sp|Q9FH40|TA14B_ARATH ----> Transcription initiation factor TFIID subunit 14b

Intron 1 GTATGTTGGA ... AAATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25.11	116	5.5	58
A2	23.59	94.5	4	42
A3	27.71	122	5	64.5
A4	23.38	74	2	32.5
A5	25.65	56	5	29.5
A6	23.61	272	4	120
A7	24.75	461	3	224.5
A8	23.75	366	0	165.5
A9	24.06	481.5	0.5	220.5
A10	24.49	473	2	227

>TRINITY_DN105441_c0_g1_i2 from sample A3 / Example spliced isoform

TTGCAGGTAGATTTGACATGGCAGGCCAGGCGTAACATACGGTGAAGTTGTGTTGTAGGGCATTTCAGGGCCAGAAAGAATTAAATCGTTGGCGGGCGTGATGGGAAAGAAGAACAGCGCAGATCAATCGGATAGGATTCAGCGTGGCAAGACAGCAAGGCTTACAGACGACCACGAAAAAAAGGTTTTCTCTTTGTATA
TTCCATCATAAATCCTCTTTGAGTAGGGATCACATGTTCATCTGTTCTATTTCGGTTATGTTTTTTTCGCTGTTGTCATATCTTCTGGTTTTCGAATGCCATGCTTAACCAAATAAGAAGGGTGAAAGATGTGGAGATGACTATGCCTGTAGTCTATGGAACAATATCATTCTGGCTGGGGAAAAAGGCAGACGAGTACC
ACTCGCATAAATGGACTGTATATATTCGCGGGGCAACGAATGAGGATATCGGGGTTGCGATTAAAAGAGTTGTATTTCAGTTGCACCCTAGCTTCAACAATCCAACAAGAGTTGTGGAATCCGCTCCATTTGAGCTGTCTGAAACTGGGTGGGGTGAATTTGAGATAAGCATCACTATCTTCTTCCACGGCGATGTAGCA
GAGAAACAACTGGAACTATTTCATCATCTAAAATTGTATCCCGAGGACGAATCTGGACCTCAGTCAATAAAGAAGCCAGTAGTTGTCGAGTCCTATGATGAGATTGTCTTTGCAGAGCCTTCAGAAGCTTTCTATTTGCGTGCTCGCAATCACCCAGCAGTTGTTATAACTGGAACGCCAACTGGCTTGAGCTTACCACC
ACCCCCTCCAGGGGCTACTAGTGAGAATTTTGGTGAGAAGAAAAGAGGGGATACAAAGGATCATCCTCTAACTCAGTGGTTTTTGAGACACTCTGAAGCCGATGAACTGGCACTATTAACAGCAGCTCGTGAACAGGTTCAAAACCATATCATGAAATTGAAAAGACAGCTCAATTTGCTTGAAACCCAGGCCACAAGTT
TGAAACCAAATTCTGGTCAGTGAAATGGTTACCAAAAATTTCTGTAGCACCAGTCAACTCTAAATCATAATCTTGTTCATATGTAAAATAGCTTCATGAAGGTACAAATTGCCAGGCTTCGTCACTCATTCCCAGGCATGGCTTCAAGGAATTATAGTGGCCAACTTCCCCAACCTTTTAAATCTGTGAATTCATGCAAT
TTGTTGCAACAAAAGGAGGGTTGAAATGGTTGTTCAATGGTACAATAATTGTTCTCTTGTGTTTTCCTGAAACGTCATTTTTCAGTTGAAATAGAACTGTTAGCTTCTTCCTTTCAGTGGTCTCAGTAGAACCTTCTATTTTCATGACATGGGAAGAGCAGAAAATGCAGACACCCTGCAAGTGTTTATGAGAAGGCTAT
GAGATTATCGTCATGTGGTGGAAATCCTAAGCTATCCTTTTGTTTTATGTATGTTAGACCCCAAAGGCCAAATATGTGGGGGATATTCTTGCATTTTTACTTAATAGTAATGTTTATTCTCATGCAAGTTGGTACATGTAAGCCTAATTGGGATATTCAAGTATTTCACATTCTATTGGTACTTTGGTAGACTTATGTTT
TTGAGCTGCAGGAGGAGGC

>TRINITY_DN105441_c0_g1_i5 from sample A3 / Example unspliced isoform:

