sp|Q10NQ3|VPS9A_ORYSJ ----> Vacuolar protein sorting-associated protein 9A
Intron 1 GTACCGTTGC ... TTACTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.99 | 32 | 4 | 11 |
| A2 | 15.46 | 41 | 8 | 7 |
| A3 | 19.59 | 39 | 10 | 9 |
| A4 | 25.3 | 31 | 9 | 12 |
| A5 | 12 | 11 | 1 | 2 |
| A6 | 12.28 | 25 | 4 | 3 |
| A7 | 23.81 | 56 | 19 | 16 |
| A8 | 14.67 | 32 | 2 | 9 |
| A9 | 19.1 | 72 | 17 | 17 |
| A10 | 16.54 | 53 | 5 | 16 |
>TRINITY_DN45055_c0_g1_i2 from sample A7 / Example spliced isoformACTCAGTCATACGGTTGTATAAATAATAAAATCCACTGAGGCCGAGTTGGATAAAAGCGTTGTCGTAGATTTCGAGTCAAATTTGTTAACTGCACTCACAGAAGAGACACTTCTACACGCGATACCCATTCGAATCCGTAGTGAATTTTCAGTATTTTGCTATTTATTATTTATTTCAATATTTTGGTTTCAGAGGCAGG
GCATTTGGTTTGGATGATGCCCTACAATTGAATTGAATTGAATTGGAGAGCATAAACAGAAATGCAGAACGTGGACATTTTCAATGCTGCTACAGCTCCTCTAACTTTCCATGACTTTCTGGAGCGTATGCGCCATCCCTCTGCAGCAGATCTCGTTCGCTCTATCAAAAGCTTTATTGTATCTTTCTCAAACAATGCCC
CTGATCCAGAAAAGGACAGTAAGAGTGTACAAGAATTCCTTATCACCATGGAGGAAGCTTTCAGGGCTCATCCTTTATGGGCTGGTGCAACAGAAGACGAACTTGATAGTGCTGGTGAGGGTTTGGAGAAATATCTCATGACTAAATTGTTTAGCCATGCTTTTGGATCACTTCCAGAAGATGCAAAGCATGACCAGGAA
CTTTCAGAGAAGATGAGCTTAGTGCAGCAGTTCATCCGACCAGAGCATTTGGATATACAACCAAACTTTCAAAATGAAACATCCTGGCTGCTTGCGCAGAAGGAGTTGCAGAAAATTAATACATACAAGGCTCCTCGAGATAAGTTAGTTTGCATTCTCAACTGCTGCAGAGTTATAAATAACTTGTTACTAAACGTGTC
CATGGCAACAAATGACAATCCTCCAGGAGCTGATGATTTTCTTCCTGTACTAATCTATGTTACCATCAAGGCAAACCCTCCTCAGTTGCATTCAAATCTTTTGTATATCCAGCAATACAGGCGACAGTCTCGGCTAGTCTCTGAAGCTGCATACTTCTTTACTAATTTGGTATCTGCAGAGTCCTTCATAAAAAATATGG
ATGCCAAGTCTCTTTCAATGGAGGAAGGAGTATTTGAAAAGAACATGCAGGCAGCAAAGTTACTTTTCAATGGTACTACAAATCATGTGGACTATCCTGCAAATCACTCTGCTACAGAAGCAGTACAATTCATGTCAGAATCTACTATATCAAAGATGCCAGTACAGAAATTACATCAAAAGGAAGGAAATGAAGAATTC
CAACCTCTAGGTGAACATCAACATCAAGCTAGTAGAACATCGGCAAAACAGCCTCCAGTATCTACTGGAAAGAAGGACAAGAGTAATGAAGCATATGTGAAAGACAGTTCAGAAGCAAGTAGAATGTCAGTACACAAACTAGAAGAGAAAGGAGCTGCTGCAGTGTTGCATGCAGCTCATACTGGTCAACTAATTAAAGA
