGAATGACAAATTGAGAAATATCATGGACAGTTGGATCTCAAATCAGTATCTATCTGTCTAAACCCACAGTGCAGGGATTGCCTTCTCAGGACAAGGCTGCAACTTGATAGGCATCA
GTAGTACAATTATAATCTGTTTACTTTTTTATTTGTTATTTGCTAAATGGCCATTATCATGAAGATGCCGAGTTTTATAATCATCCTTGTAACAATTGATGTAACTTCAATATTTACAGTTCTCGTATTGCATCATTTCTCTTGTATTCAGATTTACTGACGAAAGATTTAGATGTGTCCACATCTTTTATTGTACTGTA
TAGCCTGATATGGAATAATGATTCCTACACAAAGCACAGCTTATTTATGGGTTGCACTAGCAAAAATATAACGATGAATGCATACTTGGAATGAGGGCTTGGATCAGACAACAGACAAGAATAATTTTTACATTTAGGGATACACAAAAGCCA
Intron 2 GTAAGATTCC ... CTTCTAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.78 | 15 | 10 | 6 |
| A2 | 47.06 | 9 | 8 | 8 |
| A3 | 38.46 | 4 | 4 | 1 |
| A4 | 36 | 8 | 5 | 4 |
| A5 | 73.33 | 2 | 8 | 3 |
| A6 | 37.7 | 19 | 15 | 8 |
| A7 | 35.77 | 44 | 21 | 28 |
| A8 | 48.15 | 49 | 58 | 33 |
| A9 | 45.83 | 39 | 37 | 29 |
| A10 | 43.64 | 31 | 24 | 24 |
>TRINITY_DN41489_c0_g2_i2 from sample A6 / Example spliced isoformACCAAAGCGATCCGAGTCATTGAAGCTATTTATTCATTCTTAATCTCTCAAGCTATCGAAGTGGCCTCTGTGCTTCCCATAATAGCCAAGGGATTCTTCCTATCTATTCAGGAATTTATCATCATTTCTTATTATTATTCAGTGAATAATGACGAAGCAAGCCGAACAGTTGAAGGAACTTGGCAATGCCTGCTTCAGAA
AAAAACGTTTTACAGCAGCAATTGATGCTTATACGGAGGCAATAACCCTATTCCCAAATAATGCAGTTTTTTGGACAAATCGAGCACTTTGTCATAGGAAACGCAATGATTGGATGCGGGTTGAGGCTGATTGTAGGAAAGCTTTGGAGCTTGACAAAGACTCTGCAAAGGCTCTCTATCTACTTGGATTAGCGATGGTT
GAAAGCAAGCAACTGAGTGAAGGAATTAAATACCTTGAAAAGGCTATGGAGAGAAGTAAAACTGGAAAACTTGAGGAGTATATTGCCTTTACATGGGATGTACTGGCCAAAGCAAAATATGAAGAATGGGAACATGGTGCTGCCCTTCGGCAAAATAAACAAGAAGAACTGAGGACAATTTGTGAAAGAGCTTTAAAAGT
AGAATATGAGGAGGCTGTTAAACGTCTGGAATCTGCAACTGGAAAATCCAGAAATAATGTAATTGTTATAGATGATGAAAGGACACATGACTTCTCAGCTCGAAGAGCTCAAGCACAGGACTATCAGCAAAGGTCTAGAACTCGTAAAAGAGCAGAATATTTGAGTTTAAATGACATATACAAGGATAGATGTTCTGCAC
TCTCTGAAGTATTTGACAAGGCTGCTGAACGCAACAGACCGGCAGAGATTCCAGATTATTTGACATGCAAGATAACAATGGAAATCTTGAAGGATCCTGTAATAACTCCAAGTGGCATAACATATGAAAAGTCAGCTGTTTTGGAGCATCTTCAGAAGGTGGGAAAATTTGATCCAGTGACACGACAAGTGCTAACAGCT
GATCAACTTATACCGAACTTTGCCATCAAAGAGGCTGCAAATGCTTATCTCAAAGAGAATGGTTGGGCATACAAGCATCAATAAGAATCCAATATGGCAATAAAAAGTTCCATATTCAGTACAATGCCTGCATTCTTGGAAAAGGCGAAGTCCAGCGTGTCACATTTTCTTTTGGAGTATTGGCATGAAATGTGCAGACC