TTGCAGGTAGATTTGACATGGCAGGCCAGGCGTAACATACGGTGAAGTTGTGTTGTAGGGCATTTCAGGGCCAGAAAGAATTAAATCGTTGGCGGGCGTGATGGGAAAGAAGAACAGCGCAGATCAATCGGATAGGATTCAGCGTGGCAAGACAGCAAGGCTTACAGACGACCACGAAAAAAAGGTTTTCTCTTTGTATA
TTCCATCATAAATCCTCTTTGAGTAGGGATCACATGTTCATCTGTTCTATTTCGGTTATGTTTTTTTCGCTGTTGTCATATCTTCTGGTTTTCGAATGCCATGCTTgtatgttggagctgttcctgtaatcccattgtctgttgtcaatgcatatgttgagttcatcccattgcatgaaaaaaataagtaacaggaaaac
ctgtatgaaagaaataagaaactgcaaaaacctagcttagggcacatattaactgttccattgcttgcccaaatttgcagAACCAAATAAGAA

Intron 2 GTTTTCTCTT ... AAATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	11.96	405	55	0
A2	13.81	362	58	0
A3	15.76	497	93	7
A4	16.29	262	51	0
A5	11.07	233	29	0
A6	16.06	1275	244	1
A7	15.48	2332	427	1
A8	14.58	1470	251	0
A9	15.16	2182	390	2
A10	14.41	2151	362	0

>TRINITY_DN105441_c0_g1_i1 from sample A3 / Example spliced isoform

TTGCAGGTAGATTTGACATGGCAGGCCAGGCGTAACATACGGTGAAGTTGTGTTGTAGGGCATTTCAGGGCCAGAAAGAATTAAATCGTTGGCGGGCGTGATGGGAAAGAAGAACAGCGCAGATCAATCGGATAGGATTCAGCGTGGCAAGACAGCAAGGCTTACAGACGACCACGAAAAAAAGAACCAAATAAGAAGGG
TGAAAGATGTGGAGATGACTATGCCTGTAGTCTATGGAACAATATCATTCTGGCTGGGGAAAAAGGCAGACGAGTACCACTCGCATAAATGGACTGTATATATTCGCGGGGCAACGAATGAGGATATCGGGGTTGCGATTAAAAGAGTTGTATTTCAGTTGCACCCTAGCTTCAACAATCCAACAAGAGTTGTGGAATCC
GCTCCATTTGAGCTGTCTGAAACTGGGTGGGGTGAATTTGAGATAAGCATCACTATCTTCTTCCACGGCGATGTAGCAGAGAAACAACTGGAACTATTTCATCATCTAAAATTGTATCCCGAGGACGAATCTGGACCTCAGTCAATAAAGAAGCCAGTAGTTGTCGAGTCCTATGATGAGATTGTCTTTGCAGAGCCTTC
AGAAGCTTTCTATTTGCGTGCTCGCAATCACCCAGCAGTTGTTATAACTGGAACGCCAACTGGCTTGAGCTTACCACCACCCCCTCCAGGTTGTTGCTGTCTTTTAACTTTGTTAAAGGGTGACGGAATTTAACAATTTCTCCTGGAATATGCTCTCGTACAGACACAAATTTGAAATTTGTTAGCATTAGAAGATGTTT
TCTATTCTCATTGACAAGCTATGATATCTTCTTTCTGGATTGCAGGGGCTACTAGTGAGAATTTTGGTGAGAAGAAAAGAGGGGATACAAAGGATCATCCTCTAACTCAGTGGTTTTTGAGACACTCTGAAGCCGATGAACTGGCACTATTAACAGCAGCTCGTGAACAGGTTCAAAACCATATCATGAAATTGAAAAGA
CAGCTCAATTTGCTTGAAACCCAGGCCACAAGTTTGAAACCAAATTCTGGTCAGTGAAATGGTTACCAAAAATTTCTGTAGCACCAGTCAACTCTAAATCATAATCTTGTTCATATGTAAAATAGCTTCATGAAGGTACAAATTGCCAGGCTTCGTCACTCATTCCCAGGCATGGCTTCAAGGAATTATAGTGGCCAACT
TCCCCAACCTTTTAAATCTGTGAATTCATGCAATTTGTTGCAACAAAAGGAGGGTTGAAATGGTTGTTCAATGGTACAATAATTGTTCTCTTGTGTTTTCCTGAAACGTCATTTTTCAGTTGAAATAGAACTGTTAGCTTCTTCCTTTCAGTGGTCTCAGTAGAACCTTCTATTTTCATGACATGGGAAGAGCAGAAAAT
GCAGACACCCTGCAAGTGTTTATGAGAAGGCTATGAGATTATCGTCATGTGGTGGAAATCCTAAGCTATCCTTTTGTTTTATGTATGTTAGACCCCAAAGGCCAAATATGTGGGGGATATTCTTGCATTTTTACTTAATAGTAATGTTTATTCTCATGCAAGTTGGTACATGTAAGCCTAATTGGGATATTCAAGTATTT
CACATTCTATTGGTACTTTGGTAGACTTATGTTTTTGAGCTGCAGGAGGAGGC