ATATCCCTTCTTGTATGCAAATGCTGGGGATTTGAGGGTGGAAGATGTTGAAACATTGCTTATTGCTTACAAAGAACTTGTACTGAAATATGTTTCACTTTCAAATGCAGTAGAGAGTTCATCATCACATAAGAGCCAGATTGCATTTAAAGTTGATGTACAGTCAAGGCAGGTTGAGTCGGATGTCTCCAAGAAAGAGA
GAGATTGGAATGATCAGAAAATCATGTCAGCACCTTCTTTGTCTACAACGAATGAAGGCAGTGGAGGATCAGACATCAAGCATTTTAATCAGGAATTGATGAAAGATGTTGATGAAGATGGCCTCCAATTGGGTTCAGAGTCAGATCATACAGAGAGTCAACTTCTTTCTAGTGGTTCAGGGGATATGTATGGTGAAGTT
CCTGCATCTGACAGAATAAAAACAATAGTGATGGAAGTTACTGCTCATTTGAATGAAGCTGGTTCTGAAGTTGATCATGGCACAGAAAATGGAAGTAGTGGGGATGTAGTGTCAGTATCAGATTCTGAATGTGTTTTGCCAAAGGCAGGCGAACAATCTTCTGTATCTTCTGCAGAAATGTTATTCTCTGAAGTAGTTCC
ATCAAATGACAAGGGCAATGAAGGACTGTAAAAATATATACATTTTGGGTGTATTCATATCTGGTGGCACATTGTTGACTGAAATTTCATTAGCTTTTTGATAGTTGTACTTTGGGGAGCCTTTCTTATGTTCTGTTAAATATCTTCTGCTGATGGCAGTTTACTGTTCCCTTGCTTGAAGCTGTTTGAGCATGGTATCT
TATGCATGCAGATGATTCACATGCTTAATATTTGCGAGCACTATCTTAACTGGAAGGCACATTGAAAACATGTTATTTGGTCAAGAACATGGTAAAAATCTGAAAAGTTGAAACCACCCGGGAGAACATTTCTGAGTTCCATGCCAGTTGTTGTAATTGCATACATGTTCTGCTCTTACTTGTGGCTCAATTGTCTTTTG
TATAATAGTGGACCTGTATTTTAATGAATCTTTGATCTATATTTCACTAAAAAATGTCTCTACTGTGTGACAATATTTGCGAAGTAACGACTTGAACTTGCTGCAGTATATTGCCATTTAACTGTTTACATGCTGACAGACACGGAATAGTATTTAAATTTCTTACAAAAGGAGGTATCCCGATTTCTAACTTTGATTAA
TTTTTG
>TRINITY_DN45055_c0_g1_i1 from sample A7 / Example unspliced isoform:ACTCAGTCATACGGTTGTATAAATAATAAAATCCACTGAGGCCGAGTTGGATAAAAGCGTTGTCGTAGATTTCGAGTCAAATTTGTTAACTGCACTCACAGAAGAGACACTTCTACACGCGATACCCATTCGAATCCGTAGTGAATTTTCAGTATTTTGCTATTTATTATTTATTTCAATATTTTGGTTTCAGAGGCAGG
GCATTTGGTTTGGATGATGCCCTACAATTGAATTGAATTGAATTGGAGAGCATAAACAGAAATGCAGAACGTGGACATTTTCAATGCTGCTACAGCTCCTCTAACTTTCCATGACTTTCTGGAGCGTATGCGCCATCCCTCTGCAGCAGATCTCGTTCGCTCTATCAAAAGCTTTATTGTATCTTTCTCAAACAATGCCC
CTGATCCAGAAAAGGACAGTAAGAGTGTACAAGAATTCCTTATCACCATGGAGGAAGCTTTCAGGGCTCATCCTTTATGGGCTGGTGCAACAGAAGACGAACTTGATAGTGCTGGTGAGGGTTTGGAGAAATATCTCATGACTAAATTGTTTAGCCATGCTTTTGGATCACTTCCAGAAGATGCAAAGCATGACCAGGAA