CAACAACCGCCTTTTATCAAGTTATTGCTTATTTGGTGGTGTTGCTGTTAGAGTTCGCAGGGTAAATGACAAAAGATTCATTAAAAGAGGTCACAATATCTTCAGAGTTAAGTTTCCAAGGTCTACACAATCTGTACAATGAATGACAAATTGAGAAATATCATGGACAGTTGGATCTCAAATCAGTATCTATCTGTCTA
AACCCACAGTGCAGGGATTGCCTTCTCAGGACAAGGCTGCAACTTGATAGGCATCAGTAGTACAATTATAATCTGTTTACTTTTTTATTTGTTATTTGCTAAATGGCCATTATCATGAAGATGCCGAGTTTTATAATCATCCTTGTAACAATTGATGTAACTTCAATATTTACAGTTCTCGTATTGCATCATTTCTCTTG
TATTCAGATTTACTGACGAAAGATTTAGATGTGTCCACATCTTTTATTGTACTGTATAGCCTGATATGGAATAATGATTCCTACACAAAGCACAGCTTATTTATGGGTTGCACTAGCAAAAATATAACGATGAATGCATACTTGGAATGAGGGCTTGGATCAGACAACAGACAAGAATAATTTTTACATTTAGGGATACA
CAAAAGCCA
>TRINITY_DN41489_c0_g2_i3 from sample A6 / Example unspliced isoform:GTTTTGGAGCATCTTCAGAAGGTCATTGCAAGTGTTGGAGACTTCTTTTTCACTAATTCATGTAAATTTGTTTAGAGTTCTGAAATTCATTCTATGTACCAGGTGGGAAAATTTGATCCAGTGACACGACAAGTGCTAACAGCTGATCAACTTATACCGAACTTTGCCATCAAAGAGGCTGCAAATGCTTATCTCAAAGA
GAATGGTTGGGCATACAAGCATCAATAAGAATCCAATATGGCAATAAAAAGTTCCATATTCAGTACAATGCCTGCATTCTTGGAAAAgtaagattccccctttcagtttcttggataaatccaaagggtgatacaataatgcatgatatgcaaaggaaactgatcttagatggattatttttccctgtctattaacaaac
aatctgaaaagatgaatgtatattctgttctgcaagttaaggatactttatattagtattatggaatgtagcatgctgtggagttcttttcccatttcttttggactaatgcctgagctgtctgatcatcctgtgcaatttggccttctaaaagGGCGAAGTCCAGCGTGTCACATTTTCTTTTGGAGTATTGGCATGAA
ATGTGCAGACCCAACAACCGCCTTTTATCAAGTTATTGCTTATTTGGTGGTGTTGCTGTTAGAGTTCGCAGGGTAAATGACAAAAGATTCATTAAAAGAGGTCACAATATCTTCAGAGTTAAGTTTCCAAGGTCTACACAATCTGTACAATGAATGACAAATTGAGAAATATCATGGACAGTTGGATCTCAAATCAGTAT
CTATCTGTCTAAACCCACAGTGCAGGGATTGCCTTCTCAGGACAAGGCTGCAACTTGATAGGCATCAGTAGTACAATTATAATCTGTTTACTTTTTTATTTGTTATTTGCTAAATGGCCATTATCATGAAGATGCCGAGTTTTATAATCATCCTTGTAACAATTGATGTAACTTCAATATTTACAGTTCTCGTATTGCAT
CATTTCTCTTGTATTCAGATTTACTGACGAAAGATTTAGATGTGTCCACATCTTTTATTGTACTGTATAGCCTGATATGGAATAATGATTCCTACACAAAGCACAGCTTATTTATGGGTTGCACTAGCAAAAATATAACGATGAATGCATACTTGGAATGAGGGCTTGGATCAGACAACAGACAAGAATAATTTTTACAT
TTAGGGATACACAAAAGCCA