>TRINITY_DN105441_c0_g1_i5 from sample A3 / Example unspliced isoform:

TTGCAGGTAGATTTGACATGGCAGGCCAGGCGTAACATACGGTGAAGTTGTGTTGTAGGGCATTTCAGGGCCAGAAAGAATTAAATCGTTGGCGGGCGTGATGGGAAAGAAGAACAGCGCAGATCAATCGGATAGGATTCAGCGTGGCAAGACAGCAAGGCTTACAGACGACCACGAAAAAAAGgttttctctttgtata
ttccatcataaatcctctttgagtagggatcacatgttcatctgttctatttcggttatgtttttttcgctgttgtcatatcttctggttttcgaatgccatgcttgtatgttggagctgttcctgtaatcccattgtctgttgtcaatgcatatgttgagttcatcccattgcatgaaaaaaataagtaacaggaaaac
ctgtatgaaagaaataagaaactgcaaaaacctagcttagggcacatattaactgttccattgcttgcccaaatttgcagAACCAAATAAGAA

Intron 3 GTTGTTGCTG ... TGGATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.84	123	55	22
A2	19.11	91	24	19
A3	22.48	119	41	28
A4	22.16	130	61	13
A5	24.86	68	24	21
A6	22.83	458	143	128
A7	20.73	585	174	132
A8	20.09	720	227	135
A9	20.25	707	212	147
A10	23.13	565	191	149

>TRINITY_DN114680_c0_g1_i2 from sample A1 / Example spliced isoform

AATTTGGAACCGGTTCACCGGTGAGTGAGAAGGCAGGGACGAATTCAGAGATACCACGGACAAGTCCTGCGATTGAGCCGTTGAGAAAGCAAGAGTAGAACCCTAGTCTCTATCGTAATAACCATCGAGACCGGCCACTAGATCCGGAGCCTCGACCCCAAATACCTCACTACTTACATTAACACAACCCTATGCTGTGA
ATATACTCAATGCTCAACCTTATGGGTAGATTTGACATGGCAGGCCAGGCGTAACATACGGTGAAGTTGTGTTGTAGAGCATTTCAGGGCCAGAAAGAATTAAATCGTTGGCGGGCGTGATGGGAAAGAAGAACAGCGCAGATCAATCGGATAGGATTCAGCGTGGCAAGACAGCAAGGCTTACAGACGACCACGAAAAA
AAGAACCAAATAAGAAGGGTGAAAGATGTGGAGATGACTATGCCTGTAGTCTATGGAACAATATCATTCTGGCTGGGGAAAAAGGCAGACGAGTACCACTCGCATAAATGGACTGTATATATTCGCGGGGCAACGAATGAGGATATCGGGGTTGCGATTAAAAGAGTTGTATTTCAGTTGCACCCTAGCTTCAACAATCC
AACAAGAGTTGTGGAATCCGCTCCATTTGAGCTGTCTGAAACTGGGTGGGGTGAATTTGAGATAAGCATCACTATCTTCTTCCACGGCGATGTAGCAGAGAAACAACTGGAACTATTTCATCATCTAAAATTGTATCCCGAGGACGAATCTGGACCTCAGTCAATAAAGAAGCCAGTAGTTGTCGAGTCCTATGATGAGA
TTGTCTTTGCAGAGCCTTCAGAAGCTTTCTATTTGCGTGCTCGCAATCACCCAGCAGTTGTTATAACTGGAACGCCAACTGGCTTGAGCTTACCACCACCCCCTCCAGGGGCTACTAGTGAGAATTTTGGTGAGAAGAAAAGAGGGGATACAAAGGATCATCCTCTAACTCAGTGGTTTTTGAGACACTCTGAAGCCGAT
GAACTGGCACTATTAACAGCAGCTCGTGAACAGGTTCAAAACCATATTATGAAATTGAAAAGACAGCTCAATTTGCTTGAAACCCAGGCCACAAGTTTGAAACCAAATTCTGGTCAGTGAAATGGTTACCAAAAATTTCTGTAGCACCAGTCAACTCTAAATCATAATCTTGTTCATATGTAAAATAGCTTCATGAAGGT
ACAAATTGCCAGGCTTCGTCACTCATTCCCAGGCATGGCTTCAAGGAATTATAGTGGCCAACTTCCCCAACCTTTTAAATCTGTGAATTCATGCAATTTCTTGCAACAAAAGGAGGGTTGAAATGGTTGTTCAATGGTACAATGATTGTTCTCTTGTGTTTTCCTGAAACGTCATTTTTCAGTTGAAATAGAACTGTTAG
CTTCTTCCTTTCAGTGGTCTCAGTAGAACCTTCTATTTTCATGACATGGGAAGAGCAGAAAATGCAGACACCCTGCAAGTGTTTATGAGAAGGCTATGAGATTATCGTCATGTGGTGGAAATCCTAAGCTATCCTTTTGTTTTATGTATGTTAGACCCCAAAGGCCAAATATGTGGGGGATATTCTTGCATTTTTACTTA
ATAGTAATGTTTATTCTCATGCAAGTTGGTACATGTAAGCCTAATTGGGATATTCAAGTATTTCACATTCTATTGGTACTTTGGTAGACTTATGTTTTTGAGCTGCAGGAGAGGAATACAAATATGAATATAAAAATATCAAACAAAAATAACTGTTTCCTTAAAGGAAGCTGGCATCTAAGTACTCAGATTAGTTGTGT
CTATTCTAATCCAATTTAGAAGGCCTTTTGTTTCTTTTCCCGCAATACAACTATTTTCTGCATTGTTCTTTTTTAAAGTACCCA