CTTTCAGAGAAGATGAGCTTAGTGCAGCAGTTCATCCGACCAGAGCATTTGGATATACAACCAAACTTTCAAAATGAAACATCCTGGCTGgtaccgttgcataagtccatgtgccctcctaatgttgcagcccactttcttgacaaaagcataccccatgtatttggcacatcaatgactaatacatccatatctaaatg
gattgttggatactgcgctaatcttacttcaagCTTGCGCAGAAGGAGTTGCAGAAAATTAATACATACAAGGCTCCTCGAGATAAGTTAGTTTGCATTCTCAACTGCTGCAGAGTTATAAATAACTTGTTACTAAACGTGTCCATGGCAACAAATGACAATCCTCCAGGAGCTGATGATTTTCTTCCTGTACTAATCTA
TGTTACCATCAAGGCAAACCCTCCTCAGTTGCATTCAAATCTTTTGTATATCCAGCAATACAGGCGACAGTCTCGGCTAGTCTCTGAAGCTGCATACTTCTTTACTAATTTGGTATCTGCAGAGTCCTTCATAAAAAATATGGATGCCAAGTCTCTTTCAATGGAGGAAGGAGTATTTGAAAAGAACATGCAGGCAGCAA
AGTTACTTTTCAATGGTACTACAAATCATGTGGACTATCCTGCAAATCACTCTGCTACAGAAGCAGTACAATTCATGTCAGAATCTACTATATCAAAGATGCCAGTACAGAAATTACATCAAAAGGAAGGAAATGAAGAATTCCAACCTCTAGGTGAACATCAACATCAAGCTAGTAGAACATCGGCAAAACAGCCTCCA
GTATCTACTGGAAAGAAGGACAAGAGTAATGAAGCATATGTGAAAGACAGTTCAGAAGCAAGTAGAATGTCAGTACACAAACTAGAAGAGAAAGGAGCTGCTGCAGTGTTGCATGCAGCTCATACTGGTCAACTAATTAAAGAATATCCCTTCTTGTATGCAAATGCTGGGGATTTGAGGGTGGAAGATGTTGAAACATT
GCTTATTGCTTACAAAGAACTTGTACTGAAATATGTTTCACTTTCAAATGCAGTAGAGAGTTCATCATCACATAAGAGCCAGATTGCATTTAAAGTTGATGTACAGTCAAGGCAGGTTGAGTCGGATGTCTCCAAGAAAGAGAGAGATTGGAATGATCAGAAAATCATGTCAGCACCTTCTTTGTCTACAACGAATGAAG
GCAGTGGAGGATCAGACATCAAGCATTTTAATCAGGAATTGATGAAAGATGTTGATGAAGATGGCCTCCAATTGGGTTCAGAGTCAGATCATACAGAGAGTCAACTTCTTTCTAGTGGTTCAGGGGATATGTATGGTGAAGTTCCTGCATCTGACAGAATAAAAACAATAGTGATGGAAGTTACTGCTCATTTGAATGAA
GCTGGTTCTGAAGTTGATCATGGCACAGAAAATGGAAGTAGTGGGGATGTAGTGTCAGTATCAGATTCTGAATGTGTTTTGCCAAAGGCAGGCGAACAATCTTCTGTATCTTCTGCAGAAATGTTATTCTCTGAAGTAGTTCCATCAAATGACAAGGGCAATGAAGGACTGTAAAAATATATACATTTTGGGTGTATTCA
TATCTGGTGGCACATTGTTGACTGAAATTTCATTAGCTTTTTGATAGTTGTACTTTGGGGAGCCTTTCTTATGTTCTGTTAAATATCTTCTGCTGATGGCAGTTTACTGTTCCCTTGCTTGAAGCTGTTTGAGCATGGTATCTTATGCATGCAGATGATTCACATGCTTAATATTTGCGAGCACTATCTTAACTGGAAGG