>TRINITY_DN114680_c0_g1_i1 from sample A1 / Example unspliced isoform:

AATTTGGAACCGGTTCACCGGTGAGTGAGAAGGCAGGGACGAATTCAGAGATACCACGGACAAGTCCTGCGATTGAGCCGTTGAGAAAGCAAGAGTAGAACCCTAGTCTCTATCGTAATAACCATCGAGACCGGCCACTAGATCCGGAGCCTCGACCCCAAATACCTCACTACTTACATTAACACAACCCTATGCTGTGA
ATATACTCAATGCTCAACCTTATGGGTAGATTTGACATGGCAGGCCAGGCGTAACATACGGTGAAGTTGTGTTGTAGAGCATTTCAGGGCCAGAAAGAATTAAATCGTTGGCGGGCGTGATGGGAAAGAAGAACAGCGCAGATCAATCGGATAGGATTCAGCGTGGCAAGACAGCAAGGCTTACAGACGACCACGAAAAA
AAGAACCAAATAAGAAGGGTGAAAGATGTGGAGATGACTATGCCTGTAGTCTATGGAACAATATCATTCTGGCTGGGGAAAAAGGCAGACGAGTACCACTCGCATAAATGGACTGTATATATTCGCGGGGCAACGAATGAGGATATCGGGGTTGCGATTAAAAGAGTTGTATTTCAGTTGCACCCTAGCTTCAACAATCC
AACAAGAGTTGTGGAATCCGCTCCATTTGAGCTGTCTGAAACTGGGTGGGGTGAATTTGAGATAAGCATCACTATCTTCTTCCACGGCGATGTAGCAGAGAAACAACTGGAACTATTTCATCATCTAAAATTGTATCCCGAGGACGAATCTGGACCTCAGTCAATAAAGAAGCCAGTAGTTGTCGAGTCCTATGATGAGA
TTGTCTTTGCAGAGCCTTCAGAAGCTTTCTATTTGCGTGCTCGCAATCACCCAGCAGTTGTTATAACTGGAACGCCAACTGGCTTGAGCTTACCACCACCCCCTCCAGgttgttgctgtcttttaactttgttaaagggtgacggaattgaacaatttctcctggaatatgatctcgtacagacacaaatttgaaatttg
ttagcattagaagatgttttctattctcattgacaagctatgatatcttctttctggattgcagGGGCTACTAGTGAGAATTTTGGTGAGAAGAAAAGAGGGGATACAAAGGATCATCCTCTAACTCAGTGGTTTTTGAGACACTCTGAAGCCGATGAACTGGCACTATTAACAGCAGCTCGTGAACAGGTAAGTAAAGA
ACAAGCAAAATTAACAGTTTTCTGAAAGATGGCAACCATAAATCAATAGTGCTTCCTGAATTACTTGGTCAAAAGTTGTGTTCAATTAAAAAGTGAATCAAGTCTAGACTCTAGACGCAG