CACATTGAAAACATGTTATTTGGTCAAGAACATGGTAAAAATCTGAAAAGTTGAAACCACCCGGGAGAACATTTCTGAGTTCCATGCCAGTTGTTGTAATTGCATACATGTTCTGCTCTTACTTGTGGCTCAATTGTCTTTTGTATAATAGTGGACCTGTATTTTAATGAATCTTTGATCTATATTTCACTAAAAAATGT
CTCTACTGTGTGACAATATTTGCGAAGTAACGACTTGAACTTGCTGCAGTATATTGCCATTTAACTGTTTACATGCTGACAGACACGGAATAGTATTTAAATTTCTTACAAAAGGAGGTATCCCGATTTCTAACTTTGATTAATTTTTG
Intron 2 GTAGTGAATT ... GCATAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.18 | 14 | 20 | 40 |
| A2 | 60.87 | 18 | 20 | 36 |
| A3 | 71.05 | 11 | 18 | 36 |
| A4 | 89.74 | 2 | 11 | 24 |
| A5 | 78.57 | 3 | 12 | 10 |
| A6 | 83.33 | 3 | 11 | 19 |
| A7 | 78.49 | 10 | 33 | 40 |
| A8 | 74.19 | 4 | 8 | 15 |
| A9 | 74.55 | 14 | 32 | 50 |
| A10 | 59.32 | 24 | 21 | 49 |
>TRINITY_DN46802_c0_g3_i1 from sample A10 / Example spliced isoformTCTACTCGCGATACCCATTCGAATCCAAATGCAGAACGTGGACATTTTCAATGCTGCTACAGCTCCTCTAACTTTCCATGACTTTCTGGAGCGTATGCGCCATCCCTCTGCAGCAGATCTCGTTCGCTCTATCAAAAGCTTTATTGTATCTTTCTCAAACAATGCCCCTGATCCAGAAAAGGACAGTAAGAGTGTACAAG
AATTCCTTATTACCATGGAGGAAGCTTTCAGGGCTCATCCTTTATGGGCTGGTGCAACAGAAGACGAACTTGATAGTGCTGGTGAGGGTTTGGAGAAATATCTCATGACTAAATTGTTTAGCCATGCTTTTGGATCACTTCCAGAAGATGCAAAGCATGACCAGGAACTTTCAGAGAAGATGAGCTTAGTGCAGCAGTTC
ATCCGACCAGAGCATTTGGATATACAACCAAACTTTCAAAATGAAACATCCTGGCTGCTTGCGCAGAAGGAGTTGCAGAAAATTAATACATACAAGGCTCCTCGAGATAAGTTAGTTTGCATTCTCAACTGCTGCAGAGTTATAAATAACTTGTTACTAAACGTGTCCATGGCAACAAATGACAATCCTCCAGGAGCTGA
TGATTTTCTTCCTGTACTAATCTATGTTACCATCAAGGCAAACCCTCCTCAGTTGCATTCAAATCTTTTGTATATCCAGCAATACAGGCGACAGTCTCGGCTAGTCTCTGAAGCTGCATACTTCTTTACTAATTTGGTATCTGCAGAGTCCTTCATAAAAAATATGGATGCCAAGTCTCTTTCAATGGAGGAAGGAGTAT
TTGAAAAGAACATGCAGGCAGCAAAGTTACTTTTCAATGGTACTACAAATCATGTGGACTATCCTGCAAATCACTCTGCTACAGAAGCAGTACAATTCATGTCAGAATCTACTATATCAAAGATGCCAGTACAGAAATTACATCAAAAGGAAGGAAATGAAGAATTCCAACCTCTAGGTGAACATCAACATCAAGCTAGT
AGAACATCGGCAAAACGGCCTCCAGTATCTACTGGAAAGAAGGACAAGAGTAATGAAGCATATGTGAAAGACAGTTCAGAAGCAAGTAGAATGTCAGTACACAAACTAGAAGAGAAAGGAGCTGCTGCAGTGTTGCATGCAGCTCATACTGGTCAACTAATTAAAGAATATCCCTTCTTGTATGCAAATGCTGGGGATTT
GAGGGTGGAAGATGTTGAAACATTGCTTATTGCTTACAAAGAACTTGTACTGAAATATGTTTCACTTTCAAATGCAGTAGAGAGTTCATCATCACATAAGAGCCAGATTGCATTTAAAGTTGATGTACAGTCAAGGCAGGTTGAGTCGGATGTCTCCAAGAAAGAGAGAGATTGGAATGATCAGAAAATCATGTCAGCAC
CTTCTTTGTCTACAACGAATGAAGGCAGTGGAGGATCAGACATCAAGCATTTTAATCAGGAATTGATGAAAGATGTTGATGAAGATGGCCTCCAATTGGGTTCAGAGTCAGATCATACAGAGAGTCAACTTCTTTCTAGTGGTTCAGGGGATATGTATGGTGAAGTTCCTGCATCTGACAGAATAAAAACAATAGTGATG
GAAGTTACTGCTCATTTGAATGAAGCTGGTTCTGAAGTTGATCATGGCACAGAAAATGGAAGTAGTGGGGATGTAGTGTCAGTATCAGATTCTGAATGTGTTTTGCCAAAGGCAGGCGAACAATCTTCTGTATCTTCTGCAGAAATGTTATTCTCTGAAGTAGTTCCATCAAATGACAAGGGCAATGAAGGACTGTAAAA
ATATATACATTTTGGGTGTATTCATATCTGGTGGCACATTGTTGACTGAAATTTCATTAGCTTTTTGATAGTTGTACTTTGGGGAGCCTTTCTTATGTTCTGTTAAATATCTTCTGCTGATGGCAGTTTACTGTTCCCTTGCTTGAAGCTGTTTGAGCATGGTATCTTATGCATGCAGATGATTCACATGCTTAATATTT
GCGAGCACTATCTTAACTGGAAGGCACATTGAAAACATGTTATTTGGTCAAGAACATGGTAAAAATCTGAAAAGTTGAAACCACCCGGGAGAACATTTCTGAGTTCCATGCCAGTTGTTGTAATTGCATACATGTTCTGCTCTTACTTGTGGCTCAATTGTCTTTTGTATAATAGTGGACCTGTATTTTAATGAATCTTT
GATCTATATTTCACTAAAAAATGTCTCTACTGTGTGACAATATTTGCGAAA
>TRINITY_DN46802_c0_g3_i4 from sample A10 / Example unspliced isoform:CCTTCGTGTATTTTACCATAAAATCTGACACATATACAAAACCCACTCAGTCATACGGTTGTATAAATAATAAAATCCACTGAGGCCGAGTTGGATAAAAGCGTTGTCGTAGATTTCGAGTCAAATTTGTTAACTGCACTCACAGAAGAGACACTTCTACACGCGATACCCATTCGAATCCgtagtgaattttcagtatt
ttgttatttattatttatttcaatagtttggtttcagaggcagggcatttggtttggatgatgccctacaattgaattgaattgaattggagagcataaacagAAATGCAGAACGTGGACATTTTCAATGCTGCTACAGCTCCTCTAACTTTCCATGACTTTCTGGAGCGTATGCGCCATCCCTCTGCAGCAGATCTCGT
TCGCTCTATCAAAAGCTTTATTGTATCTTTCTCAAACAATGCCCCTGATCCAGAAAAGGACAGTAAGAGTGTACAAGAATTCCTTATTACCATGGAGGAAGCTTTCAGGGCTCATCCTTTATGGGCTGGTGCAACAGAAGACGAACTTGATAGTGCTGGTGAGGGTTTGGAGAAATATCTCATGACTAAATTGTTTAGCC
ATGCTTTTGGATCACTTCCAGAAGATGCAAAGCATGACCAGGAACTTTCAGAGAAGATGAGCTTAGTGCAGCAGTTCATCCGACCAGAGCATTTGGATATACAACCAAACTTTCAAAATGAAACATCCTGGCTGCTTGCGCAGAAGGAGTTGCAGAAAATTAATACATACAAGGCTCCTCGAGATAAGTTAGTTTGCATT
CTCAACTGCTGCAGAGTTATAAATAACTTGTTACTAAACGTGTCCATGGCAACAAATGACAATCCTCCAGGAGCTGATGATTTTCTTCCTGTACTAATCTATGTTACCATCAAGGCAAACCCTCCTCAGTTGCATTCAAATCTTTTGTATATCCAGCAATACAGGCGACAGTCTCGGCTAGTCTCTGAAGCTGCATACTT
CTTTACTAATTTGGTATCTGCAGAGTCCTTCATAAAAAATATGGATGCCAAGTCTCTTTCAATGGAGGAAGGAGTATTTGAAAAGAACATGCAGGCAGCAAAGTTACTTTTCAATGGTACTACAAATCATGTGGACTATCCTGCAAATCACTCTGCTACAGAAGCAGTACAATTCATGTCAGAATCTACTATATCAAAGA
TGCCAGTACAGAAATTACATCAAAAGGAAGGAAATGAAGAATTCCAACCTCTAGGTGAACATCAACATCAAGCTAGTAGAACATCGGCAAAACGGCCTCCAGTATCTACTGGAAAGAAGGACAAGAGTAATGAAGCATATGTGAAAGACAGTTCAGAAGCAAGTAGAATGTCAGTACACAAACTAGAAGAGAAAGGAGCT
GCTGCAGTGTTGCATGCAGCTCATACTGGTCAACTAATTAAAGAATATCCCTTCTTGTATGCAAATGCTGGGGATTTGAGGGTGGAAGATGTTGAAACATTGCTTATTGCTTACAAAGAACTTGTACTGAAATATGTTTCACTTTCAAATGCAGTAGAGAGTTCATCATCACATAAGAGCCAGATTGCATTTAAAGTTGA
TGTACAGTCAAGGCAGGTTGAGTCGGATGTCTCCAAGAAAGAGAGAGATTGGAATGATCAGAAAATCATGTCAGCACCTTCTTTGTCTACAACGAATGAAGGCAGTGGAGGATCAGACATCAAGCATTTTAATCAGGAATTGATGAAAGATGTTGATGAAGATGGCCTCCAATTGGGTTCAGAGTCAGATCATACAGAGA
GTCAACTTCTTTCTAGTGGTTCAGGGGATATGTATGGTGAAGTTCCTGCATCTGACAGAATAAAAACAATAGTGATGGAAGTTACTGCTCATTTGAATGAAGCTGGTTCTGAAGTTGATCATGGCACAGAAAATGGAAGTAGTGGGGATGTAGTGTCAGTATCAGATTCTGAATGTGTTTTGCCAAAGGCAGGCGAACAA
TCTTCTGTATCTTCTGCAGAAATGTTATTCTCTGAAGTAGTTCCATCAAATGACAAGGGCAATGAAGGACTGTAAAAATATATACATTTTGGGTGTATTCATATCTGGTGGCACATTGTTGACTGAAATTTCATTAGCTTTTTGATAGTTGTACTTTGGGGAGCCTTTCTTATGTTCTGTTAAATATCTTCTGCTGATGG
CAGTTTACTGTTCCCTTGCTTGAAGCTGTTTGAGCATGGTATCTTATGCATGCAGATGATTCACATGCTTAATATTTGCGAGCACTATCTTAACTGGAAGGCACATTGAAAACATGTTATTTGGTCAAGAACATGGTAAAAATCTGAAAAGTTGAAACCACCCGGGAGAACATTTCTGAGTTCCATGCCAGTTGTTGTAA
TTGCATACATGTTCTGCTCTTACTTGTGGCTCAATTGTCTTTTGTATAATAGTGGACCTGTATTTTAATGAATCTTTGATCTATATTTCACTAAAAAATGTCTCTACTGTGTGACAATATTTGCGAAA